Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G033700 Phaseolus vulgaris HOM05D001749 ORTHO05D001632 1.4e-79 299.7 161 100.0
VMungo1215G0703 Vigna mungo HOM05D001749 ORTHO05D001632 2.5e-57 225.7 179 74.3
Glyma.01G171700 Glycine max HOM05D001749 ORTHO05D001632 6.0e-35 151.4 183 51.9
Medtr5g020900 Medicago truncatula HOM05D001749 ORTHO05D001632 5.0e-29 131.7 169 52.7
Lj2g0012061 Lotus japonicus HOM05D001749 ORTHO05D001632 6.1e-27 124.8 154 53.2
Psat2g157560 Pisum sativum HOM05D001749 ORTHO05D001632 1.7e-24 116.7 172 49.4
Phvul.003G255700 Phaseolus vulgaris HOM05D001749 ORTHO05D001632 2.2e-24 116.3 176 47.2
Ca_22298_v3 Cicer arietinum L. HOM05D001749 ORTHO05D001632 8.2e-24 114.4 203 42.4
Ca_22328_v3 Cicer arietinum L. HOM05D001749 ORTHO05D001632 8.2e-24 114.4 203 42.4
Psat4g095000 Pisum sativum HOM05D001749 ORTHO05D001632 6.9e-23 111.3 213 39.9
Lalb_Chr16g0377721 Lupinus albus HOM05D001749 ORTHO05D001632 3.4e-22 109.0 186 43.5
Medtr8g077085 Medicago truncatula HOM05D001749 ORTHO05D001632 7.7e-22 107.8 214 38.8
Lalb_Chr16g0391051 Lupinus albus HOM05D001749 ORTHO05D001632 1.0e-21 107.5 200 42.0
Glyma.02G054400 Glycine max HOM05D001749 ORTHO05D001632 1.3e-21 107.1 198 43.9
VMungo0251G1101 Vigna mungo HOM05D001749 ORTHO05D001632 5.0e-21 105.1 197 42.6
TPR.G14237 Trifolium pratense HOM05D001749 ORTHO05D001632 1.1e-20 104.0 208 39.4
Glyma.16G134800 Glycine max HOM05D001749 ORTHO05D001632 1.2e-19 100.5 214 39.7
Lj4g0011278 Lotus japonicus HOM05D001749 ORTHO05D001632 3.9e-18 95.5 223 36.8
Cpa.g.sc1139.1 Carica papaya HOM05D001749 ORTHO05D001632 9.1e-15 84.3 249 30.9
Gorai.011G100900 Gossypium raimondii HOM05D001749 ORTHO05D001632 1.3e-13 80.5 221 33.0
Thecc.01G031200 Theobroma cacao HOM05D001749 ORTHO05D001632 2.2e-13 79.7 208 34.6
Gohir.A12G063300 Gossypium hirsutum HOM05D001749 ORTHO05D001632 3.8e-13 79.0 228 33.8
Gohir.D10G091900 Gossypium hirsutum HOM05D001749 ORTHO05D001632 8.5e-13 77.8 221 32.6
THA.LOC104819200 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 8.5e-13 77.8 238 31.9
TAR625G0803 Trochodendron aralioides HOM05D001749 ORTHO05D001632 1.1e-12 77.4 201 34.3
TAR628G1444 Trochodendron aralioides HOM05D001749 ORTHO05D001632 1.1e-12 77.4 234 33.3
Gohir.A10G096200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 1.4e-12 77.0 221 32.1
Gohir.D12G063200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 1.9e-12 76.6 222 33.3
Gorai.008G066400 Gossypium raimondii HOM05D001749 ORTHO05D001632 1.9e-12 76.6 222 33.8
THA.LOC104826664 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 1.9e-12 76.6 242 29.8
CiPaw.02G020500 Carya illinoinensis HOM05D001749 ORTHO05D001632 2.5e-12 76.3 221 33.0
FAN19G1879 Fragaria x ananassa HOM05D001749 ORTHO05D001632 2.5e-12 76.3 232 34.5
Sp2g30290 Schrenkiella parvula HOM05D001749 ORTHO05D001632 2.5e-12 76.3 213 32.4
RcHm_v2.0_Chr2g0100901 Rosa chinensis HOM05D001749 ORTHO05D001632 3.2e-12 75.9 245 30.6
GSVIVG01018920001 Vitis vinifera HOM05D001749 ORTHO05D001632 3.2e-12 75.9 194 31.4
COL.COLO4_22034 Corchorus olitorius HOM05D001749 ORTHO05D001632 4.2e-12 75.5 229 33.2
Hma1.2p1_0224F.1_g094445 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 4.2e-12 75.5 221 32.1
Hma1.2p1_2993F.1_g331370 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 4.2e-12 75.5 221 32.1
Nitab4.5_0003001g0010 Nicotiana tabacum HOM05D001749 ORTHO05D001632 4.2e-12 75.5 241 31.1
FAN28G1045 Fragaria x ananassa HOM05D001749 ORTHO05D001632 7.2e-12 74.7 230 33.9
Gorai.007G201500 Gossypium raimondii HOM05D001749 ORTHO05D001632 7.2e-12 74.7 219 33.3
Nn5g29676 Nelumbo nucifera HOM05D001749 ORTHO05D001632 7.2e-12 74.7 232 31.9
FvH4_1g12780 Fragaria vesca HOM05D001749 ORTHO05D001632 9.4e-12 74.3 232 34.1
CSS0035839 Camellia sinensis var. sinensis HOM05D001749 ORTHO05D001632 1.2e-11 73.9 222 32.4
Aa31LG1G14960 Aethionema arabicum HOM05D001749 ORTHO05D001632 1.6e-11 73.6 231 29.9
Eucgr.I01283 Eucalyptus grandis HOM05D001749 ORTHO05D001632 1.6e-11 73.6 225 32.4
FAN23G0952 Fragaria x ananassa HOM05D001749 ORTHO05D001632 2.7e-11 72.8 231 33.8
Duzib187G2007 Durio zibethinus HOM05D001749 ORTHO05D001632 3.6e-11 72.4 221 32.1
Gohir.A11G182600 Gossypium hirsutum HOM05D001749 ORTHO05D001632 4.7e-11 72.0 220 33.6
MBI16_g30353_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 6.1e-11 71.6 216 31.0
Nitab4.5_0001617g0020 Nicotiana tabacum HOM05D001749 ORTHO05D001632 6.1e-11 71.6 241 29.0
THA.LOC104818171 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 8.0e-11 71.2 235 31.1
BraA01t02289Z Brassica rapa HOM05D001749 ORTHO05D001632 1.0e-10 70.9 243 32.1
CAN.G358.46 Capsicum annuum HOM05D001749 ORTHO05D001632 1.0e-10 70.9 243 29.6
Gohir.D11G189200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 1.0e-10 70.9 219 32.9
A07p17520 Brassica napus HOM05D001749 ORTHO05D001632 1.4e-10 70.5 228 30.7
BraA07t29472Z Brassica rapa HOM05D001749 ORTHO05D001632 1.4e-10 70.5 228 30.7
Duzib147G1275 Durio zibethinus HOM05D001749 ORTHO05D001632 1.4e-10 70.5 227 32.2
Ciclev10029211m.g Citrus clementina HOM05D001749 ORTHO05D001632 1.8e-10 70.1 222 29.7
MBI16_g08780_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 1.8e-10 70.1 217 31.3
Rhsim08G0119900 Rhododendron simsii HOM05D001749 ORTHO05D001632 1.8e-10 70.1 229 32.3
CARHR281310 Cardamine hirsuta HOM05D001749 ORTHO05D001632 2.3e-10 69.7 249 30.1
A01p23800 Brassica napus HOM05D001749 ORTHO05D001632 3.9e-10 68.9 243 31.7
Dinv23498 Davidia involucrata HOM05D001749 ORTHO05D001632 3.9e-10 68.9 202 30.7
Manes.02G096700 Manihot esculenta HOM05D001749 ORTHO05D001632 3.9e-10 68.9 256 28.1
C09p11860 Brassica napus HOM05D001749 ORTHO05D001632 5.2e-10 68.6 234 31.2
MBI10_g06727_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 5.2e-10 68.6 224 34.8
TAR381G0807 Trochodendron aralioides HOM05D001749 ORTHO05D001632 6.7e-10 68.2 229 29.7
BraA09t36645Z Brassica rapa HOM05D001749 ORTHO05D001632 8.8e-10 67.8 236 30.9
C07p25470 Brassica napus HOM05D001749 ORTHO05D001632 1.1e-09 67.4 233 30.0
C08p26160 Brassica napus HOM05D001749 ORTHO05D001632 1.1e-09 67.4 248 28.2
CSS0042795 Camellia sinensis var. sinensis HOM05D001749 ORTHO05D001632 1.1e-09 67.4 227 30.8
FAN26G1634 Fragaria x ananassa HOM05D001749 ORTHO05D001632 1.1e-09 67.4 215 32.6
BcaC06g34702 Brassica carinata HOM05D001749 ORTHO05D001632 1.5e-09 67.0 234 29.5
Duzib132G0910 Durio zibethinus HOM05D001749 ORTHO05D001632 1.5e-09 67.0 217 30.9
TWI79G0729 Tripterygium wilfordii HOM05D001749 ORTHO05D001632 1.5e-09 67.0 205 30.2
BcaB05g23254 Brassica carinata HOM05D001749 ORTHO05D001632 2.0e-09 66.6 242 31.0
BcaB05g23255 Brassica carinata HOM05D001749 ORTHO05D001632 2.0e-09 66.6 242 31.0
BcaC04g23126 Brassica carinata HOM05D001749 ORTHO05D001632 2.0e-09 66.6 234 30.8
BolC9t54075H Brassica oleracea HOM05D001749 ORTHO05D001632 2.0e-09 66.6 234 30.8
Nn1g04912 Nelumbo nucifera HOM05D001749 ORTHO05D001632 2.0e-09 66.6 236 32.2
QL06p047145 Quercus lobata HOM05D001749 ORTHO05D001632 2.0e-09 66.6 205 32.2
BcaC09g50057 Brassica carinata HOM05D001749 ORTHO05D001632 2.6e-09 66.2 243 31.3
C01p29520 Brassica napus HOM05D001749 ORTHO05D001632 2.6e-09 66.2 243 31.3
BolC1t02894H Brassica oleracea HOM05D001749 ORTHO05D001632 2.6e-09 66.2 243 31.3
Sc03g0003140 Simmondsia chinensis HOM05D001749 ORTHO05D001632 2.6e-09 66.2 201 33.3
Atru.chr5.3055 Acer truncatum HOM05D001749 ORTHO05D001632 3.3e-09 65.9 218 30.3
A09p44040 Brassica napus HOM05D001749 ORTHO05D001632 3.3e-09 65.9 246 28.0
BraA09t39862Z Brassica rapa HOM05D001749 ORTHO05D001632 3.3e-09 65.9 246 28.0
ClCG07G008620 Citrullus lanatus HOM05D001749 ORTHO05D001632 3.3e-09 65.9 210 31.0
Sp5g11300 Schrenkiella parvula HOM05D001749 ORTHO05D001632 3.3e-09 65.9 248 29.0
BcaC07g39561 Brassica carinata HOM05D001749 ORTHO05D001632 5.7e-09 65.1 249 28.5
A03p48050 Brassica napus HOM05D001749 ORTHO05D001632 7.4e-09 64.7 244 27.0
BraA03t13912Z Brassica rapa HOM05D001749 ORTHO05D001632 7.4e-09 64.7 244 27.0
BcaB01g00565 Brassica carinata HOM05D001749 ORTHO05D001632 9.7e-09 64.3 240 30.8
CiPaw.01G045700 Carya illinoinensis HOM05D001749 ORTHO05D001632 9.7e-09 64.3 219 29.2
MELO3C016396.2 Cucumis melo HOM05D001749 ORTHO05D001632 9.7e-09 64.3 217 30.0
Dinv40015 Davidia involucrata HOM05D001749 ORTHO05D001632 9.7e-09 64.3 237 30.8
Prupe.7G158300 Prunus persica HOM05D001749 ORTHO05D001632 9.7e-09 64.3 246 28.9
Solyc02g084960.1 Solanum lycopersicum HOM05D001749 ORTHO05D001632 9.7e-09 64.3 241 28.6
BcaB02g10030 Brassica carinata HOM05D001749 ORTHO05D001632 1.3e-08 63.9 246 27.6
A09p10000 Brassica napus HOM05D001749 ORTHO05D001632 1.3e-08 63.9 234 30.3
Manes.11G085200 Manihot esculenta HOM05D001749 ORTHO05D001632 1.3e-08 63.9 223 30.0
PGSC0003DMG400003523 Solanum tuberosum HOM05D001749 ORTHO05D001632 1.3e-08 63.9 241 28.6
ClCG11G004240 Citrullus lanatus HOM05D001749 ORTHO05D001632 1.7e-08 63.5 226 30.5
CsaV3_2G014930 Cucumis sativus L. HOM05D001749 ORTHO05D001632 1.7e-08 63.5 223 28.3
BolC7t43068H Brassica oleracea HOM05D001749 ORTHO05D001632 2.2e-08 63.2 234 29.1
Gohir.D13G031200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 2.2e-08 63.2 224 30.4
BolC8t50232H Brassica oleracea HOM05D001749 ORTHO05D001632 2.8e-08 62.8 250 27.6
Glyma.11G115300 Glycine max HOM05D001749 ORTHO05D001632 2.8e-08 62.8 213 31.5
TWI79G0604 Tripterygium wilfordii HOM05D001749 ORTHO05D001632 2.8e-08 62.8 211 28.9
Sabra05G0099000 Salix brachista HOM05D001749 ORTHO05D001632 3.7e-08 62.4 244 27.9
Sc02g0005800 Simmondsia chinensis HOM05D001749 ORTHO05D001632 3.7e-08 62.4 215 30.7
VMungo0251G1135 Vigna mungo HOM05D001749 ORTHO05D001632 3.7e-08 62.4 209 28.7
CANSAT01G2116 Cannabis sativa HOM05D001749 ORTHO05D001632 4.8e-08 62.0 217 29.0
Carub.0008s2808 Capsella rubella HOM05D001749 ORTHO05D001632 4.8e-08 62.0 229 31.0
Thhalv10004766m.g Eutrema salsugineum HOM05D001749 ORTHO05D001632 4.8e-08 62.0 259 27.8
Gohir.A13G033300 Gossypium hirsutum HOM05D001749 ORTHO05D001632 4.8e-08 62.0 224 29.9
C07p46070 Brassica napus HOM05D001749 ORTHO05D001632 6.3e-08 61.6 243 29.2
BolC7t45123H Brassica oleracea HOM05D001749 ORTHO05D001632 6.3e-08 61.6 243 29.2
AT5G66440 Arabidopsis thaliana HOM05D001749 ORTHO05D001632 8.2e-08 61.2 242 28.9
BcaNung05716 Brassica carinata HOM05D001749 ORTHO05D001632 8.2e-08 61.2 237 28.7
Cfa005037 Carpinus fangiana HOM05D001749 ORTHO05D001632 8.2e-08 61.2 207 29.5
Hma1.2p1_0066F.1_g036220 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 8.2e-08 61.2 213 30.5
Sopen02g029630 Solanum pennellii HOM05D001749 ORTHO05D001632 8.2e-08 61.2 218 28.4
Migut.H02524 Erythranthe guttata HOM05D001749 ORTHO05D001632 1.1e-07 60.8 199 29.1
VMungo1309G2481 Vigna mungo HOM05D001749 ORTHO05D001632 1.1e-07 60.8 191 31.4
CsaV3_4G005530 Cucumis sativus L. HOM05D001749 ORTHO05D001632 1.4e-07 60.5 216 31.0
Thhalv10010637m.g Eutrema salsugineum HOM05D001749 ORTHO05D001632 1.4e-07 60.5 256 29.7
Sabra09G0091300 Salix brachista HOM05D001749 ORTHO05D001632 1.4e-07 60.5 215 30.7
Oeu023336.1 Olea europaea HOM05D001749 ORTHO05D001632 1.8e-07 60.1 239 28.5
Sed0004351 Sechium edule HOM05D001749 ORTHO05D001632 1.8e-07 60.1 200 29.5
Glyma.12G041200 Glycine max HOM05D001749 ORTHO05D001632 2.4e-07 59.7 214 29.0
Gorai.013G035600 Gossypium raimondii HOM05D001749 ORTHO05D001632 2.4e-07 59.7 224 29.5
Oeu061220.1 Olea europaea HOM05D001749 ORTHO05D001632 2.4e-07 59.7 181 31.5
Phvul.011G043200 Phaseolus vulgaris HOM05D001749 ORTHO05D001632 2.4e-07 59.7 208 30.3
Sc16g0002570 Simmondsia chinensis HOM05D001749 ORTHO05D001632 2.4e-07 59.7 178 32.0
Aqoxy5G01581 Aquilegia oxysepala HOM05D001749 ORTHO05D001632 3.1e-07 59.3 251 27.9
EL10As8g23912 Beta vulgaris HOM05D001749 ORTHO05D001632 3.1e-07 59.3 219 27.9
MD02G1143400 Malus domestica HOM05D001749 ORTHO05D001632 5.3e-07 58.5 232 27.2
arahy.Tifrunner.gnm1.ann1.T1P5QB Arachis hypogaea HOM05D001416 ORTHO05D030967 7.0e-07 58.2 143 39.9
Haze_02351 Corylus avellana HOM05D001749 ORTHO05D001632 7.0e-07 58.2 186 28.5
Haze_02352 Corylus avellana HOM05D001749 ORTHO05D001632 7.0e-07 58.2 186 28.5
PGR142G0388 Punica granatum HOM05D001749 ORTHO05D001632 7.0e-07 58.2 223 27.4
Aa31LG4G19030 Aethionema arabicum HOM05D001749 ORTHO05D001632 9.1e-07 57.8 255 27.8
TWI31G0051 Tripterygium wilfordii HOM05D001749 ORTHO05D001632 9.1e-07 57.8 214 27.6
Peaxi162Scf00010g00116 Petunia axillaris HOM05D001749 ORTHO05D001632 1.2e-06 57.4 182 33.0
Prupe.8G094100 Prunus persica HOM05D001749 ORTHO05D001632 1.2e-06 57.4 221 30.3
QL11p044367 Quercus lobata HOM05D001749 ORTHO05D001632 1.2e-06 57.4 194 27.3
Ah.03g141140 Amaranthus hybridus HOM05D001749 ORTHO05D001632 1.6e-06 57.0 216 27.8
MSTRG.5404 Avicennia marina HOM05D001749 ORTHO05D001632 1.6e-06 57.0 195 30.3
Cfa005035 Carpinus fangiana HOM05D001749 ORTHO05D001632 1.6e-06 57.0 193 27.5
Lj4C36T10 Lonicera japonica HOM05D001749 ORTHO05D001632 1.6e-06 57.0 233 27.0
Potri.009G119000 Populus trichocarpa HOM05D001749 ORTHO05D001632 1.6e-06 57.0 216 29.6
Ah.05g177040 Amaranthus hybridus HOM05D001749 ORTHO05D001632 2.0e-06 56.6 210 31.4
HanXRQChr09g0261391 Helianthus annuus HOM05D001749 ORTHO05D001632 2.0e-06 56.6 239 26.4
PGR119G0350 Punica granatum HOM05D001749 ORTHO05D001632 2.0e-06 56.6 226 30.5
Rhsim11G0179200 Rhododendron simsii HOM05D001749 ORTHO05D001632 2.0e-06 56.6 205 29.3
Duzib052G0040 Durio zibethinus HOM05D001749 ORTHO05D001632 2.6e-06 56.2 198 30.3
Sc15g0007080 Simmondsia chinensis HOM05D001749 ORTHO05D001632 2.6e-06 56.2 194 30.9
CiPaw.06G133900 Carya illinoinensis HOM05D001749 ORTHO05D001632 3.5e-06 55.8 215 28.8
COL.COLO4_25968 Corchorus olitorius HOM05D001749 ORTHO05D001632 3.5e-06 55.8 212 27.8
MELO3C023313.2 Cucumis melo HOM05D001749 ORTHO05D001632 3.5e-06 55.8 228 28.5
SGA_v2.0_scaffold58G20512 Striga asiatica HOM05D001749 ORTHO05D001632 3.5e-06 55.8 209 30.1
EL10Ac9g21701 Beta vulgaris HOM05D001749 ORTHO05D001632 4.5e-06 55.5 223 29.6
Potri.004G157300 Populus trichocarpa HOM05D001749 ORTHO05D001632 4.5e-06 55.5 223 29.1
Potri.005G120300 Populus trichocarpa HOM05D001749 ORTHO05D001632 4.5e-06 55.5 256 26.6
SalBow3G2565 Salvia bowleyana HOM05D001749 ORTHO05D001632 5.9e-06 55.1 163 32.5
TWI73G0715 Tripterygium wilfordii HOM05D001749 ORTHO05D001632 7.7e-06 54.7 224 26.3


User provided reference genes

Program Settings