Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 0.0e+00 1281.9 705 100.0
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 0.0e+00 1143.6 708 88.0
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 3.6e-281 971.5 706 75.4
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 1.1e-221 773.9 709 61.4
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 9.2e-221 770.8 727 59.1
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 6.2e-217 758.1 707 60.7
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 4.6e-196 688.7 717 54.8
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 8.1e-193 677.9 714 57.3
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 1.4e-189 667.2 714 56.6
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 3.5e-188 662.5 718 52.5
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 1.5e-170 604.0 653 52.8
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.2e-156 557.8 726 47.4
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 1.6e-156 557.4 718 46.9
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 8.8e-155 551.6 715 46.0
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 4.4e-154 549.3 736 45.0
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 4.4e-154 549.3 736 48.2
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 4.4e-154 549.3 716 46.1
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 3.1e-152 543.1 720 47.2
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 4.1e-152 542.7 722 44.9
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.5e-151 539.7 719 46.3
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 3.8e-150 536.2 719 46.2
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 8.0e-148 528.5 714 44.4
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 6.7e-147 525.4 726 45.6
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.8e-145 520.0 719 45.5
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 3.7e-145 519.6 714 44.4
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.1e-144 518.1 714 44.3
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 4.1e-144 516.2 716 43.9
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 2.7e-143 513.5 732 45.8
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 1.3e-142 511.1 729 46.1
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 1.7e-142 510.8 746 43.2
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 1.1e-141 508.1 724 44.3
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 3.6e-140 503.1 602 49.0
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 2.0e-138 497.3 695 46.8
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 9.8e-138 495.0 723 43.4
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 8.3e-137 491.9 708 43.5
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.6e-135 487.6 696 46.0
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 2.9e-134 483.4 628 46.7
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 6.5e-134 482.3 715 42.8
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 1.9e-133 480.7 723 45.9
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 1.2e-132 478.0 719 42.3
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 2.8e-132 476.9 709 41.9
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.6e-132 476.5 721 42.3
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 6.1e-132 475.7 728 44.1
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 6.8e-131 472.2 721 43.3
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 9.8e-130 468.4 725 42.2
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 1.1e-128 464.9 713 44.6
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.4e-128 464.5 598 46.5
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 7.0e-128 462.2 730 40.5
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 2.7e-127 460.3 718 39.6
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 1.3e-126 458.0 732 41.4
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 2.3e-126 457.2 600 45.2
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 6.6e-126 455.7 748 40.5
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.5e-125 454.5 742 40.6
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 5.6e-125 452.6 534 48.9
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 7.3e-125 452.2 612 45.3
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 6.8e-123 445.7 578 45.5
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 8.9e-123 445.3 605 43.8
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 1.2e-122 444.9 601 45.3
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 1.1e-120 438.3 716 40.2
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 4.1e-120 436.4 720 39.4
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 3.5e-119 433.3 599 44.1
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 1.0e-118 431.8 601 44.4
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 1.9e-117 427.6 714 41.2
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 7.3e-117 425.6 716 39.2
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 9.5e-117 425.2 716 39.1
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 3.6e-116 423.3 715 38.9
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 1.8e-115 421.0 606 43.4
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 2.3e-115 420.6 606 43.4
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 3.1e-115 420.2 785 37.8
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 4.0e-115 419.9 600 43.5
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 2.0e-114 417.5 608 42.4
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.4e-114 416.8 604 44.0
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 1.1e-112 411.8 711 40.1
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.4e-112 411.4 595 42.0
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 1.9e-112 411.0 603 42.3
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 6.0e-111 406.0 604 41.2
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 4.3e-109 399.8 714 37.4
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 1.6e-108 397.9 591 42.5
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 5.2e-107 392.9 695 37.1
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 3.4e-106 390.2 714 36.8
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 1.7e-105 387.9 604 41.4
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 2.2e-105 387.5 737 38.0
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 8.3e-105 385.6 525 45.0
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 1.1e-104 385.2 558 43.7
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.1e-103 380.9 600 42.0
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 2.3e-102 377.5 692 38.2
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 6.2e-100 369.4 707 35.8
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 2.2e-97 360.9 603 39.8
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 4.9e-97 359.8 699 36.6
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 1.1e-96 358.6 712 36.8
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 6.0e-95 352.8 591 40.1
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 1.7e-94 351.3 487 42.7
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 2.3e-94 350.9 653 38.0
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 1.1e-93 348.6 719 38.4
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 5.6e-93 346.3 617 38.1
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 9.6e-93 345.5 476 46.8
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 1.2e-92 345.1 637 38.0
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.1e-88 332.0 514 44.7
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 7.1e-88 329.3 374 49.5
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 1.6e-84 318.2 611 35.5
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 6.2e-84 316.2 404 45.8
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 3.1e-83 313.9 485 41.2
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 9.0e-83 312.4 614 36.5
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 2.1e-79 301.2 653 33.2
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 3.7e-76 290.4 480 40.0
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 4.8e-76 290.0 599 34.9
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 4.9e-73 280.0 658 31.9
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 6.4e-73 279.6 603 36.2
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 2.4e-72 277.7 670 32.1
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 3.0e-70 270.8 378 42.9
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 8.7e-70 269.2 528 37.3
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.1e-68 264.6 472 37.5
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 8.2e-68 262.7 419 41.1
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 2.2e-65 254.6 674 31.5
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 2.9e-65 254.2 634 32.2
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 2.1e-63 248.1 681 30.0
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 2.1e-63 248.1 681 30.0
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 2.5e-61 241.1 594 33.2
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 3.7e-60 237.3 498 35.5
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.1e-59 234.2 597 31.3
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 2.0e-58 231.5 500 34.6
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 8.5e-49 199.5 360 34.2
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.5e-42 178.7 445 32.4
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 1.0e-38 166.0 226 42.5
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 1.5e-37 162.2 163 50.3
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 2.8e-36 157.9 227 41.9
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.5e-34 151.0 222 40.1
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.2e-33 148.3 233 41.2
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 3.8e-33 147.5 234 38.5
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 7.2e-32 143.3 159 49.1
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 5.2e-30 137.1 102 71.6
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.5e-29 135.6 163 41.1
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.3e-28 132.5 390 30.0
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 4.8e-28 130.6 227 37.0
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 6.3e-28 130.2 391 30.9
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 8.2e-28 129.8 237 39.7
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.1e-27 129.4 331 33.2
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 4.5e-26 124.0 241 39.0
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.0e-25 122.9 150 42.7
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 6.5e-25 120.2 107 51.4
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 4.2e-24 117.5 196 35.7
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 8.8e-22 109.8 387 28.2
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 1.3e-20 105.9 130 44.6
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 2.2e-20 105.1 389 27.0
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 2.0e-18 98.6 197 37.6
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 1.1e-16 92.8 323 28.5
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 1.9e-16 92.0 66 62.1
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 3.3e-16 91.3 103 45.6
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 5.5e-16 90.5 127 43.3
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.0e-14 84.7 82 46.3
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 5.2e-14 84.0 142 39.4
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 8.9e-14 83.2 127 37.0
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.4e-13 81.3 164 36.6
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.7e-12 77.8 46 69.6
QL06p009809 Quercus lobata HOM05D004086 ORTHO05D004641 1.8e-11 75.5 82 51.2
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 1.8e-11 75.5 88 43.2
Zm00001eb176250 Zea mays HOM05D004086 ORTHO05D004641 2.4e-11 75.1 141 32.6
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.2e-10 72.8 80 43.8
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 2.0e-10 72.0 157 31.8
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 2.7e-10 71.6 103 41.7
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.9e-09 68.2 82 42.7
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 3.8e-09 67.8 102 39.2
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 7.3e-08 63.5 647 21.6
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 8.0e-07 60.1 130 30.0
Os08g0268900 Oryza sativa ssp. japonica HOM05D004086 ORTHO05D004641 2.3e-06 58.5 115 29.6
HPP92_015986 Vanilla planifolia HOM05D004086 ORTHO05D004641 6.8e-06 57.0 124 35.5


User provided reference genes

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