Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 0.0e+00 1239.6 595 100.0
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 0.0e+00 1102.0 647 83.0
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 6.0e-298 1026.9 656 77.1
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 2.0e-245 852.4 645 64.2
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 1.6e-242 842.8 645 63.6
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 1.8e-241 839.3 651 62.8
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 3.5e-237 825.1 658 63.4
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 6.8e-233 810.8 662 61.3
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 2.0e-232 809.3 651 61.4
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 2.8e-231 805.4 651 61.1
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 3.5e-229 798.5 655 60.5
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 3.5e-229 798.5 655 60.5
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 7.8e-229 797.3 661 61.0
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 1.6e-226 789.6 661 59.6
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 2.0e-221 772.7 654 59.6
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 3.7e-215 751.9 652 55.8
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 8.3e-215 750.7 647 56.0
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 1.4e-214 750.0 651 56.7
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 2.1e-213 746.1 650 54.9
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 1.7e-212 743.0 648 56.0
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 3.0e-212 742.3 650 54.8
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 3.9e-212 741.9 648 55.4
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 5.1e-212 741.5 647 55.6
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 3.3e-211 738.8 649 54.9
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 4.3e-211 738.4 649 54.9
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 1.1e-209 733.8 649 54.1
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 1.2e-208 730.3 649 55.3
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 2.6e-208 729.2 649 54.7
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 1.9e-206 723.0 649 54.1
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 5.4e-206 721.5 644 54.5
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 5.4e-206 721.5 647 54.4
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 7.1e-206 721.1 649 54.4
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 1.2e-205 720.3 648 54.3
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 1.7e-204 716.5 649 54.1
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 3.0e-204 715.7 645 54.6
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.5e-203 712.6 645 54.6
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 7.3e-203 711.1 649 52.9
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 9.6e-203 710.7 648 54.0
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 3.6e-202 708.8 645 53.5
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 1.4e-201 706.8 649 52.1
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 4.4e-200 701.8 650 52.8
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 7.6e-200 701.0 646 51.7
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 3.8e-199 698.7 649 52.2
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 3.2e-198 695.7 618 55.5
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 6.0e-197 691.4 650 52.5
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 7.8e-197 691.0 645 52.4
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 1.3e-196 690.3 650 53.1
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 2.3e-196 689.5 617 54.9
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 5.1e-196 688.3 689 49.2
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 8.7e-196 687.6 650 52.2
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 1.1e-195 687.2 611 54.5
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 1.3e-194 683.7 646 51.5
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 4.0e-193 678.7 646 52.8
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 1.5e-192 676.8 660 50.9
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 2.6e-192 676.0 645 51.6
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 7.6e-192 674.5 646 52.6
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 1.1e-190 670.6 624 53.4
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 5.4e-190 668.3 651 51.5
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 7.1e-190 667.9 641 52.1
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 7.9e-189 664.5 650 50.5
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.5e-187 660.2 622 53.4
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 5.6e-187 658.3 645 51.2
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 1.6e-186 656.8 648 50.3
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 2.8e-186 656.0 646 50.3
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 6.2e-186 654.8 652 49.7
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 3.4e-184 649.0 651 51.5
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 6.4e-183 644.8 630 52.4
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 3.2e-182 642.5 648 48.6
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 1.6e-181 640.2 581 53.7
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 2.1e-181 639.8 595 53.4
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 3.3e-179 632.5 646 48.9
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 4.0e-177 625.5 639 48.4
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 9.0e-177 624.4 647 47.8
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 4.9e-175 618.6 630 49.7
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 2.1e-173 613.2 619 50.7
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 4.6e-173 612.1 640 48.6
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 3.9e-172 609.0 655 46.4
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 2.0e-168 596.7 642 46.4
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 3.8e-167 592.4 617 48.5
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 4.6e-165 585.5 648 46.1
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 1.8e-164 583.6 648 46.0
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.1e-163 580.9 580 49.5
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 8.2e-162 574.7 646 43.7
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 1.1e-161 574.3 655 46.1
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 3.4e-160 569.3 630 46.2
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 6.1e-157 558.5 668 43.1
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 2.2e-154 550.1 580 46.4
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 2.0e-152 543.5 597 45.6
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 4.2e-150 535.8 479 54.7
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 1.4e-145 520.8 380 70.8
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 1.6e-144 517.3 601 46.4
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 1.7e-143 513.8 448 55.4
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 8.8e-132 474.9 364 59.3
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 9.1e-129 464.9 503 47.3
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 1.1e-126 458.0 600 43.5
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 3.3e-118 429.9 687 36.5
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 2.9e-90 337.0 305 49.2
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 1.1e-89 335.1 316 57.3
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 3.4e-75 287.0 619 30.2
PGSC0003DMG400035426 Solanum tuberosum HOM05D006404 ORTHO05D008170 7.4e-62 242.7 207 54.6
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 1.3e-61 241.9 217 52.1
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 5.5e-49 199.9 174 58.0
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 3.3e-30 137.5 108 63.9
PGSC0003DMG400025695 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.6e-27 128.6 91 59.3
HPP92_012439 Vanilla planifolia HOM05D006404 ORTHO05D008170 1.1e-17 95.9 209 32.5
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 3.0e-07 61.2 50 58.0


User provided reference genes

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