Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G053100 Phaseolus vulgaris HOM05D007211 ORTHO05D009060 2.0e-39 165.2 80 100.0
Glyma.01G243800 Glycine max HOM05D007211 ORTHO05D009060 2.6e-31 138.3 81 84.0
TPR.G21608 Trifolium pratense HOM05D007211 ORTHO05D009060 3.8e-30 134.4 83 79.5
Ca_24347_v3 Cicer arietinum L. HOM05D007211 ORTHO05D009060 6.5e-30 133.7 83 79.5
Medtr5g004970 Medicago truncatula HOM05D007211 ORTHO05D009060 7.2e-29 130.2 81 79.0
Lj1g0022136 Lotus japonicus HOM05D007211 ORTHO05D009060 2.1e-28 128.6 81 76.5
Psat4g228560 Pisum sativum HOM05D007211 ORTHO05D009060 1.8e-27 125.6 80 77.5
arahy.Tifrunner.gnm1.ann1.0PG00T Arachis hypogaea HOM05D007211 ORTHO05D009060 5.1e-27 124.0 81 72.8
arahy.Tifrunner.gnm1.ann1.YF4EPK Arachis hypogaea HOM05D007211 ORTHO05D009060 5.1e-27 124.0 81 72.8
arahy.Tifrunner.gnm1.ann1.UEWU3Q Arachis hypogaea HOM05D007211 ORTHO05D009060 1.5e-26 122.5 81 71.6
Lalb_Chr09g0319591 Lupinus albus HOM05D007211 ORTHO05D009060 2.5e-26 121.7 77 76.6
CSS0010427 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 2.2e-25 118.6 81 69.1
CSS0021869 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 2.2e-25 118.6 81 69.1
Oeu029529.1 Olea europaea HOM05D007211 ORTHO05D009060 2.2e-25 118.6 83 71.1
Cc02_g19360 Coffea canephora HOM05D007211 ORTHO05D009060 2.8e-25 118.2 80 70.0
GSVIVG01037902001 Vitis vinifera HOM05D007211 ORTHO05D009060 8.2e-25 116.7 83 68.7
EL10Ac9g22259 Beta vulgaris HOM05D007211 ORTHO05D009060 1.1e-24 116.3 82 67.1
Nitab4.5_0001480g0150 Nicotiana tabacum HOM05D007211 ORTHO05D009060 3.1e-24 114.8 80 70.0
Actinidia34396 Actinidia chinensis HOM05D007211 ORTHO05D009060 4.1e-24 114.4 81 67.9
AUR62039062 Chenopodium quinoa HOM05D007211 ORTHO05D009060 4.1e-24 114.4 82 64.6
Ciclev10029710m.g Citrus clementina HOM05D007211 ORTHO05D009060 4.1e-24 114.4 81 66.7
QL11p032854 Quercus lobata HOM05D007211 ORTHO05D009060 4.1e-24 114.4 80 70.0
Rhsim11G0157000 Rhododendron simsii HOM05D007211 ORTHO05D009060 5.3e-24 114.0 81 69.1
Rhsim11G0158600 Rhododendron simsii HOM05D007211 ORTHO05D009060 5.3e-24 114.0 81 67.9
CiPaw.06G168700 Carya illinoinensis HOM05D007211 ORTHO05D009060 6.9e-24 113.6 80 68.8
vmacro01995 Vaccinium macrocarpon HOM05D007211 ORTHO05D009060 6.9e-24 113.6 81 67.9
Oeu013758.1 Olea europaea HOM05D007211 ORTHO05D009060 9.1e-24 113.2 83 68.7
MELO3C019551.2 Cucumis melo HOM05D007211 ORTHO05D009060 1.2e-23 112.8 80 70.0
TWI79G1551 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 1.2e-23 112.8 80 68.8
AUR62010326 Chenopodium quinoa HOM05D007211 ORTHO05D009060 2.0e-23 112.1 80 65.0
PGSC0003DMG400025763 Solanum tuberosum HOM05D007211 ORTHO05D009060 2.0e-23 112.1 80 68.8
Haze_10197 Corylus avellana HOM05D007211 ORTHO05D009060 2.6e-23 111.7 80 67.5
Hund00155 Selenicereus undatus HOM05D000364 ORTHO05D009060 2.6e-23 111.7 80 65.0
AL3G32910 Arabidopsis lyrata HOM05D007211 ORTHO05D009060 3.4e-23 111.3 79 72.2
ClCG05G010330 Citrullus lanatus HOM05D007211 ORTHO05D009060 3.4e-23 111.3 80 68.8
CsaV3_3G018160 Cucumis sativus L. HOM05D007211 ORTHO05D009060 4.5e-23 110.9 80 68.8
Sopen01g049710 Solanum pennellii HOM05D007211 ORTHO05D009060 4.5e-23 110.9 80 67.5
unitig_0.g876 Utricularia gibba HOM05D007211 ORTHO05D009060 4.5e-23 110.9 80 70.0
CARHR094930 Cardamine hirsuta HOM05D007211 ORTHO05D009060 5.9e-23 110.5 79 70.9
Potri.001G299200 Populus trichocarpa HOM05D007211 ORTHO05D009060 5.9e-23 110.5 81 64.2
Sabra09G0072500 Salix brachista HOM05D007211 ORTHO05D009060 5.9e-23 110.5 81 64.2
Sp3g17560 Schrenkiella parvula HOM05D007211 ORTHO05D009060 7.7e-23 110.2 79 70.9
Gohir.A13G044300 Gossypium hirsutum HOM05D007211 ORTHO05D009060 1.0e-22 109.8 80 67.5
Prupe.8G136900 Prunus persica HOM05D007211 ORTHO05D009060 1.0e-22 109.8 80 68.8
Sed0014592 Sechium edule HOM05D007211 ORTHO05D009060 1.0e-22 109.8 80 66.2
AT3G19508 Arabidopsis thaliana HOM05D007211 ORTHO05D009060 1.7e-22 109.0 79 69.6
Migut.B00396 Erythranthe guttata HOM05D007211 ORTHO05D009060 1.7e-22 109.0 80 66.2
COL.COLO4_32576 Corchorus olitorius HOM05D007211 ORTHO05D009060 2.2e-22 108.6 80 65.0
Sc14g0001880 Simmondsia chinensis HOM05D007211 ORTHO05D009060 2.2e-22 108.6 81 61.7
A05p30110 Brassica napus HOM05D002228 ORTHO05D002347 2.9e-22 108.2 79 69.6
C05p45540 Brassica napus HOM05D007211 ORTHO05D009060 2.9e-22 108.2 79 69.6
BraA05t21851Z Brassica rapa HOM05D002228 ORTHO05D002347 2.9e-22 108.2 79 69.6
Eucgr.I01095 Eucalyptus grandis HOM05D007211 ORTHO05D009060 2.9e-22 108.2 80 65.0
Nn1g04662 Nelumbo nucifera HOM05D007211 ORTHO05D009060 2.9e-22 108.2 81 64.2
PGR142G3039 Punica granatum HOM05D007211 ORTHO05D009060 2.9e-22 108.2 80 66.2
Aqoxy6G02839 Aquilegia oxysepala HOM05D007211 ORTHO05D009060 3.8e-22 107.8 80 65.0
Carub.0003s1931 Capsella rubella HOM05D007211 ORTHO05D009060 3.8e-22 107.8 79 69.6
Gorai.013G048100 Gossypium raimondii HOM05D007211 ORTHO05D009060 3.8e-22 107.8 80 66.2
Hma1.2p1_1518F.1_g288450 Hydrangea macrophylla HOM05D007211 ORTHO05D009060 3.8e-22 107.8 80 66.2
Manes.10G075811 Manihot esculenta HOM05D007211 ORTHO05D009060 3.8e-22 107.8 81 64.2
Manes.10G076037 Manihot esculenta HOM05D007211 ORTHO05D009060 3.8e-22 107.8 81 64.2
Aa31LG8G6260 Aethionema arabicum HOM05D007211 ORTHO05D009060 5.0e-22 107.5 79 67.1
BcaC05g28470 Brassica carinata HOM05D007211 ORTHO05D009060 5.0e-22 107.5 79 68.4
BcaC09g48904 Brassica carinata HOM05D007211 ORTHO05D009060 5.0e-22 107.5 79 68.4
A01p35210 Brassica napus HOM05D007211 ORTHO05D009060 5.0e-22 107.5 79 68.4
BolC5t33279H Brassica oleracea HOM05D007211 ORTHO05D009060 5.0e-22 107.5 79 68.4
BraA01t03602Z Brassica rapa HOM05D007211 ORTHO05D009060 5.0e-22 107.5 79 68.4
DCAR_029091 Daucus carota HOM05D007211 ORTHO05D009060 5.0e-22 107.5 83 62.7
Gohir.D13G043400 Gossypium hirsutum HOM05D007211 ORTHO05D009060 5.0e-22 107.5 80 66.2
Thecc.02G110400 Theobroma cacao HOM05D007211 ORTHO05D009060 5.0e-22 107.5 80 65.0
Atru.chr5.2471 Acer truncatum HOM05D007211 ORTHO05D009060 8.5e-22 106.7 81 61.7
BcaB06g26010 Brassica carinata HOM05D007211 ORTHO05D009060 1.1e-21 106.3 79 68.4
BcaC09g48910 Brassica carinata HOM05D002228 ORTHO05D002347 1.1e-21 106.3 79 67.1
C01p44630 Brassica napus HOM05D007211 ORTHO05D009060 1.1e-21 106.3 79 67.1
BolC1t04431H Brassica oleracea HOM05D007211 ORTHO05D009060 1.1e-21 106.3 79 67.1
MD00G1109400 Malus domestica HOM05D007211 ORTHO05D009060 1.1e-21 106.3 80 66.2
MD04G1005100 Malus domestica HOM05D007211 ORTHO05D009060 1.1e-21 106.3 80 66.2
Potri.009G094200 Populus trichocarpa HOM05D007211 ORTHO05D009060 1.1e-21 106.3 81 61.7
RcHm_v2.0_Chr6g0254661 Rosa chinensis HOM05D007211 ORTHO05D009060 1.1e-21 106.3 80 67.5
Cpa.g.sc106.108 Carica papaya HOM05D007211 ORTHO05D009060 1.4e-21 105.9 80 63.8
RcHm_v2.0_Chr6g0254711 Rosa chinensis HOM05D007211 ORTHO05D009060 1.4e-21 105.9 80 67.5
PSO541G5220 Papaver somniferum HOM05D007211 ORTHO05D009060 1.9e-21 105.5 81 61.7
TWI31G1006 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 1.9e-21 105.5 80 65.0
CANSAT25G1462 Cannabis sativa HOM05D007211 ORTHO05D009060 2.5e-21 105.1 80 63.8
CANSAT25G3598 Cannabis sativa HOM05D007211 ORTHO05D009060 2.5e-21 105.1 80 63.8
Duzib248G0207 Durio zibethinus HOM05D007211 ORTHO05D009060 3.2e-21 104.8 80 63.8
HanXRQChr03g0068751 Helianthus annuus HOM05D007211 ORTHO05D009060 5.5e-21 104.0 80 63.8
MD05G1023600 Malus domestica HOM05D007211 ORTHO05D009060 5.5e-21 104.0 83 63.9
TAR376G0209 Trochodendron aralioides HOM05D007211 ORTHO05D009060 7.2e-21 103.6 80 63.8
Lsat_1_v5_gn_9_112060 Lactuca sativa HOM05D007211 ORTHO05D009060 9.4e-21 103.2 80 62.5
FvH4_2g04840 Fragaria vesca HOM05D007211 ORTHO05D009060 1.2e-20 102.8 80 66.2
FAN15G0614 Fragaria x ananassa HOM05D000062 ORTHO05D000043 1.2e-20 102.8 80 66.2
FAN24G1282 Fragaria x ananassa HOM05D000062 ORTHO05D000043 1.2e-20 102.8 80 66.2
ECA240G2095 Erigeron canadensis HOM05D007211 ORTHO05D009060 3.6e-20 101.3 80 62.5
FAN27G1079 Fragaria x ananassa HOM05D007211 ORTHO05D009060 1.4e-19 99.4 80 65.0
Cfa004601 Carpinus fangiana HOM05D007211 ORTHO05D009060 1.8e-19 99.0 80 60.0
CDE07G1397 Ceratophyllum demersum HOM05D007211 ORTHO05D009060 1.7e-17 92.4 78 59.0
CAN.G606.15 Capsicum annuum HOM05D007211 ORTHO05D009060 1.8e-16 89.0 65 69.2
Nitab4.5_0004326g0030 Nicotiana tabacum HOM05D007211 ORTHO05D009060 3.1e-16 88.2 66 66.7
Os01g0342800 Oryza sativa ssp. japonica HOM05D007211 ORTHO05D009060 3.5e-15 84.7 74 59.5
AagrBONN_evm.TU.Sc2ySwM_362.1547 Anthoceros agrestis HOM05D007211 ORTHO05D009060 7.7e-15 83.6 78 53.8
AagrBONN_evm.TU.Sc2ySwM_362.2090 Anthoceros agrestis HOM05D007211 ORTHO05D009060 1.0e-14 83.2 78 53.8
BcaB04g20701 Brassica carinata HOM05D002228 ORTHO05D002347 5.0e-14 80.9 87 55.2
MD10G1099000 Malus domestica HOM05D007211 ORTHO05D009060 6.5e-14 80.5 69 58.0
Zm00001eb307960 Zea mays HOM05D007211 ORTHO05D009060 1.5e-13 79.3 73 57.5
MBI16_g16358_MAGBIO Magnolia biondii HOM05D007211 ORTHO05D009060 5.5e-13 77.4 59 64.4
BcaC09g48905 Brassica carinata HOM05D007211 ORTHO05D009060 9.4e-13 76.6 85 54.1
BcaC09g48902 Brassica carinata HOM05D007211 ORTHO05D009060 3.6e-12 74.7 103 46.6
BcaC09g48907 Brassica carinata HOM05D007211 ORTHO05D009060 7.5e-10 67.0 44 75.0
Sabra16G0187800 Salix brachista HOM05D007211 ORTHO05D009060 7.5e-10 67.0 57 57.9
CBR_g972 Chara braunii HOM05D007211 ORTHO05D009060 1.3e-09 66.2 76 42.1
Pp3c17_14820 Physcomitrium patens HOM05D007211 ORTHO05D009060 2.4e-08 62.0 58 51.7
AagrBONN_evm.TU.Sc2ySwM_344.3864 Anthoceros agrestis HOM05D007211 ORTHO05D009060 1.2e-07 59.7 56 53.6
MCO09G621 Micromonas commoda HOM05D007211 ORTHO05D009060 6.5e-06 53.9 61 45.9


User provided reference genes

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