Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 2.4e-63 245.4 123 100.0
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 9.9e-54 213.4 115 92.2
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 1.2e-46 189.9 115 80.9
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 4.5e-46 188.0 115 79.1
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 4.0e-39 164.9 118 68.6
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 1.3e-37 159.8 126 68.3
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 9.3e-36 153.7 123 65.0
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 2.7e-35 152.1 121 66.1
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 4.6e-35 151.4 125 64.8
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 6.0e-35 151.0 121 66.9
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 7.9e-35 150.6 125 64.8
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 3.0e-34 148.7 124 61.3
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 8.7e-34 147.1 127 62.2
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.1e-33 146.7 121 63.6
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 5.6e-33 144.4 126 64.3
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 1.6e-32 142.9 126 61.1
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 1.6e-32 142.9 122 63.9
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 2.1e-32 142.5 123 59.3
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 2.8e-32 142.1 123 62.6
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 2.8e-32 142.1 122 63.1
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 3.7e-32 141.7 124 63.7
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 4.8e-32 141.4 123 58.5
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 1.1e-31 140.2 122 63.1
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 1.4e-31 139.8 119 59.7
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.8e-31 139.4 121 62.0
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 1.2e-30 136.7 122 59.8
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 1.5e-30 136.3 126 58.7
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 1.1e-28 130.2 124 59.7
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 9.3e-28 127.1 108 61.1
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 1.5e-25 119.8 115 58.3
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 4.3e-25 118.2 100 62.0
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 3.2e-20 102.1 130 48.5
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 3.2e-20 102.1 130 46.2
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 7.2e-20 100.9 128 46.1
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.6e-19 99.8 133 45.1
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.6e-19 99.8 133 45.1
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 1.6e-19 99.8 117 52.1
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 4.6e-19 98.2 120 48.3
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 4.6e-19 98.2 133 45.1
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 4.6e-19 98.2 130 47.7
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 7.9e-19 97.4 120 46.7
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 7.9e-19 97.4 115 50.4
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 1.0e-18 97.1 129 48.8
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.4e-18 96.7 125 48.8
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 1.4e-18 96.7 128 47.7
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.3e-18 95.9 128 47.7
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 3.0e-18 95.5 117 45.3
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 5.1e-18 94.7 126 45.2
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 5.1e-18 94.7 121 44.6
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 6.7e-18 94.4 118 46.6
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 8.8e-18 94.0 129 48.8
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 5.7e-17 91.3 121 47.1
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 9.7e-17 90.5 118 46.6
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 1.3e-16 90.1 127 46.5
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.3e-16 90.1 127 45.7
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 2.8e-16 89.0 135 42.2
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.7e-16 88.6 130 45.4
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 4.8e-16 88.2 128 46.9
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 4.8e-16 88.2 128 46.9
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 4.8e-16 88.2 128 46.9
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 8.2e-16 87.4 129 45.0
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 1.8e-15 86.3 121 43.8
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 4.1e-15 85.1 129 45.0
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 4.1e-15 85.1 128 44.5
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 4.1e-15 85.1 128 44.5
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 4.1e-15 85.1 113 42.5
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 5.3e-15 84.7 125 46.4
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 6.9e-15 84.3 130 44.6
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 6.9e-15 84.3 124 42.7
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 9.1e-15 84.0 123 44.7
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 4.5e-14 81.6 122 43.4
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 5.9e-14 81.3 124 41.9
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 7.7e-14 80.9 122 44.3
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 7.7e-14 80.9 129 41.1
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 1.0e-13 80.5 122 45.9
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 1.0e-13 80.5 122 45.9
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 1.0e-13 80.5 122 43.4
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.3e-13 80.1 124 44.4
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.3e-13 80.1 124 44.4
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 1.3e-13 80.1 122 42.6
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 1.7e-13 79.7 129 43.4
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.7e-13 79.7 123 43.9
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.2e-13 79.3 124 43.5
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.2e-13 79.3 124 43.5
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 2.9e-13 79.0 119 42.9
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 2.9e-13 79.0 124 43.5
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 2.9e-13 79.0 119 42.9
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 2.9e-13 79.0 119 42.9
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 2.9e-13 79.0 124 43.5
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 2.9e-13 79.0 127 41.7
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 3.8e-13 78.6 122 44.3
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 3.8e-13 78.6 129 41.9
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 3.8e-13 78.6 122 44.3
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 5.0e-13 78.2 131 42.0
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 6.5e-13 77.8 124 42.7
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 6.5e-13 77.8 124 42.7
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 1.1e-12 77.0 124 42.7
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 1.1e-12 77.0 124 42.7
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 1.4e-12 76.6 128 42.2
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.4e-12 76.6 124 42.7
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.4e-12 76.6 124 42.7
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.5e-12 75.9 118 43.2
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 3.2e-12 75.5 125 42.4
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 3.2e-12 75.5 124 41.9
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 3.2e-12 75.5 125 42.4
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 3.2e-12 75.5 124 41.9
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 3.2e-12 75.5 139 36.7
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 4.2e-12 75.1 125 43.2
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 4.2e-12 75.1 123 39.8
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 4.2e-12 75.1 138 40.6
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 5.5e-12 74.7 125 43.2
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 5.5e-12 74.7 125 43.2
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 5.5e-12 74.7 125 43.2
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 5.5e-12 74.7 125 43.2
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 5.5e-12 74.7 125 43.2
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 7.2e-12 74.3 121 42.1
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 7.2e-12 74.3 125 43.2
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 9.4e-12 73.9 134 36.6
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 9.4e-12 73.9 125 43.2
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 9.4e-12 73.9 107 44.9
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-11 73.6 125 43.2
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 1.2e-11 73.6 127 39.4
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 1.2e-11 73.6 127 39.4
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.6e-11 73.2 122 40.2
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 1.6e-11 73.2 94 43.6
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.6e-11 73.2 108 42.6
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.6e-11 73.2 125 41.6
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.1e-11 72.8 124 41.9
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 2.1e-11 72.8 152 36.2
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 2.1e-11 72.8 121 41.3
Medtr7g026910 Medicago truncatula HOM05D003805 ORTHO05D004300 2.1e-11 72.8 82 54.9
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 2.7e-11 72.4 121 41.3
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 2.7e-11 72.4 120 40.8
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 3.6e-11 72.0 124 39.5
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 3.6e-11 72.0 121 41.3
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 3.6e-11 72.0 107 44.9
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 4.7e-11 71.6 119 40.3
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 4.7e-11 71.6 127 39.4
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 4.7e-11 71.6 122 37.7
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 6.1e-11 71.2 110 41.8
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 1.4e-10 70.1 125 40.8
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 1.8e-10 69.7 108 40.7
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 2.3e-10 69.3 112 36.6
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 2.3e-10 69.3 108 41.7
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.0e-10 68.9 105 41.0
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 3.9e-10 68.6 49 61.2
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 5.1e-10 68.2 108 40.7
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 5.1e-10 68.2 119 38.7
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 8.8e-10 67.4 110 39.1
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.1e-09 67.0 126 36.5
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.1e-09 67.0 140 37.1
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.5e-09 66.6 117 38.5
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 2.6e-09 65.9 109 42.2
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 2.6e-09 65.9 113 37.2
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 5.7e-09 64.7 110 36.4
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 7.4e-09 64.3 107 39.3
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 9.7e-09 63.9 111 42.3
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 9.7e-09 63.9 111 42.3
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 9.7e-09 63.9 111 42.3
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 1.3e-08 63.5 122 34.4
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 1.3e-08 63.5 107 40.2
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 2.8e-08 62.4 105 44.8
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.8e-08 62.4 110 34.5
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 2.8e-08 62.4 121 35.5
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 3.7e-08 62.0 112 35.7
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 4.8e-08 61.6 119 37.0
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 6.3e-08 61.2 101 42.6
BcaC06g33329 Brassica carinata HOM05D003805 ORTHO05D004300 8.2e-08 60.8 143 34.3
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 8.2e-08 60.8 47 55.3
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 8.2e-08 60.8 77 39.0
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 1.4e-07 60.1 37 64.9
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 1.4e-07 60.1 106 39.6
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 1.8e-07 59.7 105 38.1
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 3.1e-07 58.9 83 39.8
BcaC06g33330 Brassica carinata HOM05D003805 ORTHO05D004300 3.1e-07 58.9 161 33.5
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 3.1e-07 58.9 89 37.1
ATR0568G115 Amborella trichopoda HOM05D003805 ORTHO05D004300 4.1e-07 58.5 120 31.7
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 4.1e-07 58.5 110 33.6
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 4.1e-07 58.5 107 33.6
ATR0568G162 Amborella trichopoda HOM05D003805 ORTHO05D004300 1.5e-06 56.6 100 31.0
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 2.0e-06 56.2 124 36.3
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 2.0e-06 56.2 51 54.9
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.6e-06 55.8 57 45.6


User provided reference genes

Program Settings