Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G040000 Phaseolus vulgaris HOM05D003449 ORTHO05D004133 1.9e-242 842.0 417 100.0
Phvul.002G039900 Phaseolus vulgaris HOM05D003449 ORTHO05D004133 6.3e-185 651.0 372 86.0
Phvul.007G277700 Phaseolus vulgaris HOM05D003449 ORTHO05D004133 1.4e-171 606.7 368 81.8
Phvul.007G074100 Phaseolus vulgaris HOM05D003449 ORTHO05D004133 8.8e-171 604.0 356 84.3
VMungo1215G1665 Vigna mungo HOM05D003449 ORTHO05D004133 3.8e-166 588.6 356 81.5
Glyma.11G010700 Glycine max HOM05D003449 ORTHO05D004133 5.2e-163 578.2 365 78.4
Lj6g0003881 Lotus japonicus HOM05D003449 ORTHO05D004133 3.3e-149 532.3 367 72.2
LjContig00222g0025650 Lotus japonicus HOM05D003449 ORTHO05D004133 4.7e-148 528.5 367 71.7
arahy.Tifrunner.gnm1.ann1.4WT42H Arachis hypogaea HOM05D003449 ORTHO05D004133 4.4e-146 521.9 356 71.1
arahy.Tifrunner.gnm1.ann1.D2PEHJ Arachis hypogaea HOM05D003449 ORTHO05D004133 1.3e-145 520.4 356 71.6
arahy.Tifrunner.gnm1.ann1.MLK5V4 Arachis hypogaea HOM05D003449 ORTHO05D004133 8.3e-145 517.7 356 71.3
Medtr3g029520 Medicago truncatula HOM05D003449 ORTHO05D004133 1.7e-134 483.4 357 69.2
Lalb_Chr09g0320201 Lupinus albus HOM05D003449 ORTHO05D004133 5.1e-134 481.9 363 66.9
Ca_14797_v3 Cicer arietinum L. HOM05D003449 ORTHO05D004133 1.1e-133 480.7 357 68.9
TPR.G12250 Trifolium pratense HOM05D003449 ORTHO05D004133 1.1e-133 480.7 364 68.1
Ca_14410_v3 Cicer arietinum L. HOM05D003449 ORTHO05D004133 1.1e-131 474.2 357 68.1
Prupe.7G270600 Prunus persica HOM05D003449 ORTHO05D004133 1.2e-124 450.7 374 61.0
Cfa008526 Carpinus fangiana HOM05D003449 ORTHO05D004133 6.4e-121 438.3 392 57.7
Haze_11115 Corylus avellana HOM05D003449 ORTHO05D004133 1.1e-120 437.6 360 61.7
QL10p065753 Quercus lobata HOM05D003449 ORTHO05D004133 2.1e-119 433.3 375 59.5
QL10p064632 Quercus lobata HOM05D003449 ORTHO05D004133 4.6e-119 432.2 375 59.5
Sc25g0002200 Simmondsia chinensis HOM05D003449 ORTHO05D004133 2.8e-116 422.9 375 56.8
CSS0013125 Camellia sinensis var. sinensis HOM05D003449 ORTHO05D004133 4.8e-116 422.2 375 58.1
CANSAT54G1991 Cannabis sativa HOM05D003449 ORTHO05D004133 1.1e-115 421.0 372 57.5
CSS0049757 Camellia sinensis var. sinensis HOM05D003449 ORTHO05D004133 1.4e-115 420.6 375 57.9
CSS0008419 Camellia sinensis var. sinensis HOM05D003449 ORTHO05D004133 4.0e-115 419.1 374 57.2
Atru.chr8.1212 Acer truncatum HOM05D003449 ORTHO05D004133 9.0e-115 417.9 379 56.2
Gohir.D01G221700 Gossypium hirsutum HOM05D003449 ORTHO05D004133 3.4e-114 416.0 357 59.1
Gorai.002G268300 Gossypium raimondii HOM05D003449 ORTHO05D004133 3.4e-114 416.0 357 59.1
GSVIVG01038259001 Vitis vinifera HOM05D003449 ORTHO05D004133 3.4e-114 416.0 374 57.0
PSO675G3012 Papaver somniferum HOM05D003449 ORTHO05D004133 9.9e-114 414.5 363 55.9
Gohir.A01G231600 Gossypium hirsutum HOM05D003449 ORTHO05D004133 1.7e-113 413.7 357 58.8
EL10Ac3g06174 Beta vulgaris HOM05D003449 ORTHO05D004133 2.9e-113 412.9 365 57.3
Atru.chr8.1215 Acer truncatum HOM05D003449 ORTHO05D004133 3.8e-113 412.5 376 56.1
Peaxi162Scf00459g00129 Petunia axillaris HOM05D003449 ORTHO05D004133 4.9e-113 412.1 370 56.2
FAN28G2575 Fragaria x ananassa HOM05D003449 ORTHO05D004133 6.4e-113 411.8 359 57.4
MD15G1142600 Malus domestica HOM05D003449 ORTHO05D004133 1.1e-112 411.0 380 56.3
FvH4_6g52520 Fragaria vesca HOM05D003449 ORTHO05D004133 3.2e-112 409.5 356 57.3
TWI63G1020 Tripterygium wilfordii HOM05D003449 ORTHO05D004133 3.2e-112 409.5 386 56.7
Nn1g09408 Nelumbo nucifera HOM05D003449 ORTHO05D004133 4.2e-112 409.1 372 57.3
Dinv24747 Davidia involucrata HOM05D003449 ORTHO05D004133 5.4e-112 408.7 373 56.6
Sopen12g008760 Solanum pennellii HOM05D003449 ORTHO05D004133 5.4e-112 408.7 371 55.0
Ah.07g203300 Amaranthus hybridus HOM05D003449 ORTHO05D004133 9.3e-112 407.9 366 55.7
RcHm_v2.0_Chr2g0084431 Rosa chinensis HOM05D003449 ORTHO05D004133 9.3e-112 407.9 356 56.5
FAN05G5719 Fragaria x ananassa HOM05D003449 ORTHO05D004133 4.6e-111 405.6 359 57.1
PGR042G0752 Punica granatum HOM05D003449 ORTHO05D004133 4.6e-111 405.6 362 56.6
Sed0014321 Sechium edule HOM05D003449 ORTHO05D004133 6.0e-111 405.2 363 55.9
SGA_v2.0_scaffold319G48551 Striga asiatica HOM05D003449 ORTHO05D004133 7.9e-111 404.8 357 57.1
CAN.G1011.3 Capsicum annuum HOM05D003449 ORTHO05D004133 5.1e-110 402.1 372 54.6
CsaV3_2G011270 Cucumis sativus L. HOM05D003449 ORTHO05D004133 1.5e-109 400.6 356 56.7
Cc03_g16150 Coffea canephora HOM05D003449 ORTHO05D004133 1.9e-109 400.2 374 55.1
CAN.G566.43 Capsicum annuum HOM05D003449 ORTHO05D004133 1.6e-108 397.1 370 54.1
HanXRQChr11g0343511 Helianthus annuus HOM05D003449 ORTHO05D004133 1.6e-108 397.1 354 57.3
Actinidia18391 Actinidia chinensis HOM05D003449 ORTHO05D004133 2.8e-108 396.4 374 54.8
Lsat_1_v5_gn_1_77061 Lactuca sativa HOM05D003449 ORTHO05D004133 2.8e-108 396.4 354 55.9
Migut.G00914 Erythranthe guttata HOM05D003449 ORTHO05D004133 3.7e-108 396.0 359 56.8
Eucgr.A00416 Eucalyptus grandis HOM05D003449 ORTHO05D004133 3.7e-108 396.0 371 54.7
FAN14G1536 Fragaria x ananassa HOM05D003449 ORTHO05D004133 1.4e-107 394.0 359 56.0
Potri.017G002000 Populus trichocarpa HOM05D003449 ORTHO05D004133 1.8e-107 393.7 367 56.1
Sabra07G0115300 Salix brachista HOM05D003449 ORTHO05D004133 1.8e-107 393.7 372 55.6
Ciclev10019560m.g Citrus clementina HOM05D003449 ORTHO05D004133 3.1e-107 392.9 372 54.6
Aqoxy4G00018 Aquilegia oxysepala HOM05D003449 ORTHO05D004133 4.0e-107 392.5 371 53.4
EL10Ac3g06177 Beta vulgaris HOM05D003449 ORTHO05D004133 6.9e-107 391.7 365 55.6
Potri.007G145800 Populus trichocarpa HOM05D003449 ORTHO05D004133 1.5e-106 390.6 378 55.8
PGSC0003DMG400029361 Solanum tuberosum HOM05D003449 ORTHO05D004133 5.8e-106 388.7 367 54.5
THA.LOC104800936 Tarenaya hassleriana HOM05D003449 ORTHO05D004133 7.6e-106 388.3 361 55.1
Nitab4.5_0001110g0060 Nicotiana tabacum HOM05D003449 ORTHO05D004133 1.3e-105 387.5 405 51.1
THA.LOC104800934 Tarenaya hassleriana HOM05D003449 ORTHO05D004133 2.9e-105 386.3 354 54.2
PGR031G2246 Punica granatum HOM05D003449 ORTHO05D004133 3.8e-105 386.0 365 53.7
BraA04t17976Z Brassica rapa HOM05D003449 ORTHO05D004133 8.4e-105 384.8 370 54.9
A04p24550 Brassica napus HOM05D003449 ORTHO05D004133 5.5e-104 382.1 370 54.3
BcaC02g07961 Brassica carinata HOM05D003449 ORTHO05D004133 7.1e-104 381.7 365 53.7
BcaB06g28571 Brassica carinata HOM05D003449 ORTHO05D004133 1.2e-103 380.9 371 53.6
CiPaw.01G202400 Carya illinoinensis HOM05D003449 ORTHO05D004133 2.1e-103 380.2 376 54.5
C04p61440 Brassica napus HOM05D003449 ORTHO05D004133 2.7e-103 379.8 366 53.8
BolC4t27628H Brassica oleracea HOM05D003449 ORTHO05D004133 2.7e-103 379.8 366 53.8
Oeu022914.1 Olea europaea HOM05D003449 ORTHO05D004133 2.7e-103 379.8 334 59.3
THA.LOC104800938 Tarenaya hassleriana HOM05D003449 ORTHO05D004133 2.7e-103 379.8 372 51.9
THA.LOC104800937 Tarenaya hassleriana HOM05D003449 ORTHO05D004133 3.5e-103 379.4 354 53.4
Oeu050305.2 Olea europaea HOM05D003449 ORTHO05D004133 6.0e-103 378.6 399 50.9
SHI01241 Sapria himalayana HOM05D003449 ORTHO05D004133 3.9e-102 375.9 374 52.1
SGA_v2.0_scaffold12G06234 Striga asiatica HOM05D003449 ORTHO05D004133 5.1e-102 375.6 352 54.0
ECA248G0698 Erigeron canadensis HOM05D003449 ORTHO05D004133 1.1e-101 374.4 330 58.5
SGA_v2.0_scaffold215G42309 Striga asiatica HOM05D003449 ORTHO05D004133 1.5e-101 374.0 337 57.3
CDE02G4666 Ceratophyllum demersum HOM05D003449 ORTHO05D004133 4.3e-101 372.5 384 51.0
Aa31LG5G5180 Aethionema arabicum HOM05D003449 ORTHO05D004133 5.6e-101 372.1 408 50.2
AL4G27160 Arabidopsis lyrata HOM05D003449 ORTHO05D004133 2.1e-100 370.2 383 51.2
Lj6C291G1 Lonicera japonica HOM05D003449 ORTHO05D004133 2.1e-100 370.2 348 56.3
MELO3C031172.2 Cucumis melo HOM05D003449 ORTHO05D004133 2.8e-100 369.8 363 53.4
SGA_v2.0_scaffold37G14903 Striga asiatica HOM05D003449 ORTHO05D004133 4.8e-100 369.0 366 53.3
Carub.0004s1301 Capsella rubella HOM05D003449 ORTHO05D004133 1.1e-99 367.9 352 54.3
EL10Ac1g02221 Beta vulgaris HOM05D003449 ORTHO05D004133 2.4e-99 366.7 354 52.3
ATR0743G113 Amborella trichopoda HOM05D003449 ORTHO05D004133 3.1e-99 366.3 399 50.6
Carub.0004s1316 Capsella rubella HOM05D003449 ORTHO05D004133 3.1e-99 366.3 363 51.8
Thhalv10016528m.g Eutrema salsugineum HOM05D003449 ORTHO05D004133 6.9e-99 365.2 355 52.4
AT2G31865 Arabidopsis thaliana HOM05D003449 ORTHO05D004133 1.5e-98 364.0 360 51.4
Zm00001eb064190 Zea mays HOM05D003449 ORTHO05D004133 2.0e-98 363.6 344 52.0
BraA04t17933Z Brassica rapa HOM05D003449 ORTHO05D004133 2.6e-98 363.2 355 52.1
Nitab4.5_0000160g0010 Nicotiana tabacum HOM05D003449 ORTHO05D004133 2.6e-98 363.2 357 54.3
AT2G31870 Arabidopsis thaliana HOM05D003449 ORTHO05D004133 7.6e-98 361.7 383 50.7
Thhalv10017878m.g Eutrema salsugineum HOM05D003449 ORTHO05D004133 7.6e-98 361.7 372 50.3
Sp4g14220 Schrenkiella parvula HOM05D003449 ORTHO05D004133 1.3e-97 360.9 372 50.5
MBI07_g42065_MAGBIO Magnolia biondii HOM05D003449 ORTHO05D004133 1.7e-97 360.5 397 50.6
BcaB06g28570 Brassica carinata HOM05D003449 ORTHO05D004133 2.9e-97 359.8 344 52.6
C04p60860 Brassica napus HOM05D003449 ORTHO05D004133 4.9e-97 359.0 351 51.3
Sp2g03830 Schrenkiella parvula HOM05D003449 ORTHO05D004133 2.5e-96 356.7 350 52.6
AL4G27150 Arabidopsis lyrata HOM05D003449 ORTHO05D004133 4.2e-96 355.9 355 51.8
SalBow3G3320 Salvia bowleyana HOM05D003449 ORTHO05D004133 5.5e-96 355.5 321 57.6
BcaC02g07962 Brassica carinata HOM05D003449 ORTHO05D004133 9.3e-96 354.8 349 51.9
C04p61430 Brassica napus HOM05D003449 ORTHO05D004133 9.3e-96 354.8 349 51.9
BolC4t27627H Brassica oleracea HOM05D003449 ORTHO05D004133 9.3e-96 354.8 349 51.9
Rhsim02G0176000 Rhododendron simsii HOM05D003449 ORTHO05D004133 9.3e-96 354.8 472 43.2
AUR62023816 Chenopodium quinoa HOM05D003449 ORTHO05D004133 1.2e-95 354.4 351 48.7
C04p17950 Brassica napus HOM05D003449 ORTHO05D004133 2.7e-95 353.2 353 52.4
BraA04t17975Z Brassica rapa HOM05D003449 ORTHO05D004133 2.7e-95 353.2 357 50.7
BcaC02g11292 Brassica carinata HOM05D003449 ORTHO05D004133 4.6e-95 352.4 353 52.4
SEGI_19112 Sequoiadendron giganteum HOM05D003449 ORTHO05D004133 4.6e-95 352.4 363 49.9
CARHR125540 Cardamine hirsuta HOM05D003449 ORTHO05D004133 7.9e-95 351.7 340 51.5
Carub.0004s1315 Capsella rubella HOM05D003449 ORTHO05D004133 1.0e-94 351.3 354 51.4
Sabra17G0006000 Salix brachista HOM05D003449 ORTHO05D004133 1.0e-94 351.3 373 51.5
HPP92_007025 Vanilla planifolia HOM05D003449 ORTHO05D004133 6.7e-94 348.6 357 51.3
Duzib128G1428 Durio zibethinus HOM05D003449 ORTHO05D004133 1.9e-93 347.1 357 51.8
HPP92_007075 Vanilla planifolia HOM05D003449 ORTHO05D004133 1.9e-93 347.1 357 50.7
BolC4t23342H Brassica oleracea HOM05D003449 ORTHO05D004133 3.3e-93 346.3 335 53.7
Ah.06g182940 Amaranthus hybridus HOM05D003449 ORTHO05D004133 9.7e-93 344.7 380 48.2
BolC4t27577H Brassica oleracea HOM05D003449 ORTHO05D004133 9.7e-93 344.7 357 49.9
COL.COLO4_20652 Corchorus olitorius HOM05D003449 ORTHO05D004133 1.3e-92 344.4 341 54.3
A05p13710 Brassica napus HOM05D003449 ORTHO05D004133 2.1e-92 343.6 353 52.1
PSO675G3785 Papaver somniferum HOM05D003449 ORTHO05D004133 2.8e-92 343.2 358 48.9
BcaB02g10421 Brassica carinata HOM05D003449 ORTHO05D004133 8.2e-92 341.7 354 50.0
BraA05t20307Z Brassica rapa HOM05D003449 ORTHO05D004133 5.9e-90 335.5 353 51.6
AUR62002371 Chenopodium quinoa HOM05D003449 ORTHO05D004133 3.8e-89 332.8 364 47.0
FAN23G2573 Fragaria x ananassa HOM05D003449 ORTHO05D004133 1.6e-87 327.4 288 58.0
Nitab4.5_0003108g0040 Nicotiana tabacum HOM05D003449 ORTHO05D004133 2.7e-87 326.6 354 51.4
DCAR_011557 Daucus carota HOM05D003449 ORTHO05D004133 4.6e-87 325.9 302 55.3
FAN26G2706 Fragaria x ananassa HOM05D003449 ORTHO05D004133 1.8e-86 323.9 288 57.3
Peaxi162Scf00057g02231 Petunia axillaris HOM05D003449 ORTHO05D004133 2.3e-86 323.6 363 49.9
BcaB06g28530 Brassica carinata HOM05D003449 ORTHO05D004133 1.9e-85 320.5 312 51.9
Sopen12g032430 Solanum pennellii HOM05D003449 ORTHO05D004133 7.4e-85 318.5 302 55.6
Aa31sc989G10 Aethionema arabicum HOM05D003449 ORTHO05D004133 9.7e-85 318.2 303 54.8
Carub.0004s1317 Capsella rubella HOM05D003449 ORTHO05D004133 1.8e-83 313.9 322 53.1
Nitab4.5_0007046g0010 Nicotiana tabacum HOM05D003449 ORTHO05D004133 2.6e-82 310.1 362 48.9
CARHR125360 Cardamine hirsuta HOM05D003449 ORTHO05D004133 4.5e-82 309.3 292 53.4
Manes.05G207700 Manihot esculenta HOM05D003449 ORTHO05D004133 2.2e-81 307.0 298 56.0
SMO364G0163 Selaginella moellendorffii HOM05D003449 ORTHO05D004133 2.5e-80 303.5 361 46.8
CARHR125550 Cardamine hirsuta HOM05D003449 ORTHO05D004133 7.2e-80 302.0 293 52.9
AL4G27130 Arabidopsis lyrata HOM05D003449 ORTHO05D004133 7.9e-79 298.5 352 47.2
A04p24530 Brassica napus HOM05D003449 ORTHO05D004133 1.5e-77 294.3 295 51.5
vmacro17029 Vaccinium macrocarpon HOM05D003449 ORTHO05D004133 3.3e-77 293.1 313 51.8
AUR62002491 Chenopodium quinoa HOM05D003449 ORTHO05D004133 1.1e-75 288.1 522 36.6
SMO351G0652 Selaginella moellendorffii HOM05D003449 ORTHO05D004133 2.6e-74 283.5 340 45.0
Solyc12g017920.3 Solanum lycopersicum HOM05D003449 ORTHO05D004133 5.9e-74 282.3 256 56.2
CBR_g41704 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-73 281.2 497 36.0
Pp3c4_17510 Physcomitrium patens HOM05D003449 ORTHO05D004133 1.4e-72 277.7 376 40.4
Mapoly0009s0113 Marchantia polymorpha HOM05D003449 ORTHO05D004133 5.7e-69 265.8 367 39.2
A04p24130 Brassica napus HOM05D003449 ORTHO05D004133 1.7e-68 264.2 210 59.0
Hund22678 Selenicereus undatus HOM05D003449 ORTHO05D004133 4.8e-68 262.7 288 52.4
BcaB06g28446 Brassica carinata HOM05D003449 ORTHO05D004133 1.4e-67 261.2 338 43.2
FvH4_1g00120 Fragaria vesca HOM05D003449 ORTHO05D004133 2.4e-67 260.4 215 60.0
Thecc.05G001100 Theobroma cacao HOM05D003449 ORTHO05D004133 2.6e-66 256.9 202 63.9
Pp3c3_12290 Physcomitrium patens HOM05D003449 ORTHO05D004133 5.9e-66 255.8 337 40.1
ClCG06G009820 Citrullus lanatus HOM05D003449 ORTHO05D004133 1.3e-65 254.6 194 64.9
Thhalv10016696m.g Eutrema salsugineum HOM05D003449 ORTHO05D004133 1.2e-63 248.1 204 59.8
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 8.0e-63 245.4 245 52.2
Cpa.g.sc9.246 Carica papaya HOM05D003449 ORTHO05D004133 2.3e-62 243.8 308 46.4
Solyc12g096610.2 Solanum lycopersicum HOM05D003449 ORTHO05D004133 3.1e-59 233.4 219 53.0
TAR362G0102 Trochodendron aralioides HOM05D003449 ORTHO05D003376 1.2e-55 221.5 213 57.3
Ca_14388_v3 Cicer arietinum L. HOM05D003449 ORTHO05D004133 1.7e-52 211.1 167 67.1
Rhsim09G0002700 Rhododendron simsii HOM05D003449 ORTHO05D004133 4.9e-44 183.0 147 62.6
AUR62023694 Chenopodium quinoa HOM05D003449 ORTHO05D004133 5.9e-42 176.0 146 58.9
AUR62023697 Chenopodium quinoa HOM05D003449 ORTHO05D004133 2.3e-41 174.1 178 51.1
Ca_14389_v3 Cicer arietinum L. HOM05D003449 ORTHO05D004133 5.2e-30 136.3 124 55.6
CARHR125560 Cardamine hirsuta HOM05D003449 ORTHO05D004133 2.5e-24 117.5 104 51.0
Gohir.D04G099801 Gossypium hirsutum HOM05D003449 ORTHO05D004133 3.3e-24 117.1 108 56.5
Glyma.15G017200 Glycine max HOM05D003449 ORTHO05D214706 2.5e-16 90.9 234 32.5
ClCG06G009800 Citrullus lanatus HOM05D003449 ORTHO05D004133 1.8e-14 84.7 106 46.2
Gorai.009G402700 Gossypium raimondii HOM05D003449 ORTHO05D004133 6.8e-14 82.8 70 60.0
MD02G1000300 Malus domestica HOM05D003449 ORTHO05D004133 3.4e-13 80.5 68 57.4
EL10Ac4g08586 Beta vulgaris HOM05D003449 ORTHO05D000563 3.2e-11 73.9 67 56.7
unitig_92.g28209 Utricularia gibba HOM05D003449 ORTHO05D004133 9.2e-11 72.4 62 46.8
Os03g0843900 Oryza sativa ssp. japonica HOM05D003449 ORTHO05D004133 5.1e-09 66.6 70 44.3
PSO302G0027 Papaver somniferum HOM05D003449 ORTHO05D050192 2.5e-08 64.3 42 78.6
CARHR125370 Cardamine hirsuta HOM05D003449 ORTHO05D004133 2.8e-07 60.8 59 45.8
Sp2g03840 Schrenkiella parvula HOM05D003449 ORTHO05D050192 2.8e-07 60.8 62 56.5


User provided reference genes

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