Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G044000 Phaseolus vulgaris HOM05D007085 ORTHO05D008828 6.0e-121 438.3 392 100.0
VMungo1080G1467 Vigna mungo HOM05D007085 ORTHO05D008828 4.6e-105 385.6 210 90.5
Glyma.15G245700 Glycine max HOM05D007085 ORTHO05D008828 1.0e-75 288.1 220 71.4
Lj3g0005838 Lotus japonicus HOM05D007085 ORTHO05D008828 7.3e-50 202.2 188 58.5
TPR.G29685 Trifolium pratense HOM05D007085 ORTHO05D008828 1.2e-49 201.4 186 54.8
Psat1g009200 Pisum sativum HOM05D007085 ORTHO05D008828 6.8e-48 195.7 185 52.4
Medtr2g072170 Medicago truncatula HOM05D007085 ORTHO05D008828 2.9e-46 190.3 190 51.6
arahy.Tifrunner.gnm1.ann1.10LGU9 Arachis hypogaea HOM05D007085 ORTHO05D008828 2.1e-41 174.1 174 52.9
arahy.Tifrunner.gnm1.ann1.L57236 Arachis hypogaea HOM05D007085 ORTHO05D008828 2.8e-41 173.7 174 52.3
BcaC05g29059 Brassica carinata HOM05D007085 ORTHO05D008828 1.9e-37 161.0 210 41.9
C05p52690 Brassica napus HOM05D007085 ORTHO05D008828 1.9e-37 161.0 210 41.9
BcaB06g25373 Brassica carinata HOM05D007085 ORTHO05D008828 3.2e-37 160.2 208 42.3
BolC5t33948H Brassica oleracea HOM05D007085 ORTHO05D008828 4.1e-37 159.8 210 41.0
Eucgr.F03214 Eucalyptus grandis HOM05D007085 ORTHO05D008828 6.0e-36 156.0 197 41.1
CiPaw.12G046300 Carya illinoinensis HOM05D007085 ORTHO05D008828 7.8e-36 155.6 219 41.6
TWI60G0193 Tripterygium wilfordii HOM05D007085 ORTHO05D008828 7.8e-36 155.6 178 44.4
BraA05t22296Z Brassica rapa HOM05D007085 ORTHO05D008828 2.3e-35 154.1 208 40.4
Manes.01G152600 Manihot esculenta HOM05D007085 ORTHO05D008828 3.0e-35 153.7 217 38.2
ClCG11G016990 Citrullus lanatus HOM05D007085 ORTHO05D008828 3.9e-35 153.3 191 40.3
Thhalv10020856m.g Eutrema salsugineum HOM05D007085 ORTHO05D008828 8.6e-35 152.1 209 41.6
Prupe.4G152100 Prunus persica HOM05D007085 ORTHO05D008828 8.6e-35 152.1 189 42.9
Hma1.2p1_0587F.1_g184339 Hydrangea macrophylla HOM05D007085 ORTHO05D008828 1.1e-34 151.8 213 39.0
Hma1.2p1_0587F.1_g184370 Hydrangea macrophylla HOM05D007085 ORTHO05D008828 1.1e-34 151.8 213 39.0
AL3G26910 Arabidopsis lyrata HOM05D007085 ORTHO05D008828 1.5e-34 151.4 215 40.0
A05p34840 Brassica napus HOM05D007085 ORTHO05D008828 1.5e-34 151.4 203 41.9
QL04p068992 Quercus lobata HOM05D007085 ORTHO05D008828 2.5e-34 150.6 195 41.0
MELO3C025593.2 Cucumis melo HOM05D007085 ORTHO05D008828 3.3e-34 150.2 193 38.3
Migut.M00624 Erythranthe guttata HOM05D007085 ORTHO05D008828 3.3e-34 150.2 177 44.6
Sabra16G0250000 Salix brachista HOM05D007085 ORTHO05D008828 4.3e-34 149.8 179 41.3
CARHR089540 Cardamine hirsuta HOM05D007085 ORTHO05D008828 5.6e-34 149.4 193 40.4
Haze_08476 Corylus avellana HOM05D007085 ORTHO05D008828 7.3e-34 149.1 194 39.7
CsaV3_4G032620 Cucumis sativus L. HOM05D007085 ORTHO05D008828 7.3e-34 149.1 193 38.3
Cpa.g.sc2050.1 Carica papaya HOM05D007085 ORTHO05D008828 9.5e-34 148.7 203 41.4
Cfa019473 Carpinus fangiana HOM05D007085 ORTHO05D008828 1.6e-33 147.9 192 39.1
Peaxi162Scf00573g00042 Petunia axillaris HOM05D007085 ORTHO05D008828 2.1e-33 147.5 177 42.9
Sed0002576 Sechium edule HOM05D007085 ORTHO05D008828 2.1e-33 147.5 217 37.8
Ciclev10020422m.g Citrus clementina HOM05D007085 ORTHO05D008828 2.8e-33 147.1 178 42.1
Potri.001G379500 Populus trichocarpa HOM05D007085 ORTHO05D008828 2.8e-33 147.1 208 38.0
AT3G14580 Arabidopsis thaliana HOM05D007085 ORTHO05D008828 3.6e-33 146.7 180 41.1
Carub.0003s1428 Capsella rubella HOM05D007085 ORTHO05D008828 6.2e-33 146.0 180 40.6
RhsimUnG0205600 Rhododendron simsii HOM05D007085 ORTHO05D008828 8.1e-33 145.6 177 41.8
SGA_v2.0_scaffold34G13702 Striga asiatica HOM05D007085 ORTHO05D008828 8.1e-33 145.6 177 44.6
Lj8P143T18 Lonicera japonica HOM05D007085 ORTHO05D008828 1.1e-32 145.2 212 39.2
CSS0001065 Camellia sinensis var. sinensis HOM05D007085 ORTHO05D008828 1.8e-32 144.4 177 41.2
FAN16G1935 Fragaria x ananassa HOM05D007085 ORTHO05D008828 2.4e-32 144.1 211 38.4
SalBow8G4060 Salvia bowleyana HOM05D007085 ORTHO05D008828 3.1e-32 143.7 177 43.5
CANSAT56G2932 Cannabis sativa HOM05D007085 ORTHO05D008828 4.0e-32 143.3 184 40.2
Cc05_g10440 Coffea canephora HOM05D007085 ORTHO05D008828 4.0e-32 143.3 192 40.1
MD11G1276100 Malus domestica HOM05D007085 ORTHO05D008828 5.2e-32 142.9 192 40.1
Dinv13328 Davidia involucrata HOM05D007085 ORTHO05D008828 6.8e-32 142.5 177 40.7
PGR031G3190 Punica granatum HOM05D007085 ORTHO05D008828 1.2e-31 141.7 212 37.7
ECA240G0168 Erigeron canadensis HOM05D007085 ORTHO05D008828 1.5e-31 141.4 175 41.1
FvH4_3g16970 Fragaria vesca HOM05D007085 ORTHO05D008828 1.5e-31 141.4 214 37.4
FAN11G1303 Fragaria x ananassa HOM05D007085 ORTHO05D008828 1.5e-31 141.4 214 37.4
DCAR_021048 Daucus carota HOM05D007085 ORTHO05D008828 2.6e-31 140.6 177 40.7
Sp3g12850 Schrenkiella parvula HOM05D007085 ORTHO05D008828 2.6e-31 140.6 180 39.4
Sc03g0010930 Simmondsia chinensis HOM05D007085 ORTHO05D008828 3.4e-31 140.2 193 40.4
Lsat_1_v5_gn_9_101401 Lactuca sativa HOM05D007085 ORTHO05D008828 1.3e-30 138.3 175 39.4
PSO063G4137 Papaver somniferum HOM05D007085 ORTHO05D008828 1.3e-30 138.3 180 40.6
PGSC0003DMG400044445 Solanum tuberosum HOM05D007085 ORTHO05D008828 1.7e-30 137.9 193 38.3
PGSC0003DMG402021252 Solanum tuberosum HOM05D007085 ORTHO05D008828 1.7e-30 137.9 193 38.3
Aa31LG8G1790 Aethionema arabicum HOM05D000230 ORTHO05D000176 2.2e-30 137.5 180 37.8
Actinidia03646 Actinidia chinensis HOM05D007085 ORTHO05D008828 3.8e-30 136.7 184 40.8
SHI27645 Sapria himalayana HOM05D007085 ORTHO05D008828 6.4e-30 136.0 178 41.0
vmacro09426 Vaccinium macrocarpon HOM05D007085 ORTHO05D008828 6.4e-30 136.0 199 36.7
TAR627G0225 Trochodendron aralioides HOM05D007085 ORTHO05D008828 2.4e-29 134.0 177 39.5
Ah.04g163870 Amaranthus hybridus HOM05D007085 ORTHO05D008828 4.1e-29 133.3 179 41.9
EL10Ac4g08466 Beta vulgaris HOM05D007085 ORTHO05D008828 5.4e-29 132.9 195 38.5
Solyc10g007520.3 Solanum lycopersicum HOM05D007085 ORTHO05D008828 7.1e-29 132.5 182 39.6
Zm00001eb431040 Zea mays HOM05D007085 ORTHO05D008828 9.2e-29 132.1 179 39.7
Oeu009876.3 Olea europaea HOM05D007085 ORTHO05D008828 2.1e-28 131.0 174 42.0
Os04g0618050 Oryza sativa ssp. japonica HOM05D007085 ORTHO05D008828 2.1e-28 131.0 179 39.1
Sopen10g003460 Solanum pennellii HOM05D007085 ORTHO05D008828 4.6e-28 129.8 182 39.0
Nn3g20730 Nelumbo nucifera HOM05D007085 ORTHO05D008828 7.8e-28 129.0 190 36.8
RcHm_v2.0_Chr5g0028281 Rosa chinensis HOM05D007085 ORTHO05D008828 1.3e-27 128.3 195 39.0
Aqoxy2G00336 Aquilegia oxysepala HOM05D007085 ORTHO05D008828 1.7e-27 127.9 180 37.2
CAN.G4458.1 Capsicum annuum HOM05D007085 ORTHO05D008828 3.9e-27 126.7 219 34.7
CAN.G904.26 Capsicum annuum HOM05D007085 ORTHO05D008828 3.9e-27 126.7 219 34.7
CAN.G904.38 Capsicum annuum HOM05D007085 ORTHO05D008828 3.9e-27 126.7 219 34.7
ATR0605G112 Amborella trichopoda HOM05D007085 ORTHO05D008828 1.5e-26 124.8 177 39.5
CDE04G0400 Ceratophyllum demersum HOM05D007085 ORTHO05D008828 9.6e-26 122.1 183 37.2
Thecc.07G142300 Theobroma cacao HOM05D007085 ORTHO05D008828 9.6e-26 122.1 171 39.2
HPP92_011319 Vanilla planifolia HOM05D007085 ORTHO05D008828 3.6e-25 120.2 198 37.9
Duzib268G0775 Durio zibethinus HOM05D007085 ORTHO05D008828 9.0e-24 115.5 170 37.6
MBI07_g26363_MAGBIO Magnolia biondii HOM05D007085 ORTHO05D008828 4.4e-23 113.2 159 35.8
COL.COLO4_17436 Corchorus olitorius HOM05D007085 ORTHO05D008828 5.8e-23 112.8 171 36.8
Gohir.D11G302200 Gossypium hirsutum HOM05D007085 ORTHO05D008828 1.3e-22 111.7 185 37.3
Gorai.007G334000 Gossypium raimondii HOM05D007085 ORTHO05D008828 1.3e-22 111.7 185 37.8
Gorai.007G334700 Gossypium raimondii HOM05D007085 ORTHO05D008828 1.3e-22 111.7 187 36.9
Gohir.A11G290600 Gossypium hirsutum HOM05D007085 ORTHO05D008828 1.7e-22 111.3 185 37.3
Gorai.007G332700 Gossypium raimondii HOM05D007085 ORTHO05D008828 2.2e-22 110.9 186 36.0
Oeu006136.1 Olea europaea HOM05D007085 ORTHO05D008828 2.2e-22 110.9 130 46.2
Gorai.007G334300 Gossypium raimondii HOM05D007085 ORTHO05D008828 4.9e-22 109.8 186 36.0
Nitab4.5_0000923g0040 Nicotiana tabacum HOM05D000021 ORTHO05D008828 4.9e-22 109.8 191 36.1
Actinidia00869 Actinidia chinensis HOM05D007085 ORTHO05D008828 4.2e-21 106.7 150 39.3
THA.LOC104822596 Tarenaya hassleriana HOM05D007085 ORTHO05D008828 1.0e-19 102.1 186 32.8
AUR62037984 Chenopodium quinoa HOM05D007085 ORTHO05D008828 1.1e-18 98.6 145 39.3
BcaC05g29057 Brassica carinata HOM05D007085 ORTHO05D008828 1.9e-18 97.8 124 41.9
Nitab4.5_0009310g0040 Nicotiana tabacum HOM05D007085 ORTHO05D008828 1.9e-18 97.8 147 38.8
AUR62019703 Chenopodium quinoa HOM05D007085 ORTHO05D008828 1.4e-16 91.7 134 38.1
Sc03g0010950 Simmondsia chinensis HOM05D007085 ORTHO05D008828 1.6e-12 78.2 66 54.5
FAN13G3224 Fragaria x ananassa HOM05D007660 ORTHO05D009442 1.9e-10 71.2 212 26.9
Ca_03402_v3 Cicer arietinum L. HOM05D007085 ORTHO05D008828 2.5e-10 70.9 53 64.2
SEGI_39798 Sequoiadendron giganteum HOM05D007085 ORTHO05D008828 5.6e-10 69.7 131 32.1
Ah.08g214900 Amaranthus hybridus HOM05D007197 ORTHO05D009064 1.3e-09 68.6 180 30.6
FAN04G1497 Fragaria x ananassa HOM05D007660 ORTHO05D009442 2.8e-09 67.4 212 26.9
EL10Ac7g15952 Beta vulgaris HOM05D000970 ORTHO05D000788 3.7e-09 67.0 164 29.3
HanXRQChr03g0074311 Helianthus annuus HOM05D007085 ORTHO05D008828 3.7e-09 67.0 55 52.7
Ca_15991_v3 Cicer arietinum L. HOM05D001657 ORTHO05D001557 8.1e-09 65.9 192 29.7
VMungo1309G1576 Vigna mungo HOM05D000104 ORTHO05D009920 2.4e-08 64.3 174 30.5
Ca_19202_v3 Cicer arietinum L. HOM05D002453 ORTHO05D002107 3.1e-08 63.9 186 24.7
FAN08G3071 Fragaria x ananassa HOM05D007660 ORTHO05D009442 6.9e-08 62.8 213 25.4
Phvul.009G206300 Phaseolus vulgaris HOM05D000104 ORTHO05D009920 9.0e-08 62.4 174 29.9
TPR.G26074 Trifolium pratense HOM05D007660 ORTHO05D009442 9.0e-08 62.4 202 26.7
Psat5g045960 Pisum sativum HOM05D007660 ORTHO05D009442 1.5e-07 61.6 178 28.7
Gorai.007G333400 Gossypium raimondii HOM05D007085 ORTHO05D008828 2.0e-07 61.2 94 39.4
Sed0003873 Sechium edule HOM05D007660 ORTHO05D009442 2.0e-07 61.2 197 25.9
FAN18G0914 Fragaria x ananassa HOM05D007660 ORTHO05D009442 3.4e-07 60.5 212 26.4
Actinidia25367 Actinidia chinensis HOM05D002986 ORTHO05D003966 4.5e-07 60.1 130 33.8
FAN21G3973 Fragaria x ananassa HOM05D002453 ORTHO05D002107 4.5e-07 60.1 146 31.5
Migut.F00552 Erythranthe guttata HOM05D000104 ORTHO05D009920 5.8e-07 59.7 189 27.5
RcHm_v2.0_Chr4g0424581 Rosa chinensis HOM05D007660 ORTHO05D009442 5.8e-07 59.7 218 24.8
ClCG11G014470 Citrullus lanatus HOM05D007660 ORTHO05D009442 1.3e-06 58.5 199 25.6
CAN.G423.43 Capsicum annuum HOM05D002453 ORTHO05D002107 1.7e-06 58.2 161 26.7
Lj7C453T5 Lonicera japonica HOM05D002986 ORTHO05D003966 1.7e-06 58.2 235 26.0
Dinv32619 Davidia involucrata HOM05D002986 ORTHO05D007611 2.2e-06 57.8 130 31.5
GSVIVG01031218001 Vitis vinifera HOM05D002986 ORTHO05D007611 2.2e-06 57.8 178 27.0
Duzib132G0118 Durio zibethinus HOM05D007155 ORTHO05D003034 2.9e-06 57.4 135 25.2
FvH4_3g34780 Fragaria vesca HOM05D002453 ORTHO05D002107 2.9e-06 57.4 146 30.1
FAN11G0465 Fragaria x ananassa HOM05D002453 ORTHO05D002107 2.9e-06 57.4 146 30.1
Aa31LG11G11130 Aethionema arabicum HOM05D007660 ORTHO05D009442 3.8e-06 57.0 206 24.8
SEGI_37919 Sequoiadendron giganteum HOM05D006895 ORTHO05D008605 3.8e-06 57.0 171 25.1
SGA_v2.0_scaffold60G20860 Striga asiatica HOM05D000104 ORTHO05D009920 3.8e-06 57.0 215 27.0
Atru.chr13.1043 Acer truncatum HOM05D007660 ORTHO05D009442 4.9e-06 56.6 184 24.5
MSTRG.12628 Avicennia marina HOM05D004271 ORTHO05D002107 4.9e-06 56.6 163 28.2
Duzib168G2083 Durio zibethinus HOM05D007660 ORTHO05D009442 4.9e-06 56.6 212 25.0
Medtr3g100600 Medicago truncatula HOM05D007660 ORTHO05D009442 4.9e-06 56.6 193 24.4
Zm00001eb269290 Zea mays HOM05D002986 ORTHO05D003966 4.9e-06 56.6 179 31.8
ATR0564G099 Amborella trichopoda HOM05D002453 ORTHO05D002107 6.4e-06 56.2 171 23.4
Glyma.12G191600 Glycine max HOM05D000104 ORTHO05D009920 6.4e-06 56.2 165 27.3
Psat6g065880 Pisum sativum HOM05D006895 ORTHO05D008605 6.4e-06 56.2 174 27.6
Prupe.1G528200 Prunus persica HOM05D007660 ORTHO05D009442 6.4e-06 56.2 215 23.3
Thecc.02G002900 Theobroma cacao HOM05D007155 ORTHO05D003034 6.4e-06 56.2 151 25.8
CSS0016503 Camellia sinensis var. sinensis HOM05D007660 ORTHO05D009442 8.4e-06 55.8 220 22.7
Rhsim07G0001900 Rhododendron simsii HOM05D002986 ORTHO05D007611 8.4e-06 55.8 178 28.7
SGA_v2.0_scaffold43G16408 Striga asiatica HOM05D002986 ORTHO05D003966 8.4e-06 55.8 200 27.0


User provided reference genes

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