Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 2403.2 1243 100.0
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 2119.0 1244 88.9
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1942.5 1248 81.6
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1700.6 1246 71.7
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1696.4 1258 70.4
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 1678.3 1245 71.2
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1643.2 1254 68.3
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1641.7 1254 69.1
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 0.0e+00 1611.7 1248 68.6
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1581.6 1237 66.9
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 0.0e+00 1498.0 1285 64.0
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1425.6 1264 60.6
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1421.0 1262 60.3
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1401.0 1264 59.3
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1359.0 1252 58.5
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1357.8 1262 58.3
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1355.9 1262 57.8
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1352.8 1254 58.2
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1344.3 1252 58.0
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1315.4 1263 56.1
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1315.1 1261 55.8
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1314.3 1261 56.8
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1313.5 1268 55.7
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1295.8 1263 55.5
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1280.4 1250 56.1
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1280.0 1251 56.4
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1278.1 1250 55.8
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1276.2 1264 54.6
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1275.0 1265 55.0
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1274.6 1265 54.7
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1269.2 1247 55.7
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1265.8 1250 56.1
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1250.7 1272 54.0
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1240.7 1269 53.9
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1238.4 1276 53.1
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1237.2 1254 54.6
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1232.6 1260 53.6
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1231.5 1260 53.9
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1222.2 1182 56.8
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1220.7 1254 54.5
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1189.1 1251 51.1
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1187.6 1265 52.0
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1173.7 1259 51.0
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1158.7 1260 50.6
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1157.9 1269 51.1
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1155.6 1248 51.1
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1148.3 1277 50.0
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1143.6 1253 49.9
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1136.3 1251 50.1
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1134.0 1258 49.8
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1126.7 1260 49.4
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1126.3 1104 55.5
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1123.6 1247 48.9
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 0.0e+00 1122.5 1244 51.7
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1120.9 1259 49.2
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1119.4 1250 49.3
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1116.3 1248 49.6
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1113.2 1252 49.4
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 0.0e+00 1110.9 1263 49.1
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 0.0e+00 1108.2 1144 53.9
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 0.0e+00 1102.4 1253 48.6
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 0.0e+00 1101.3 1264 48.9
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1099.7 1266 48.3
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 0.0e+00 1098.6 1270 48.7
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1090.5 1250 47.5
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 0.0e+00 1089.3 1265 48.1
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1088.6 1176 52.9
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 1085.9 1262 48.1
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 0.0e+00 1084.7 1242 48.7
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 0.0e+00 1083.9 1267 48.8
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 0.0e+00 1075.1 1239 48.7
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 8.5e-312 1074.7 1104 54.3
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 1.7e-311 1072.8 1241 49.5
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 1.2e-308 1063.5 1258 48.2
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 4.3e-306 1055.0 935 60.7
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 2.1e-305 1052.7 1015 55.5
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 5.3e-304 1048.1 1267 47.5
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 6.9e-304 1047.7 1257 47.9
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 6.4e-302 1041.2 1260 47.9
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 1.9e-301 1039.6 1266 47.5
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 9.3e-301 1037.3 1270 47.2
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 1.6e-300 1036.6 1259 48.6
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 2.5e-298 1029.2 1262 47.7
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 3.3e-298 1028.9 1243 47.4
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 4.8e-297 1025.0 1312 45.0
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 1.2e-295 1020.4 932 58.5
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 2.5e-290 1002.7 1269 45.9
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 5.1e-283 978.4 1247 45.2
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 6.7e-283 978.0 1214 45.6
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 6.3e-281 971.5 874 59.6
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 5.1e-275 951.8 1051 48.7
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 1.3e-241 840.9 982 48.0
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 4.5e-239 832.4 854 54.2
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 1.1e-219 768.1 1248 39.7
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 4.1e-216 756.1 963 46.1
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 7.1e-216 755.4 1011 45.4
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 5.6e-213 745.7 1288 36.8
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 4.9e-209 732.6 1241 37.1
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 3.1e-195 686.8 909 42.9
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 2.2e-172 610.9 796 42.7
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 1.0e-169 602.1 859 41.1
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 1.6e-167 594.7 799 43.8
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 3.7e-164 583.6 396 77.3
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 1.7e-161 574.7 1120 34.6
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 5.5e-160 569.7 569 54.0
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 7.4e-157 559.3 777 42.0
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 1.3e-140 505.4 429 64.8
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 2.9e-137 494.2 637 43.5
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 3.2e-115 421.0 608 41.0
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 8.9e-110 402.9 237 86.1
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 4.4e-109 400.6 456 47.6
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 3.4e-101 374.4 361 57.3
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 7.1e-99 366.7 351 59.8
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 4.6e-98 364.0 344 61.3
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 1.5e-96 359.0 340 60.9
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 2.4e-83 315.1 660 32.6
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 1.5e-80 305.8 450 36.9
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 4.9e-76 290.8 384 42.4
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 2.7e-66 258.5 167 80.8
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 3.0e-65 255.0 468 34.0
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 8.4e-60 236.9 337 38.0
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 2.5e-56 225.3 375 40.8
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.0e-48 199.1 293 40.3
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 3.3e-40 171.8 288 38.9
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 1.9e-27 129.4 154 47.4
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 2.1e-26 125.9 109 56.9
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 3.6e-26 125.2 159 41.5
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 1.8e-25 122.9 119 52.9
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 2.0e-21 109.4 313 31.0
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 5.0e-20 104.8 203 36.0
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 3.2e-19 102.1 128 39.8
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 7.0e-14 84.3 409 24.7
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 7.7e-13 80.9 61 63.9


User provided reference genes

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