Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G023600 Phaseolus vulgaris HOM05D007578 ORTHO05D009497 3.6e-56 221.9 161 100.0
Glyma.11G060900 Glycine max HOM05D007578 ORTHO05D009497 1.5e-46 189.9 163 89.6
Glyma.01G182600 Glycine max HOM05D007578 ORTHO05D009497 2.9e-45 185.7 170 87.1
Ca_24809_v3 Cicer arietinum L. HOM05D007578 ORTHO05D009497 6.7e-34 147.9 156 69.9
arahy.Tifrunner.gnm1.ann1.25C3YR Arachis hypogaea HOM05D007578 ORTHO05D009497 6.3e-32 141.4 172 75.0
arahy.Tifrunner.gnm1.ann1.UX6CPD Arachis hypogaea HOM05D007578 ORTHO05D009497 8.2e-32 141.0 172 75.0
Psat0s4627g0160 Pisum sativum HOM05D007578 ORTHO05D009497 1.4e-31 140.2 156 71.8
Medtr5g018590 Medicago truncatula HOM05D007578 ORTHO05D009497 2.0e-30 136.3 156 68.6
TPR.G29848 Trifolium pratense HOM05D007578 ORTHO05D009497 3.2e-28 129.0 160 66.9
Lalb_Chr16g0378091 Lupinus albus HOM05D007578 ORTHO05D009497 5.5e-28 128.3 170 70.6
Lalb_Chr16g0378311 Lupinus albus HOM05D007578 ORTHO05D009497 5.5e-28 128.3 170 70.6
QL06p044247 Quercus lobata HOM05D007578 ORTHO05D009497 7.4e-25 117.9 156 67.9
Haze_15166 Corylus avellana HOM05D007578 ORTHO05D009497 1.4e-23 113.6 173 65.9
CSS0031523 Camellia sinensis var. sinensis HOM05D007578 ORTHO05D009497 4.5e-22 108.6 157 69.4
CSS0032257 Camellia sinensis var. sinensis HOM05D007578 ORTHO05D009497 4.5e-22 108.6 157 69.4
Manes.13G132100 Manihot esculenta HOM05D007578 ORTHO05D009497 5.9e-22 108.2 159 66.0
Thecc.01G045800 Theobroma cacao HOM05D007578 ORTHO05D009497 1.0e-21 107.5 164 64.0
TAR628G0552 Trochodendron aralioides HOM05D007578 ORTHO05D009497 1.3e-21 107.1 155 71.0
Potri.007G034300 Populus trichocarpa HOM05D007578 ORTHO05D009497 2.9e-21 105.9 170 63.5
Sabra07G0029900 Salix brachista HOM05D007578 ORTHO05D009497 5.0e-21 105.1 170 60.6
Gohir.A02G161500 Gossypium hirsutum HOM05D007578 ORTHO05D009497 6.5e-21 104.8 164 56.7
Gorai.003G019400 Gossypium raimondii HOM05D007578 ORTHO05D009497 6.5e-21 104.8 164 58.5
TAR376G0355 Trochodendron aralioides HOM05D007578 ORTHO05D009497 2.5e-20 102.8 121 78.5
Peaxi162Scf00535g00071 Petunia axillaris HOM05D007578 ORTHO05D009497 1.2e-19 100.5 153 60.8
Gohir.A11G045100 Gossypium hirsutum HOM05D007578 ORTHO05D009497 1.6e-19 100.1 144 69.4
CANSAT01G2356 Cannabis sativa HOM05D007578 ORTHO05D009497 2.7e-19 99.4 166 65.7
Actinidia36527 Actinidia chinensis HOM05D007578 ORTHO05D009497 3.6e-19 99.0 160 66.2
COL.COLO4_22180 Corchorus olitorius HOM05D007578 ORTHO05D009497 3.6e-19 99.0 171 62.6
Hma1.2p1_0261F.1_g104930 Hydrangea macrophylla HOM05D007578 ORTHO05D009497 3.6e-19 99.0 155 63.2
THA.LOC104804219 Tarenaya hassleriana HOM05D007578 ORTHO05D009497 3.6e-19 99.0 153 69.3
Ciclev10026636m.g Citrus clementina HOM05D007578 ORTHO05D009497 7.9e-19 97.8 158 50.6
Duzib264G1198 Durio zibethinus HOM05D007578 ORTHO05D009497 1.0e-18 97.4 161 58.4
Nitab4.5_0007463g0020 Nicotiana tabacum HOM05D007578 ORTHO05D009497 1.0e-18 97.4 160 63.8
PGSC0003DMG400037576 Solanum tuberosum HOM05D007578 ORTHO05D009497 1.0e-18 97.4 157 63.1
Gohir.D11G048600 Gossypium hirsutum HOM05D007578 ORTHO05D009497 1.4e-18 97.1 170 62.4
Cc07_g05400 Coffea canephora HOM05D007578 ORTHO05D009497 1.8e-18 96.7 128 75.0
CAN.G836.20 Capsicum annuum HOM05D007578 ORTHO05D009497 5.1e-18 95.1 127 75.6
CiPaw.01G029100 Carya illinoinensis HOM05D007578 ORTHO05D009497 5.1e-18 95.1 164 63.4
Migut.H00501 Erythranthe guttata HOM05D007578 ORTHO05D009497 5.1e-18 95.1 122 66.4
Oeu032922.1 Olea europaea HOM05D007578 ORTHO05D009497 5.1e-18 95.1 164 64.0
BraA04t17423Z Brassica rapa HOM05D007578 ORTHO05D009497 6.7e-18 94.7 159 62.3
Sp4g02640 Schrenkiella parvula HOM05D007578 ORTHO05D009497 6.7e-18 94.7 131 69.5
BcaB06g27923 Brassica carinata HOM05D007578 ORTHO05D009497 8.8e-18 94.4 142 65.5
A04p18050 Brassica napus HOM05D007578 ORTHO05D009497 8.8e-18 94.4 159 62.3
Gorai.007G052200 Gossypium raimondii HOM05D007578 ORTHO05D009497 8.8e-18 94.4 170 61.8
CARHR114700 Cardamine hirsuta HOM05D007578 ORTHO05D009497 1.5e-17 93.6 129 70.5
Nitab4.5_0000108g0140 Nicotiana tabacum HOM05D007578 ORTHO05D009497 1.5e-17 93.6 160 61.9
AL4G13660 Arabidopsis lyrata HOM05D007578 ORTHO05D009497 2.0e-17 93.2 148 64.2
Duzib147G1180 Durio zibethinus HOM05D007578 ORTHO05D009497 2.0e-17 93.2 167 63.5
Aa31LG7G13200 Aethionema arabicum HOM05D007578 ORTHO05D009497 2.6e-17 92.8 163 59.5
Carub.0004s0288 Capsella rubella HOM05D007578 ORTHO05D009497 2.6e-17 92.8 131 69.5
AT2G23670 Arabidopsis thaliana HOM05D007578 ORTHO05D009497 4.4e-17 92.0 146 65.8
C04p52990 Brassica napus HOM05D007578 ORTHO05D009497 4.4e-17 92.0 159 61.6
BolC4t26860H Brassica oleracea HOM05D007578 ORTHO05D009497 4.4e-17 92.0 159 61.6
DCAR_010946 Daucus carota HOM05D007578 ORTHO05D009497 4.4e-17 92.0 158 63.9
SalBow1G1613 Salvia bowleyana HOM05D007578 ORTHO05D009497 4.4e-17 92.0 120 73.3
Gohir.D03G019000 Gossypium hirsutum HOM05D007578 ORTHO05D009497 5.7e-17 91.7 155 56.8
MELO3C020917.2 Cucumis melo HOM05D007578 ORTHO05D009497 1.3e-16 90.5 145 66.9
Sopen02g034790 Solanum pennellii HOM05D007578 ORTHO05D009497 1.7e-16 90.1 164 61.6
MSTRG.23805 Avicennia marina HOM05D007578 ORTHO05D009497 2.8e-16 89.4 133 68.4
Sc03g0001220 Simmondsia chinensis HOM05D007578 ORTHO05D009497 2.8e-16 89.4 158 51.3
Lj4P136T24 Lonicera japonica HOM05D007578 ORTHO05D009497 3.7e-16 89.0 122 68.0
Cpa.g.sc15.63 Carica papaya HOM05D007578 ORTHO05D009497 8.2e-16 87.8 162 58.6
MD02G1158500 Malus domestica HOM05D007578 ORTHO05D009497 8.2e-16 87.8 144 63.9
Lsat_1_v5_gn_3_94000 Lactuca sativa HOM05D007578 ORTHO05D009497 1.8e-15 86.7 153 59.5
TWI53G0440 Tripterygium wilfordii HOM05D007578 ORTHO05D009497 1.8e-15 86.7 163 58.3
ClCG02G013060 Citrullus lanatus HOM05D007578 ORTHO05D009497 5.3e-15 85.1 137 68.6
Rhsim06G0070400 Rhododendron simsii HOM05D002920 ORTHO05D009497 5.3e-15 85.1 150 66.7
Solyc02g090100.1 Solanum lycopersicum HOM05D007578 ORTHO05D009497 5.3e-15 85.1 164 61.0
SGA_v2.0_scaffold15G07205 Striga asiatica HOM05D007578 ORTHO05D009497 1.2e-14 84.0 134 66.4
MBI07_g23234_MAGBIO Magnolia biondii HOM05D007578 ORTHO05D009497 2.0e-14 83.2 159 57.2
CsaV3_2G017140 Cucumis sativus L. HOM05D007578 ORTHO05D009497 2.6e-14 82.8 162 60.5
Dinv39922 Davidia involucrata HOM05D007578 ORTHO05D009497 1.3e-13 80.5 210 51.9
Thhalv10000353m.g Eutrema salsugineum HOM05D007578 ORTHO05D009497 1.3e-13 80.5 148 61.5
EL10Ac6g14844 Beta vulgaris HOM05D007578 ORTHO05D009497 1.7e-13 80.1 146 56.2
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 5.0e-13 78.6 137 62.8
Sed0003773 Sechium edule HOM05D007578 ORTHO05D009497 5.0e-13 78.6 127 67.7
Ah.03g142130 Amaranthus hybridus HOM05D007578 ORTHO05D009497 6.5e-13 78.2 159 56.6
CDE11G1131 Ceratophyllum demersum HOM05D007578 ORTHO05D009497 7.2e-12 74.7 131 55.0
MD15G1273300 Malus domestica HOM05D007578 ORTHO05D009497 9.4e-12 74.3 159 56.0
Dinv26776 Davidia involucrata HOM05D007578 ORTHO05D009497 1.2e-11 73.9 140 60.7
Prupe.7G145300 Prunus persica HOM05D007578 ORTHO05D009497 1.6e-11 73.6 146 62.3
Atru.chr3.471 Acer truncatum HOM05D007578 ORTHO05D009497 4.7e-11 72.0 155 56.1
FAN26G3047 Fragaria x ananassa HOM05D007578 ORTHO05D009497 1.0e-10 70.9 141 58.2
PGR102G1240 Punica granatum HOM05D007578 ORTHO05D009497 1.0e-10 70.9 156 56.4
PSO170G5738 Papaver somniferum HOM05D007578 ORTHO05D009497 1.8e-10 70.1 172 53.5
Aqoxy2G01906 Aquilegia oxysepala HOM05D007578 ORTHO05D009497 3.0e-10 69.3 139 61.2
FvH4_1g14510 Fragaria vesca HOM05D007578 ORTHO05D009497 3.0e-10 69.3 141 57.4
Peaxi162Scf00150g00132 Petunia axillaris HOM05D007578 ORTHO05D009497 3.0e-10 69.3 100 71.0
FAN23G2171 Fragaria x ananassa HOM05D007578 ORTHO05D009497 6.7e-10 68.2 136 57.4
HanXRQChr12g0378461 Helianthus annuus HOM05D007578 ORTHO05D009497 8.8e-10 67.8 135 40.7
PSO017G5052 Papaver somniferum HOM05D007578 ORTHO05D009497 5.7e-09 65.1 154 56.5
HPP92_014833 Vanilla planifolia HOM05D007578 ORTHO05D009497 1.3e-08 63.9 121 48.8
ECA246G0471 Erigeron canadensis HOM05D007578 ORTHO05D009497 1.7e-08 63.5 109 65.1
FAN19G1163 Fragaria x ananassa HOM05D007578 ORTHO05D009497 3.7e-08 62.4 148 59.5
ATR0787G067 Amborella trichopoda HOM05D007578 ORTHO05D009497 4.8e-08 62.0 130 53.1
FAN28G2485 Fragaria x ananassa HOM05D007578 ORTHO05D009497 3.1e-07 59.3 94 66.0
CAN.G1525.2 Capsicum annuum HOM05D007578 ORTHO05D009497 5.3e-07 58.5 151 53.6
RcHm_v2.0_Chr2g0103251 Rosa chinensis HOM05D007578 ORTHO05D009497 5.3e-07 58.5 124 56.5


User provided reference genes

Program Settings