Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G018900 Phaseolus vulgaris HOM05D005490 ORTHO05D006606 1.0e-246 856.7 507 100.0
VMungo1215G3252 Vigna mungo HOM05D005490 ORTHO05D006606 5.5e-229 797.7 504 92.7
Glyma.01G186000 Glycine max HOM05D005490 ORTHO05D006606 9.4e-229 797.0 507 91.5
Glyma.11G056000 Glycine max HOM05D005490 ORTHO05D006606 3.7e-225 785.0 508 92.1
Lj2g0003149 Lotus japonicus HOM05D005490 ORTHO05D006606 5.0e-214 748.0 485 87.4
arahy.Tifrunner.gnm1.ann1.JF37M9 Arachis hypogaea HOM05D005490 ORTHO05D006606 6.8e-203 711.1 485 86.2
arahy.Tifrunner.gnm1.ann1.5GG3L5 Arachis hypogaea HOM05D005490 ORTHO05D006606 6.0e-199 698.0 520 82.5
Psat2g166360 Pisum sativum HOM05D005490 ORTHO05D006606 1.3e-198 696.8 504 80.6
Lalb_Chr05g0213291 Lupinus albus HOM05D005490 ORTHO05D006606 1.5e-197 693.3 488 82.6
Ca_24770_v3 Cicer arietinum L. HOM05D005490 ORTHO05D006606 5.6e-197 691.4 487 87.1
TPR.G30705 Trifolium pratense HOM05D005490 ORTHO05D006606 2.1e-196 689.5 506 81.2
Dinv29986 Davidia involucrata HOM05D005490 ORTHO05D006606 3.7e-193 678.7 510 77.1
Medtr5g017430 Medicago truncatula HOM05D005490 ORTHO05D006606 1.4e-192 676.8 509 80.0
QL06p041379 Quercus lobata HOM05D005490 ORTHO05D006606 2.1e-191 672.9 523 75.7
Ciclev10025320m.g Citrus clementina HOM05D005490 ORTHO05D006606 2.3e-190 669.5 505 76.0
Potri.007G044100 Populus trichocarpa HOM05D005490 ORTHO05D006606 4.3e-189 665.2 491 79.0
CiPaw.01G018200 Carya illinoinensis HOM05D005490 ORTHO05D006606 1.6e-188 663.3 492 76.8
GSVIVG01022130001 Vitis vinifera HOM05D005490 ORTHO05D006606 1.6e-188 663.3 510 76.7
Manes.12G106800 Manihot esculenta HOM05D005490 ORTHO05D006606 4.0e-187 658.7 491 78.0
Duzib187G0068 Durio zibethinus HOM05D005490 ORTHO05D006606 2.6e-186 656.0 522 76.2
Lj7A69T47 Lonicera japonica HOM05D005490 ORTHO05D006606 1.3e-185 653.7 542 71.0
Prupe.7G133300 Prunus persica HOM05D005490 ORTHO05D006606 2.4e-184 649.4 485 77.1
Thecc.01G056300 Theobroma cacao HOM05D005490 ORTHO05D006606 2.4e-184 649.4 489 78.7
TWI09G1398 Tripterygium wilfordii HOM05D005490 ORTHO05D006606 1.7e-182 643.3 489 76.1
Cfa004023 Carpinus fangiana HOM05D005490 ORTHO05D006606 1.1e-181 640.6 489 76.1
Nn5g30300 Nelumbo nucifera HOM05D005490 ORTHO05D006606 1.1e-181 640.6 511 76.3
Gohir.D11G199100 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.5e-181 640.2 489 74.8
Gorai.007G213300 Gossypium raimondii HOM05D005490 ORTHO05D006606 3.3e-181 639.0 508 76.6
Actinidia03792 Actinidia chinensis HOM05D005490 ORTHO05D006606 9.6e-181 637.5 503 75.1
Sabra07G0038800 Salix brachista HOM05D005490 ORTHO05D006606 8.1e-180 634.4 502 73.5
Cc07_g05990 Coffea canephora HOM05D005490 ORTHO05D006606 1.1e-179 634.0 488 77.9
CANSAT01G1717 Cannabis sativa HOM05D005490 ORTHO05D006606 3.1e-179 632.5 452 78.8
Gohir.A11G192400 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.4e-176 623.6 487 76.2
COL.COLO4_11415 Corchorus olitorius HOM05D005490 ORTHO05D006606 2.4e-176 622.9 450 79.8
Solyc02g090850.3 Solanum lycopersicum HOM05D005490 ORTHO05D006606 1.0e-174 617.5 451 76.1
RcHm_v2.0_Chr2g0105671 Rosa chinensis HOM05D005490 ORTHO05D006606 1.7e-174 616.7 503 72.2
PGSC0003DMG400004042 Solanum tuberosum HOM05D005490 ORTHO05D006606 2.3e-174 616.3 451 75.8
Nitab4.5_0002016g0110 Nicotiana tabacum HOM05D005490 ORTHO05D006606 2.5e-173 612.8 495 71.3
CsaV3_2G016660 Cucumis sativus L. HOM05D005490 ORTHO05D006606 3.3e-173 612.5 452 77.0
DCAR_025733 Daucus carota HOM05D005490 ORTHO05D006606 5.3e-171 605.1 512 68.8
Hma1.2p1_0461F.1_g157810 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 9.0e-171 604.4 504 74.0
Sed0007368 Sechium edule HOM05D005490 ORTHO05D006606 9.0e-171 604.4 491 73.1
FAN28G1226 Fragaria x ananassa HOM05D005490 ORTHO05D006606 5.8e-170 601.7 517 70.2
CAN.G660.7 Capsicum annuum HOM05D005490 ORTHO05D006606 4.9e-169 598.6 451 74.3
FAN19G0012 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.4e-168 597.0 499 70.7
Oeu031525.2 Olea europaea HOM05D005490 ORTHO05D006606 1.0e-166 590.9 505 70.7
Sc03g0001580 Simmondsia chinensis HOM05D005490 ORTHO05D006606 5.1e-166 588.6 488 70.7
ClCG02G012530 Citrullus lanatus HOM05D005490 ORTHO05D006606 2.5e-165 586.3 507 71.0
PSO170G3823 Papaver somniferum HOM05D005490 ORTHO05D006606 9.6e-165 584.3 450 74.2
PSO210G6251 Papaver somniferum HOM05D005490 ORTHO05D006606 1.6e-164 583.6 450 74.4
Aa31LG6G13990 Aethionema arabicum HOM05D005490 ORTHO05D006606 3.6e-164 582.4 502 68.3
Gohir.A02G157300 Gossypium hirsutum HOM05D005490 ORTHO05D006606 3.1e-163 579.3 492 73.4
Sp7g34780 Schrenkiella parvula HOM05D005490 ORTHO05D006606 4.0e-163 578.9 507 69.2
CSS0049924 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 1.3e-161 573.9 497 68.8
HanXRQChr14g0442791 Helianthus annuus HOM05D005490 ORTHO05D006606 4.9e-161 572.0 506 68.6
A01p01850 Brassica napus HOM05D005490 ORTHO05D006606 3.2e-160 569.3 488 70.3
BraA01t00174Z Brassica rapa HOM05D005490 ORTHO05D006606 3.2e-160 569.3 488 70.3
Carub.0007s0317 Capsella rubella HOM05D005490 ORTHO05D006606 3.2e-160 569.3 486 69.5
Migut.H00433 Erythranthe guttata HOM05D005490 ORTHO05D006606 4.2e-160 568.9 498 70.3
Hund16323 Selenicereus undatus HOM05D005490 ORTHO05D006606 5.4e-160 568.5 481 73.2
Lsat_1_v5_gn_2_84101 Lactuca sativa HOM05D005490 ORTHO05D006606 1.6e-159 567.0 511 67.3
THA.LOC104804216 Tarenaya hassleriana HOM05D005490 ORTHO05D006606 6.0e-159 565.1 489 68.5
Gorai.003G025100 Gossypium raimondii HOM05D005490 ORTHO05D006606 1.0e-158 564.3 487 74.1
EL10Ac6g15745 Beta vulgaris HOM05D005490 ORTHO05D006606 5.1e-158 562.0 523 67.3
C01p01990 Brassica napus HOM05D005490 ORTHO05D006606 1.1e-157 560.8 488 68.4
AT4G36980 Arabidopsis thaliana HOM05D005490 ORTHO05D006606 4.3e-157 558.9 506 68.8
Thhalv10025018m.g Eutrema salsugineum HOM05D005490 ORTHO05D006606 4.3e-157 558.9 503 67.8
ECA238G0711 Erigeron canadensis HOM05D005490 ORTHO05D006606 1.6e-156 557.0 517 70.4
Oeu062437.1 Olea europaea HOM05D005490 ORTHO05D006606 2.1e-156 556.6 490 66.9
AL7G13750 Arabidopsis lyrata HOM05D005490 ORTHO05D006606 2.8e-156 556.2 486 68.7
BcaNung02520 Brassica carinata HOM05D005490 ORTHO05D006606 6.9e-155 551.6 451 71.2
BolC1t00193H Brassica oleracea HOM05D005490 ORTHO05D006606 2.0e-154 550.1 499 66.7
Potri.005G138200 Populus trichocarpa HOM05D005490 ORTHO05D006606 8.4e-153 544.7 377 80.6
Gohir.D03G023600 Gossypium hirsutum HOM05D005490 ORTHO05D006606 5.5e-152 542.0 452 72.3
MD02G1172000 Malus domestica HOM05D005490 ORTHO05D006606 6.0e-151 538.5 376 78.5
SGA_v2.0_scaffold15G07303 Striga asiatica HOM05D005490 ORTHO05D006606 8.7e-150 534.6 452 70.1
CDE08G0045 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 1.6e-148 530.4 512 61.7
Os03g0395900 Oryza sativa ssp. japonica HOM05D005490 ORTHO05D006606 1.8e-147 526.9 451 69.2
CARHR245520 Cardamine hirsuta HOM05D005490 ORTHO05D006606 3.1e-147 526.2 504 63.7
TAR381G1106 Trochodendron aralioides HOM05D005490 ORTHO05D006606 1.9e-144 516.9 378 77.8
CDE06G1923 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 1.5e-141 507.3 452 65.9
AUR62001928 Chenopodium quinoa HOM05D005490 ORTHO05D006606 2.8e-140 503.1 517 60.3
FAN26G0668 Fragaria x ananassa HOM05D005490 ORTHO05D006606 5.3e-139 498.8 390 73.6
Aqoxy5G01229 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 4.5e-138 495.7 378 74.1
Peaxi162Scf00450g00420 Petunia axillaris HOM05D005490 ORTHO05D006606 1.0e-137 494.6 502 59.6
HPP92_004114 Vanilla planifolia HOM05D005490 ORTHO05D006606 2.0e-133 480.3 489 59.3
ATR1102G026 Amborella trichopoda HOM05D005490 ORTHO05D006606 2.2e-132 476.9 507 61.3
Sabra05G0112300 Salix brachista HOM05D005490 ORTHO05D006606 6.9e-131 471.9 577 55.3
FAN23G2111 Fragaria x ananassa HOM05D005490 ORTHO05D006606 2.5e-128 463.4 393 70.5
AUR62003882 Chenopodium quinoa HOM05D005490 ORTHO05D006606 1.5e-120 437.6 477 57.7
Rhsim08G0100400 Rhododendron simsii HOM05D005490 ORTHO05D006606 2.6e-114 416.8 450 62.2
Ah.03g145080 Amaranthus hybridus HOM05D005490 ORTHO05D006606 1.2e-111 407.9 385 66.8
Atru.chr3.327 Acer truncatum HOM05D005490 ORTHO05D006606 6.8e-110 402.1 311 76.8
Nitab4.5_0002440g0010 Nicotiana tabacum HOM05D005490 ORTHO05D006606 3.4e-109 399.8 507 50.3
Mapoly0012s0107 Marchantia polymorpha HOM05D005490 ORTHO05D006606 4.4e-109 399.4 469 55.2
MD15G1284300 Malus domestica HOM05D005490 ORTHO05D006606 1.6e-106 391.0 323 71.5
Eucgr.I00926 Eucalyptus grandis HOM05D005490 ORTHO05D006606 3.5e-106 389.8 365 68.5
unitig_899.g14662 Utricularia gibba HOM05D005490 ORTHO05D006606 3.8e-105 386.3 382 65.4
Hma1.2p1_0461F.1_g157800 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 2.5e-104 383.6 374 66.8
MELO3C020875.2 Cucumis melo HOM05D005490 ORTHO05D006606 3.6e-103 379.8 311 74.3
FvH4_1g16060 Fragaria vesca HOM05D005490 ORTHO05D006606 1.5e-101 374.4 346 68.2
Dinv39848 Davidia involucrata HOM05D005490 ORTHO05D006606 1.3e-100 371.3 291 73.5
vmacro17955 Vaccinium macrocarpon HOM05D005490 ORTHO05D006606 1.5e-96 357.8 377 62.6
Pp3c7_5520 Physcomitrium patens HOM05D005490 ORTHO05D006606 4.9e-92 342.8 528 50.6
Pp3c11_20900 Physcomitrium patens HOM05D005490 ORTHO05D006606 3.0e-81 307.0 466 47.0
Sopen02g035470 Solanum pennellii HOM05D005490 ORTHO05D006606 8.6e-81 305.4 244 72.1
Haze_15401 Corylus avellana HOM05D005490 ORTHO05D006606 9.8e-77 292.0 252 69.8
Haze_15403 Corylus avellana HOM05D005490 ORTHO05D006606 4.9e-76 289.7 252 69.8
HPP92_004074 Vanilla planifolia HOM05D005490 ORTHO05D006606 4.1e-75 286.6 326 57.1
SEGI_41077 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 1.1e-67 261.9 386 57.0
Actinidia16483 Actinidia chinensis HOM05D005490 ORTHO05D006606 9.6e-64 248.8 322 56.2
SMO356G0652 Selaginella moellendorffii HOM05D005490 ORTHO05D006606 1.3e-60 238.4 250 54.0
Zm00001eb019290 Zea mays HOM05D005490 ORTHO05D006606 1.4e-59 235.0 276 55.8
SEGI_00791 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 4.6e-58 229.9 154 76.0
Atru.chr3.328 Acer truncatum HOM05D005490 ORTHO05D006606 1.1e-54 218.8 128 86.7
Cpa.g.sc55.148 Carica papaya HOM05D005490 ORTHO05D006606 1.2e-53 215.3 128 85.9
Actinidia36493 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.7e-52 211.5 353 48.2
MD15G1284200 Malus domestica HOM05D005490 ORTHO05D006606 2.2e-52 211.1 126 84.9
VMungo1309G0325 Vigna mungo HOM05D005490 ORTHO05D006606 5.6e-48 196.4 163 67.5
CBR_g38045 Chara braunii HOM05D005490 ORTHO05D000004 9.9e-45 185.7 481 39.7
VMungo0720G1861 Vigna mungo HOM05D005490 ORTHO05D006606 1.7e-44 184.9 146 70.5
Actinidia16484 Actinidia chinensis HOM05D005490 ORTHO05D006606 4.5e-37 160.2 84 92.9
AagrBONN_evm.TU.Sc2ySwM_344.4468 Anthoceros agrestis HOM05D005490 ORTHO05D006606 3.8e-36 157.1 477 32.7
CSS0031445 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 4.5e-29 133.7 131 62.6
VMungo1309G1585 Vigna mungo HOM05D005490 ORTHO05D006606 3.8e-28 130.6 91 78.0
VMungo0251G2361 Vigna mungo HOM05D007793 ORTHO05D010104 5.5e-27 126.7 90 74.4
SHI08459 Sapria himalayana HOM05D005490 ORTHO05D006606 1.1e-24 119.0 282 36.2
MD02G1172100 Malus domestica HOM05D005490 ORTHO05D006606 7.7e-21 106.3 129 58.1
CDE08G1038 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 1.0e-20 105.9 385 28.3
FAN22G1581 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.7e-20 105.1 72 73.6
FAN17G2271 Fragaria x ananassa HOM05D005490 ORTHO05D006606 5.5e-19 100.1 66 77.3
Aqoxy5G01228 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 2.6e-16 91.3 121 50.4
FAN17G1267 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.7e-15 88.6 64 75.0
Actinidia36494 Actinidia chinensis HOM05D005490 ORTHO05D006606 4.8e-15 87.0 74 70.3
Atru.chr10.1611 Acer truncatum HOM05D005490 ORTHO05D006606 6.5e-12 76.6 50 74.0
Cre12.g498350 Chlamydomonas reinhardtii HOM05D005490 ORTHO05D006606 4.4e-08 63.9 294 31.3
Actinidia12052 Actinidia chinensis HOM05D005490 ORTHO05D006606 5.7e-08 63.5 55 63.6
ECA233G0248 Erigeron canadensis HOM05D000047 ORTHO05D006606 2.8e-07 61.2 143 54.5
TAR381G1012 Trochodendron aralioides HOM05D005490 ORTHO05D006606 4.8e-07 60.5 96 52.1
Mapoly0045s0119 Marchantia polymorpha HOM05D006512 ORTHO05D008027 6.3e-07 60.1 88 36.4


User provided reference genes

Program Settings