Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G025400 Phaseolus vulgaris HOM05D006999 ORTHO05D008936 0.0e+00 1164.1 661 100.0
VMungo1215G1670 Vigna mungo HOM05D006999 ORTHO05D008936 0.0e+00 1088.6 661 92.9
Glyma.11G063000 Glycine max HOM05D006999 ORTHO05D008936 2.9e-261 905.2 659 81.2
Lj2g0003627 Lotus japonicus HOM05D006999 ORTHO05D008936 7.5e-249 864.0 659 68.1
Ca_24822_v3 Cicer arietinum L. HOM05D006999 ORTHO05D008936 3.4e-241 838.6 668 66.6
arahy.Tifrunner.gnm1.ann1.ZB5P2M Arachis hypogaea HOM05D006999 ORTHO05D008936 5.4e-239 831.2 656 70.1
Medtr5g019030 Medicago truncatula HOM05D006999 ORTHO05D008936 1.2e-230 803.5 641 71.9
TPR.G34465 Trifolium pratense HOM05D006999 ORTHO05D008936 4.1e-223 778.5 660 64.4
QL06p044626 Quercus lobata HOM05D006999 ORTHO05D008936 4.3e-220 768.5 661 61.3
Lalb_Chr09g0322731 Lupinus albus HOM05D006999 ORTHO05D008936 4.7e-219 765.0 663 65.3
RcHm_v2.0_Chr2g0102951 Rosa chinensis HOM05D006999 ORTHO05D008936 8.7e-213 744.2 657 61.2
CANSAT01G1763 Cannabis sativa HOM05D006999 ORTHO05D008936 1.1e-212 743.8 657 59.7
CiPaw.01G031400 Carya illinoinensis HOM05D006999 ORTHO05D008936 2.1e-211 739.6 663 60.9
Prupe.7G147200 Prunus persica HOM05D006999 ORTHO05D008936 4.0e-210 735.3 658 67.2
Psat2g162640 Pisum sativum HOM05D006999 ORTHO05D008936 2.1e-206 723.0 647 66.9
FAN23G0790 Fragaria x ananassa HOM05D006999 ORTHO05D008936 2.5e-204 716.1 629 66.3
Cfa004253 Carpinus fangiana HOM05D006999 ORTHO05D008936 9.0e-202 707.6 651 60.4
Manes.13G134700 Manihot esculenta HOM05D006999 ORTHO05D008936 2.9e-200 702.6 651 56.5
MD15G1270900 Malus domestica HOM05D006999 ORTHO05D008936 8.4e-200 701.0 641 59.8
Thecc.01G043300 Theobroma cacao HOM05D006999 ORTHO05D008936 9.3e-199 697.6 658 56.7
Cpa.g.sc15.132 Carica papaya HOM05D006999 ORTHO05D008936 8.7e-197 691.0 658 56.1
FvH4_2g07140 Fragaria vesca HOM05D006999 ORTHO05D008936 1.1e-196 690.6 628 58.4
Potri.005G128600 Populus trichocarpa HOM05D006999 ORTHO05D008936 6.9e-194 681.4 633 58.8
Sabra05G0104700 Salix brachista HOM05D006999 ORTHO05D008936 1.7e-192 676.8 639 56.3
Duzib147G0594 Durio zibethinus HOM05D006999 ORTHO05D008936 2.2e-192 676.4 656 56.9
Gohir.D12G067100 Gossypium hirsutum HOM05D006999 ORTHO05D008936 1.4e-191 673.7 646 55.7
Gorai.008G070500 Gossypium raimondii HOM05D006999 ORTHO05D008936 1.2e-190 670.6 645 55.7
GSVIVG01019040001 Vitis vinifera HOM05D006999 ORTHO05D008936 3.5e-190 669.1 659 53.9
Gohir.A12G066700 Gossypium hirsutum HOM05D006999 ORTHO05D008936 1.0e-189 667.5 646 56.0
TWI73G1021 Tripterygium wilfordii HOM05D006999 ORTHO05D008936 2.3e-181 639.8 641 58.5
THA.LOC104826827 Tarenaya hassleriana HOM05D006999 ORTHO05D008936 3.7e-179 632.5 655 52.2
Aa31LG1G15180 Aethionema arabicum HOM05D006999 ORTHO05D008936 6.3e-179 631.7 661 52.3
Dinv39939 Davidia involucrata HOM05D006999 ORTHO05D008936 8.5e-176 621.3 660 52.0
MSTRG.15411 Avicennia marina HOM05D006999 ORTHO05D008936 1.1e-175 620.9 625 52.5
Migut.K00852 Erythranthe guttata HOM05D006999 ORTHO05D008936 2.5e-175 619.8 629 51.7
AT5G66631 Arabidopsis thaliana HOM05D006999 ORTHO05D008936 4.2e-175 619.0 636 52.7
CARHR281110 Cardamine hirsuta HOM05D006999 ORTHO05D008936 3.6e-174 615.9 634 52.1
Dinv29387 Davidia involucrata HOM05D006999 ORTHO05D008936 2.5e-172 609.8 638 53.8
Oeu049321.1 Olea europaea HOM05D006999 ORTHO05D008936 2.5e-172 609.8 660 50.3
PGSC0003DMG400001186 Solanum tuberosum HOM05D006999 ORTHO05D008936 7.4e-172 608.2 627 59.0
Cc05_g07730 Coffea canephora HOM05D006999 ORTHO05D008936 9.7e-172 607.8 650 50.9
Thhalv10005592m.g Eutrema salsugineum HOM05D006999 ORTHO05D008936 1.3e-171 607.4 659 51.0
Solyc02g065510.1 Solanum lycopersicum HOM05D006999 ORTHO05D008936 8.2e-171 604.7 627 58.9
Sopen02g015710 Solanum pennellii HOM05D006999 ORTHO05D008936 1.8e-170 603.6 627 58.4
CSS0003698 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 6.9e-170 601.7 658 51.1
Oeu049309.1 Olea europaea HOM05D006999 ORTHO05D008936 9.1e-170 601.3 660 49.5
CSS0009159 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 1.2e-169 600.9 658 51.1
Sp2g30070 Schrenkiella parvula HOM05D006999 ORTHO05D008936 1.2e-169 600.9 638 50.9
Aqoxy6G01000 Aquilegia oxysepala HOM05D006999 ORTHO05D008936 6.5e-168 595.1 631 53.2
BcaB02g10006 Brassica carinata HOM05D006999 ORTHO05D008936 1.4e-167 594.0 655 51.3
AL8G44870 Arabidopsis lyrata HOM05D006999 ORTHO05D008936 7.2e-167 591.7 637 50.7
A07p17310 Brassica napus HOM05D006999 ORTHO05D008936 9.4e-167 591.3 644 50.9
BolC7t43049H Brassica oleracea HOM05D006999 ORTHO05D008936 4.7e-166 589.0 643 51.5
BraA07t29457Z Brassica rapa HOM05D006999 ORTHO05D008936 1.0e-165 587.8 636 51.1
Eucgr.I02485 Eucalyptus grandis HOM05D006999 ORTHO05D008936 1.0e-165 587.8 657 49.5
Haze_15147 Corylus avellana HOM05D000909 ORTHO05D000928 1.4e-165 587.4 659 52.2
Sc03g0001020 Simmondsia chinensis HOM05D006999 ORTHO05D008936 2.3e-165 586.6 663 56.0
BcaC06g34726 Brassica carinata HOM05D006999 ORTHO05D008936 4.4e-164 582.4 654 50.0
SalBow1G0035 Salvia bowleyana HOM05D006999 ORTHO05D008936 9.7e-164 581.3 628 49.8
PSO541G6186 Papaver somniferum HOM05D006999 ORTHO05D008936 1.7e-163 580.5 649 48.7
DCAR_026261 Daucus carota HOM05D006999 ORTHO05D008936 6.3e-163 578.6 641 49.8
SGA_v2.0_scaffold62G21537 Striga asiatica HOM05D006999 ORTHO05D008936 4.7e-158 562.4 641 47.4
Nitab4.5_0000090g0200 Nicotiana tabacum HOM05D006999 ORTHO05D008936 6.1e-158 562.0 659 55.2
Nitab4.5_0004292g0030 Nicotiana tabacum HOM05D006999 ORTHO05D008936 1.4e-157 560.8 646 56.0
FvH4_1g14280 Fragaria vesca HOM05D006999 ORTHO05D008936 1.5e-156 557.4 511 56.8
TAR381G1039 Trochodendron aralioides HOM05D006999 ORTHO05D008936 4.4e-156 555.8 665 54.7
vmacro00136 Vaccinium macrocarpon HOM05D006999 ORTHO05D008936 1.8e-154 550.4 658 54.1
RcHm_v2.0_Chr2g0102871 Rosa chinensis HOM05D006999 ORTHO05D008936 2.7e-153 546.6 520 58.5
Nn5g29479 Nelumbo nucifera HOM05D006999 ORTHO05D008936 7.7e-153 545.0 664 47.3
AUR62008030 Chenopodium quinoa HOM05D006999 ORTHO05D008936 8.5e-152 541.6 661 52.8
CAN.G93.18 Capsicum annuum HOM05D006999 ORTHO05D008936 9.4e-151 538.1 659 53.4
ECA232G3871 Erigeron canadensis HOM05D006999 ORTHO05D008936 8.0e-150 535.0 623 53.8
Atru.chr3.494 Acer truncatum HOM05D006999 ORTHO05D008936 1.2e-148 531.2 501 55.5
Ah.02g126330 Amaranthus hybridus HOM05D006999 ORTHO05D008936 1.2e-148 531.2 639 52.3
Lj4P134T41 Lonicera japonica HOM05D006999 ORTHO05D008936 1.7e-147 527.3 514 53.7
Rhsim02G0229300 Rhododendron simsii HOM05D006999 ORTHO05D008936 2.2e-147 526.9 659 51.3
Ciclev10027580m.g Citrus clementina HOM05D006999 ORTHO05D008936 6.3e-147 525.4 639 53.8
Rhsim02G0225000 Rhododendron simsii HOM05D006999 ORTHO05D008936 2.7e-145 520.0 557 50.1
Peaxi162Scf00019g00154 Petunia axillaris HOM05D006999 ORTHO05D008936 5.9e-145 518.8 627 48.6
Oeu049317.1 Olea europaea HOM05D006999 ORTHO05D008936 1.5e-143 514.2 562 50.2
Carub.0008s2788 Capsella rubella HOM05D006999 ORTHO05D008936 4.0e-141 506.1 516 52.3
C07p25190 Brassica napus HOM05D006999 ORTHO05D008936 2.8e-139 500.0 539 49.9
MBI16_g10978_MAGBIO Magnolia biondii HOM05D006999 ORTHO05D003554 1.1e-130 471.5 633 50.4
EL10Ac6g14872 Beta vulgaris HOM05D006999 ORTHO05D008936 1.8e-130 470.7 658 47.1
HPP92_025826 Vanilla planifolia HOM05D006999 ORTHO05D008936 1.8e-130 470.7 634 44.6
Actinidia36538 Actinidia chinensis HOM05D006999 ORTHO05D008936 1.2e-124 451.4 663 44.5
HanXRQChr09g0265111 Helianthus annuus HOM05D006999 ORTHO05D008936 1.3e-123 448.0 623 42.5
ATR0782G111 Amborella trichopoda HOM05D006999 ORTHO05D008936 1.6e-113 414.5 678 40.0
Glyma.01G179251 Glycine max HOM05D006999 ORTHO05D008936 1.3e-112 411.4 273 80.2
CDE01G0819 Ceratophyllum demersum HOM05D006999 ORTHO05D008936 3.3e-111 406.8 642 39.7
Hma1.2p1_2980F.1_g331210 Hydrangea macrophylla HOM05D006999 ORTHO05D008936 1.7e-107 394.4 544 43.0
Dinv18613 Davidia involucrata HOM05D006999 ORTHO05D008936 1.9e-103 380.9 633 38.2
Dinv26229 Davidia involucrata HOM05D006999 ORTHO05D008936 1.9e-103 380.9 633 38.2
Os01g0167750 Oryza sativa ssp. japonica HOM05D006999 ORTHO05D008936 1.8e-101 374.4 634 38.8
Haze_25752 Corylus avellana HOM05D006999 ORTHO05D008936 1.5e-92 344.7 646 37.3
SEGI_35610 Sequoiadendron giganteum HOM05D006999 ORTHO05D008936 2.4e-90 337.4 665 33.4
Cfa021547 Carpinus fangiana HOM05D006999 ORTHO05D008936 2.1e-89 334.3 656 38.1
unitig_748.g8403 Utricularia gibba HOM05D006999 ORTHO05D008936 2.1e-89 334.3 383 46.2
Zm00001eb123240 Zea mays HOM05D006999 ORTHO05D008936 2.1e-89 334.3 620 36.8
Glyma.01G179201 Glycine max HOM05D006999 ORTHO05D008936 2.4e-77 294.3 228 91.2
Cfa003411 Carpinus fangiana HOM05D006999 ORTHO05D008936 8.5e-59 232.6 616 30.8
FAN28G3023 Fragaria x ananassa HOM05D006999 ORTHO05D008936 1.1e-47 195.7 178 51.7
unitig_748.g8404 Utricularia gibba HOM05D006999 ORTHO05D008936 1.1e-45 189.1 233 45.9
COL.COLO4_22153 Corchorus olitorius HOM05D000225 ORTHO05D003554 5.2e-40 170.2 244 45.5
Aa31LG1G15170 Aethionema arabicum HOM05D000909 ORTHO05D008936 3.2e-26 124.4 155 49.7
Actinidia12102 Actinidia chinensis HOM05D006999 ORTHO05D008936 2.2e-22 111.7 150 45.3
MD02G1156600 Malus domestica HOM05D006999 ORTHO05D008936 5.4e-21 107.1 145 42.8
HanXRQChr09g0268161 Helianthus annuus HOM05D006999 ORTHO05D008936 5.9e-20 103.6 150 41.3
FvH4_1g14250 Fragaria vesca HOM05D000909 ORTHO05D000928 4.0e-16 90.9 162 37.0
SalBow1G1508 Salvia bowleyana HOM05D006596 ORTHO05D008497 5.0e-11 73.9 512 21.9
AagrBONN_evm.TU.Sc2ySwM_344.143 Anthoceros agrestis HOM05D004079 ORTHO05D008936 1.5e-10 72.4 115 31.3
Pp3c4_14140 Physcomitrium patens HOM05D006999 ORTHO05D008936 1.5e-10 72.4 168 26.2
CARHR207160 Cardamine hirsuta HOM05D006596 ORTHO05D008497 2.1e-09 68.6 312 21.5
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 4.7e-09 67.4 168 26.8
Migut.O00313 Erythranthe guttata HOM05D006596 ORTHO05D008497 4.0e-08 64.3 182 28.0
AagrBONN_evm.TU.Sc2ySwM_362.266 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.2e-08 63.9 475 21.7
GSVIVG01017111001 Vitis vinifera HOM05D006749 ORTHO05D008352 2.6e-07 61.6 207 26.1
EL10Ac6g14214 Beta vulgaris HOM05D006999 ORTHO05D008936 4.4e-07 60.8 79 43.0
Sopen01g002840 Solanum pennellii HOM05D006596 ORTHO05D008497 4.4e-07 60.8 414 20.5
QL05p024247 Quercus lobata HOM05D006749 ORTHO05D008352 7.5e-07 60.1 207 24.6
CSS0018907 Camellia sinensis var. sinensis HOM05D006749 ORTHO05D008352 9.8e-07 59.7 206 24.8
ATR1149G109 Amborella trichopoda HOM05D007202 ORTHO05D009125 1.3e-06 59.3 190 25.8
MSTRG.11079 Avicennia marina HOM05D006749 ORTHO05D008352 1.3e-06 59.3 206 23.8
FAN01G0431 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.3e-06 59.3 176 25.0
Lalb_Chr02g0154271 Lupinus albus HOM05D006596 ORTHO05D008497 1.3e-06 59.3 159 25.8
Nitab4.5_0006134g0060 Nicotiana tabacum HOM05D000424 ORTHO05D000355 1.7e-06 58.9 221 24.4
Pp3c16_9420 Physcomitrium patens HOM05D006999 ORTHO05D008936 1.7e-06 58.9 129 27.9
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 2.2e-06 58.5 113 25.7
TAR383G0079 Trochodendron aralioides HOM05D007686 ORTHO05D009709 2.9e-06 58.2 113 25.7
PGSC0003DMG400021371 Solanum tuberosum HOM05D006596 ORTHO05D008497 3.7e-06 57.8 422 20.9
Sp3g14360 Schrenkiella parvula HOM05D006749 ORTHO05D008352 4.9e-06 57.4 210 24.8
SEGI_11175 Sequoiadendron giganteum HOM05D007202 ORTHO05D009125 4.9e-06 57.4 158 25.9
Actinidia08976 Actinidia chinensis HOM05D006749 ORTHO05D008352 8.3e-06 56.6 207 25.1
ATR0684G123 Amborella trichopoda HOM05D006232 ORTHO05D007746 8.3e-06 56.6 212 23.6
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 8.3e-06 56.6 165 24.2
AUR62016443 Chenopodium quinoa HOM05D006749 ORTHO05D008352 8.3e-06 56.6 193 24.4
QL03p048629 Quercus lobata HOM05D000001 ORTHO05D000003 8.3e-06 56.6 172 25.0
Thecc.04G040600 Theobroma cacao HOM05D007157 ORTHO05D009045 8.3e-06 56.6 201 25.9


User provided reference genes

Program Settings