Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G027800 Phaseolus vulgaris HOM05D006755 ORTHO05D008472 1.1e-206 723.4 452 100.0
VMungo1215G0649 Vigna mungo HOM05D006755 ORTHO05D008472 3.0e-140 502.7 392 88.8
Glyma.01G176900 Glycine max HOM05D006755 ORTHO05D008472 8.2e-138 494.6 441 80.3
Glyma.11G065700 Glycine max HOM05D006755 ORTHO05D008472 1.3e-122 444.1 397 81.1
Psat2g160920 Pisum sativum HOM05D006755 ORTHO05D008472 2.2e-90 337.0 380 74.2
TPR.G18806 Trifolium pratense HOM05D006755 ORTHO05D008472 1.3e-87 327.8 382 71.5
arahy.Tifrunner.gnm1.ann1.0IBU2N Arachis hypogaea HOM05D006755 ORTHO05D008472 1.1e-86 324.7 382 71.5
arahy.Tifrunner.gnm1.ann1.HWJ5MG Arachis hypogaea HOM05D006755 ORTHO05D008472 5.6e-86 322.4 380 71.3
Lalb_Chr09g0322551 Lupinus albus HOM05D006755 ORTHO05D008472 2.3e-84 317.0 392 66.6
Ca_00389_v3 Cicer arietinum L. HOM05D006755 ORTHO05D008472 3.4e-83 313.2 394 68.3
Lj2g0006557 Lotus japonicus HOM05D006755 ORTHO05D008472 2.4e-81 307.0 397 68.3
Medtr5g019860 Medicago truncatula HOM05D006755 ORTHO05D008472 1.6e-77 294.3 410 64.6
Medtr8g098445 Medicago truncatula HOM05D006755 ORTHO05D008472 1.1e-76 291.6 433 61.7
Lj2g0026453 Lotus japonicus HOM05D006755 ORTHO05D008472 3.2e-57 226.9 398 63.6
Thecc.02G149300 Theobroma cacao HOM05D006755 ORTHO05D008472 1.7e-42 177.9 312 64.7
Duzib052G1107 Durio zibethinus HOM05D006755 ORTHO05D008472 8.4e-42 175.6 312 63.5
Gorai.013G065500 Gossypium raimondii HOM05D006755 ORTHO05D008472 2.7e-40 170.6 323 61.0
Gohir.D13G058100 Gossypium hirsutum HOM05D006755 ORTHO05D008472 2.3e-39 167.5 323 60.7
Rhsim12G0052500 Rhododendron simsii HOM05D006755 ORTHO05D008472 5.1e-39 166.4 374 55.1
Gohir.A13G063800 Gossypium hirsutum HOM05D006755 ORTHO05D008472 1.1e-38 165.2 323 48.9
CANSAT25G1067 Cannabis sativa HOM05D006755 ORTHO05D008472 1.5e-38 164.9 349 59.6
Hma1.2p1_0052F.1_g030470 Hydrangea macrophylla HOM05D006755 ORTHO05D008472 1.5e-38 164.9 353 58.6
COL.COLO4_04807 Corchorus olitorius HOM05D006755 ORTHO05D008472 2.5e-38 164.1 332 57.5
CANSAT25G1651 Cannabis sativa HOM05D006755 ORTHO05D008472 7.4e-38 162.5 347 59.1
Duzib132G0679 Durio zibethinus HOM05D006755 ORTHO05D008472 1.3e-37 161.8 337 58.8
Migut.E01827 Erythranthe guttata HOM05D006755 ORTHO05D008472 2.1e-37 161.0 248 69.4
CSS0044736 Camellia sinensis var. sinensis HOM05D006755 ORTHO05D008472 1.8e-36 157.9 235 75.3
Eucgr.I01549 Eucalyptus grandis HOM05D006755 ORTHO05D008472 4.0e-36 156.8 241 72.6
PGR142G2394 Punica granatum HOM05D006755 ORTHO05D008472 9.0e-36 155.6 237 72.2
Cc08_g09000 Coffea canephora HOM05D006755 ORTHO05D008472 1.2e-35 155.2 348 49.1
Oeu033356.1 Olea europaea HOM05D006755 ORTHO05D008472 1.5e-35 154.8 284 61.3
TAR376G0479 Trochodendron aralioides HOM05D006755 ORTHO05D008472 2.0e-35 154.5 354 57.9
Dinv41852 Davidia involucrata HOM05D006755 ORTHO05D008472 1.7e-34 151.4 319 60.8
Solyc12g096140.3 Solanum lycopersicum HOM05D006755 ORTHO05D008472 2.9e-34 150.6 334 57.8
MSTRG.1737 Avicennia marina HOM05D006755 ORTHO05D008472 3.8e-34 150.2 256 66.4
ECA233G3571 Erigeron canadensis HOM05D006755 ORTHO05D008472 3.8e-34 150.2 286 58.4
Nitab4.5_0002859g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 3.8e-34 150.2 303 61.4
Nn6g31560 Nelumbo nucifera HOM05D006755 ORTHO05D008472 4.9e-34 149.8 419 48.2
Sopen12g032020 Solanum pennellii HOM05D006755 ORTHO05D008472 8.4e-34 149.1 325 57.5
Nitab4.5_0009982g0010 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.1e-33 148.7 304 62.5
CDE02G4616 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 1.4e-33 148.3 227 74.4
Os01g0546500 Oryza sativa ssp. japonica HOM05D006755 ORTHO05D008472 1.4e-33 148.3 233 70.8
Carub.0007s0004 Capsella rubella HOM05D006755 ORTHO05D008472 1.9e-33 147.9 261 64.4
QL11p057006 Quercus lobata HOM05D006755 ORTHO05D008472 1.9e-33 147.9 244 63.9
Nitab4.5_0000943g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 2.5e-33 147.5 301 62.5
Actinidia26119 Actinidia chinensis HOM05D006755 ORTHO05D008472 3.2e-33 147.1 189 83.1
CAN.G947.37 Capsicum annuum HOM05D006755 ORTHO05D008472 3.2e-33 147.1 314 58.9
AL7G10050 Arabidopsis lyrata HOM05D006755 ORTHO05D008472 4.2e-33 146.7 311 55.9
Ciclev10028759m.g Citrus clementina HOM05D006755 ORTHO05D008472 4.2e-33 146.7 322 59.3
Peaxi162Scf00876g00046 Petunia axillaris HOM05D006755 ORTHO05D008472 4.2e-33 146.7 325 57.5
Manes.15G113000 Manihot esculenta HOM05D006755 ORTHO05D008472 9.3e-33 145.6 356 53.1
BraA06t27405Z Brassica rapa HOM05D006755 ORTHO05D008472 2.1e-32 144.4 236 71.2
PGSC0003DMG400029290 Solanum tuberosum HOM05D006755 ORTHO05D008472 2.1e-32 144.4 333 57.1
HanXRQChr07g0186241 Helianthus annuus HOM05D006755 ORTHO05D008472 2.7e-32 144.1 353 50.7
TWI75G0077 Tripterygium wilfordii HOM05D006755 ORTHO05D008472 2.7e-32 144.1 314 58.0
A06p45360 Brassica napus HOM05D006755 ORTHO05D008472 7.9e-32 142.5 236 70.8
DCAR_025005 Daucus carota HOM05D006755 ORTHO05D008472 7.9e-32 142.5 351 54.7
Sabra04G0141300 Salix brachista HOM05D006755 ORTHO05D008472 7.9e-32 142.5 239 71.1
Aa31LG6G16930 Aethionema arabicum HOM05D006755 ORTHO05D008472 1.0e-31 142.1 316 53.2
Aqoxy4G02640 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 1.8e-31 141.4 242 69.0
CARHR293910 Cardamine hirsuta HOM05D006755 ORTHO05D008472 1.8e-31 141.4 234 69.7
HPP92_025325 Vanilla planifolia HOM05D006755 ORTHO05D008472 1.8e-31 141.4 210 77.1
Zm00001eb342190 Zea mays HOM05D006755 ORTHO05D008472 1.8e-31 141.4 233 67.4
PSO541G3341 Papaver somniferum HOM05D006755 ORTHO05D008472 2.3e-31 141.0 312 44.9
Peaxi162Scf00193g00005 Petunia axillaris HOM05D006755 ORTHO05D008472 2.3e-31 141.0 287 59.2
BolC7t43606H Brassica oleracea HOM05D006755 ORTHO05D008472 3.0e-31 140.6 313 55.9
BcaC06g31423 Brassica carinata HOM05D006755 ORTHO05D008472 3.9e-31 140.2 310 53.9
HPP92_007220 Vanilla planifolia HOM05D006755 ORTHO05D008472 3.9e-31 140.2 371 53.4
CsaV3_7G002250 Cucumis sativus L. HOM05D006755 ORTHO05D008472 5.1e-31 139.8 297 57.6
EL10Ac9g21570 Beta vulgaris HOM05D006755 ORTHO05D008472 8.7e-31 139.0 223 74.0
CDE04G3036 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 8.7e-31 139.0 349 53.9
Thhalv10005467m.g Eutrema salsugineum HOM05D006755 ORTHO05D008472 8.7e-31 139.0 252 66.7
MELO3C024165.2 Cucumis melo HOM05D006755 ORTHO05D008472 1.5e-30 138.3 309 57.9
Sp7g37600 Schrenkiella parvula HOM05D006755 ORTHO05D008472 1.5e-30 138.3 330 53.9
Sc18g0006850 Simmondsia chinensis HOM05D006755 ORTHO05D008472 1.5e-30 138.3 335 57.3
SGA_v2.0_scaffold21G09644 Striga asiatica HOM05D006755 ORTHO05D008472 1.5e-30 138.3 241 68.9
BcaC06g34295 Brassica carinata HOM05D006755 ORTHO05D008472 4.3e-30 136.7 236 68.2
CiPaw.06G113100 Carya illinoinensis HOM05D006755 ORTHO05D008472 4.3e-30 136.7 237 65.0
Lsat_1_v5_gn_6_28960 Lactuca sativa HOM05D006755 ORTHO05D008472 4.3e-30 136.7 235 69.8
PSO675G0405 Papaver somniferum HOM05D006755 ORTHO05D008472 4.3e-30 136.7 270 47.4
Nitab4.5_0001968g0030 Nicotiana tabacum HOM05D006755 ORTHO05D008472 5.7e-30 136.3 222 73.0
THA.LOC104823440 Tarenaya hassleriana HOM05D006755 ORTHO05D008472 5.7e-30 136.3 234 67.9
Prupe.8G183200 Prunus persica HOM05D006755 ORTHO05D008472 7.4e-30 136.0 320 57.8
Ah.01g010520 Amaranthus hybridus HOM05D006755 ORTHO05D008472 9.6e-30 135.6 236 69.9
Lj9P409T68 Lonicera japonica HOM05D006755 ORTHO05D008472 9.6e-30 135.6 311 60.5
Cfa005407 Carpinus fangiana HOM05D006755 ORTHO05D008472 1.3e-29 135.2 323 53.6
Aqoxy6G03058 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 2.8e-29 134.0 243 68.7
SHI05798 Sapria himalayana HOM05D006755 ORTHO05D008472 2.8e-29 134.0 196 75.0
Sed0010179 Sechium edule HOM05D006755 ORTHO05D008472 1.8e-28 131.3 294 58.8
vmacro08131 Vaccinium macrocarpon HOM05D006755 ORTHO05D008472 1.8e-28 131.3 187 80.7
Potri.004G209500 Populus trichocarpa HOM05D006755 ORTHO05D008472 2.4e-28 131.0 333 55.9
AUR62010217 Chenopodium quinoa HOM05D006755 ORTHO05D008472 3.1e-28 130.6 237 68.4
C07p30650 Brassica napus HOM05D006755 ORTHO05D008472 4.0e-28 130.2 313 55.0
AUR62013213 Chenopodium quinoa HOM05D006755 ORTHO05D008472 3.2e-25 120.6 291 57.4
MD05G1145100 Malus domestica HOM05D006755 ORTHO05D008472 5.5e-25 119.8 310 57.1
MBI01_g31986_MAGBIO Magnolia biondii HOM05D006755 ORTHO05D008472 1.6e-24 118.2 239 66.9
AT4G38150 Arabidopsis thaliana HOM05D006755 ORTHO05D008472 2.7e-24 117.5 200 43.0
Nn3g19301 Nelumbo nucifera HOM05D006755 ORTHO05D008472 3.0e-23 114.0 102 60.8
GSVIVG01023844001 Vitis vinifera HOM05D006755 ORTHO05D008472 3.0e-23 114.0 302 32.1
Nn1g06229 Nelumbo nucifera HOM05D006755 ORTHO05D008472 9.7e-22 109.0 103 59.2
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 1.3e-21 108.6 273 57.5
Actinidia20592 Actinidia chinensis HOM05D006755 ORTHO05D008472 4.8e-21 106.7 58 87.9
Ah.01g017780 Amaranthus hybridus HOM05D006755 ORTHO05D008472 4.8e-21 106.7 233 62.7
RcHm_v2.0_Chr6g0281671 Rosa chinensis HOM05D006755 ORTHO05D008472 8.2e-21 105.9 350 50.0
Haze_01948 Corylus avellana HOM05D006755 ORTHO05D008472 1.8e-20 104.8 194 41.2
ATR0605G371 Amborella trichopoda HOM05D006755 ORTHO05D008472 3.1e-20 104.0 109 57.8
SalBow1G4250 Salvia bowleyana HOM05D006755 ORTHO05D008472 4.1e-20 103.6 233 48.1
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 4.5e-19 100.1 104 55.8
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 1.3e-18 98.6 156 38.5
SEGI_20822 Sequoiadendron giganteum HOM05D006755 ORTHO05D008472 1.7e-18 98.2 217 66.8
FvH4_2g17180 Fragaria vesca HOM05D006755 ORTHO05D008472 2.5e-17 94.4 326 50.3
FAN15G2937 Fragaria x ananassa HOM05D006755 ORTHO05D008472 1.2e-16 92.0 329 51.1
Nn6g31556 Nelumbo nucifera HOM05D006755 ORTHO05D008472 4.6e-16 90.1 172 53.5
FAN27G0618 Fragaria x ananassa HOM05D006755 ORTHO05D008472 1.0e-15 89.0 328 50.6
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 5.3e-12 76.6 60 56.7
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 1.5e-11 75.1 60 55.0
Lj6P318T4 Lonicera japonica HOM05D006755 ORTHO05D008472 2.6e-11 74.3 38 92.1
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 3.4e-11 73.9 60 55.0
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.0e-10 70.1 60 55.0
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 8.5e-10 69.3 114 43.0
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 3.2e-09 67.4 92 42.4
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 4.2e-09 67.0 60 48.3
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 5.5e-09 66.6 60 48.3
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 5.5e-09 66.6 60 51.7
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 9.4e-09 65.9 61 50.8
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 1.6e-08 65.1 60 50.0
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.6e-08 65.1 60 50.0
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 2.1e-08 64.7 65 49.2
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 2.1e-08 64.7 60 48.3
Oeu053880.1 Olea europaea HOM05D043847 ORTHO05D008472 1.4e-07 62.0 46 65.2
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 1.4e-07 62.0 94 40.4
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 1.8e-07 61.6 92 41.3
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 3.0e-07 60.8 60 46.7
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 3.9e-07 60.5 99 39.4
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 5.1e-07 60.1 50 50.0
Nn5g27110 Nelumbo nucifera HOM05D006755 ORTHO05D008472 6.7e-07 59.7 146 71.2
MD05G1145400 Malus domestica HOM05D006755 ORTHO05D008472 8.8e-07 59.3 37 75.7
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 1.1e-06 58.9 61 47.5
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 1.1e-06 58.9 61 47.5
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 1.5e-06 58.5 84 40.5
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 2.0e-06 58.2 107 32.7
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 2.0e-06 58.2 100 39.0
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 4.4e-06 57.0 61 44.3
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 4.4e-06 57.0 61 44.3
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 5.7e-06 56.6 85 38.8
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 9.7e-06 55.8 130 30.0


User provided reference genes

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