Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G003700 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 2.8e-46 188.3 101 100.0
Phvul.002G004500 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 2.4e-45 185.3 101 88.1
VMungo1215G3393 Vigna mungo HOM05D006197 ORTHO05D007718 1.6e-38 162.5 104 76.0
VMungo1215G1228 Vigna mungo HOM05D006197 ORTHO05D007718 2.8e-38 161.8 103 76.7
Glyma.01G201200 Glycine max HOM05D006197 ORTHO05D007718 2.4e-37 158.7 105 75.2
Glyma.11G041000 Glycine max HOM05D006197 ORTHO05D007718 1.6e-33 146.0 101 72.3
Ca_24632_v3 Cicer arietinum L. HOM05D006197 ORTHO05D007718 1.1e-29 133.3 102 66.7
Medtr5g013975 Medicago truncatula HOM05D006197 ORTHO05D007718 1.4e-29 132.9 106 64.2
Lj2g0021118 Lotus japonicus HOM05D006197 ORTHO05D007718 1.8e-29 132.5 101 64.4
arahy.Tifrunner.gnm1.ann1.M9L3KI Arachis hypogaea HOM05D006197 ORTHO05D007718 1.2e-28 129.8 106 65.1
arahy.Tifrunner.gnm1.ann1.PC0NS4 Arachis hypogaea HOM05D006197 ORTHO05D007718 1.2e-28 129.8 106 65.1
Psat2g174760 Pisum sativum HOM05D006197 ORTHO05D007718 1.2e-28 129.8 103 64.1
AUR62007231 Chenopodium quinoa HOM05D006197 ORTHO05D007718 1.4e-26 122.9 101 62.4
AUR62018769 Chenopodium quinoa HOM05D006197 ORTHO05D007718 7.2e-26 120.6 101 58.4
Potri.001G146700 Populus trichocarpa HOM05D006197 ORTHO05D007718 4.6e-25 117.9 102 57.8
EL10Ac5g12195 Beta vulgaris HOM05D006197 ORTHO05D007718 6.1e-25 117.5 101 57.4
Haze_08298 Corylus avellana HOM05D006197 ORTHO05D007718 7.9e-25 117.1 101 63.4
MD16G1269400 Malus domestica HOM05D006197 ORTHO05D007718 7.9e-25 117.1 102 61.8
Prupe.5G046200 Prunus persica HOM05D006197 ORTHO05D007718 1.8e-24 115.9 101 62.4
Sabra01G0115400 Salix brachista HOM05D006197 ORTHO05D007718 2.3e-24 115.5 102 56.9
Lsat_1_v5_gn_6_66400 Lactuca sativa HOM05D006197 ORTHO05D007718 3.0e-24 115.2 111 57.7
Nitab4.5_0006693g0020 Nicotiana tabacum HOM05D006197 ORTHO05D007718 6.7e-24 114.0 103 55.3
Cfa012386 Carpinus fangiana HOM05D006197 ORTHO05D007718 1.1e-23 113.2 101 62.4
Ciclev10033154m.g Citrus clementina HOM05D006197 ORTHO05D007718 1.5e-23 112.8 104 57.7
Rhsim11G0011100 Rhododendron simsii HOM05D006197 ORTHO05D007718 2.0e-23 112.5 101 56.4
Eucgr.E00313 Eucalyptus grandis HOM05D006197 ORTHO05D007718 4.3e-23 111.3 101 62.4
HanXRQChr08g0234831 Helianthus annuus HOM05D006197 ORTHO05D007718 4.3e-23 111.3 109 57.8
PGSC0003DMG400024214 Solanum tuberosum HOM05D006197 ORTHO05D007718 4.3e-23 111.3 103 52.4
Ah.12g053650 Amaranthus hybridus HOM05D006197 ORTHO05D007718 5.7e-23 110.9 101 52.5
Nitab4.5_0002055g0120 Nicotiana tabacum HOM05D006197 ORTHO05D007718 5.7e-23 110.9 103 54.4
THA.LOC104819961 Tarenaya hassleriana HOM05D006197 ORTHO05D007718 5.7e-23 110.9 102 55.9
Lalb_Chr09g0323941 Lupinus albus HOM05D006197 ORTHO05D007718 7.4e-23 110.5 62 85.5
Manes.15G173000 Manihot esculenta HOM05D006197 ORTHO05D007718 7.4e-23 110.5 102 59.8
Sopen05g026900 Solanum pennellii HOM05D006197 ORTHO05D007718 7.4e-23 110.5 103 51.5
Sopen08g025860 Solanum pennellii HOM05D006197 ORTHO05D007718 7.4e-23 110.5 103 51.5
Solyc08g077280.1 Solanum lycopersicum HOM05D006197 ORTHO05D007718 9.7e-23 110.2 103 51.5
Sed0004723 Sechium edule HOM05D006197 ORTHO05D007718 1.7e-22 109.4 103 57.3
Thhalv10006335m.g Eutrema salsugineum HOM05D006197 ORTHO05D007718 2.8e-22 108.6 102 56.9
GSVIVG01013230001 Vitis vinifera HOM05D006197 ORTHO05D007718 2.8e-22 108.6 105 61.0
Duzib205G0278 Durio zibethinus HOM05D006197 ORTHO05D007718 3.7e-22 108.2 102 59.8
COL.COLO4_17110 Corchorus olitorius HOM05D006197 ORTHO05D007718 4.8e-22 107.8 101 60.4
Hma1.2p1_0311F.1_g121310 Hydrangea macrophylla HOM05D006197 ORTHO05D007718 4.8e-22 107.8 102 56.9
TPR.G6747 Trifolium pratense HOM05D006197 ORTHO05D007718 6.3e-22 107.5 58 84.5
Aa31LG10G14080 Aethionema arabicum HOM05D006197 ORTHO05D007718 8.2e-22 107.1 102 55.9
Gohir.A08G159600 Gossypium hirsutum HOM05D006197 ORTHO05D007718 8.2e-22 107.1 102 60.8
Gohir.D08G180000 Gossypium hirsutum HOM05D006197 ORTHO05D007718 8.2e-22 107.1 102 60.8
Gorai.004G188500 Gossypium raimondii HOM05D006197 ORTHO05D007718 8.2e-22 107.1 102 60.8
PGR042G3581 Punica granatum HOM05D006197 ORTHO05D007718 8.2e-22 107.1 104 62.5
TWI81G0993 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 8.2e-22 107.1 101 56.4
CsaV3_3G049530 Cucumis sativus L. HOM05D006197 ORTHO05D007718 1.1e-21 106.7 102 52.9
ECA240G0414 Erigeron canadensis HOM05D006197 ORTHO05D007718 1.1e-21 106.7 106 53.8
CiPaw.11G087500 Carya illinoinensis HOM05D006197 ORTHO05D007718 1.4e-21 106.3 102 54.9
MELO3C003373.2 Cucumis melo HOM05D006197 ORTHO05D007718 1.4e-21 106.3 101 58.4
Gohir.A04G000300 Gossypium hirsutum HOM05D006197 ORTHO05D007718 1.4e-21 106.3 102 60.8
SalBow1G7863 Salvia bowleyana HOM05D006197 ORTHO05D007718 1.4e-21 106.3 107 56.1
Cpa.g.sc6.409 Carica papaya HOM05D006197 ORTHO05D007718 1.8e-21 105.9 101 59.4
Thecc.03G234100 Theobroma cacao HOM05D006197 ORTHO05D007718 1.8e-21 105.9 101 57.4
Dinv28915 Davidia involucrata HOM05D006197 ORTHO05D007718 2.4e-21 105.5 102 55.9
Duzib068G0126 Durio zibethinus HOM05D006197 ORTHO05D007718 2.4e-21 105.5 102 57.8
MBI11_g07528_MAGBIO Magnolia biondii HOM05D006197 ORTHO05D007718 2.4e-21 105.5 103 54.4
Sed0016057 Sechium edule HOM05D006197 ORTHO05D007718 2.4e-21 105.5 102 56.9
FAN08G0099 Fragaria x ananassa HOM05D006197 ORTHO05D007718 3.1e-21 105.1 103 57.3
FAN04G1051 Fragaria x ananassa HOM05D006197 ORTHO05D007718 4.1e-21 104.8 102 55.9
DCAR_008300 Daucus carota HOM05D006197 ORTHO05D007718 5.3e-21 104.4 103 54.4
FAN18G0540 Fragaria x ananassa HOM05D006197 ORTHO05D007718 5.3e-21 104.4 103 56.3
Atru.chr6.1773 Acer truncatum HOM05D006197 ORTHO05D007718 6.9e-21 104.0 104 56.7
AL5G41940 Arabidopsis lyrata HOM05D006197 ORTHO05D007718 6.9e-21 104.0 101 54.5
AT3G59840 Arabidopsis thaliana HOM05D006197 ORTHO05D007718 6.9e-21 104.0 101 54.5
BcaB02g07441 Brassica carinata HOM05D006197 ORTHO05D007718 6.9e-21 104.0 102 53.9
CSS0031892 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 6.9e-21 104.0 109 55.0
CSS0033989 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 6.9e-21 104.0 109 55.0
CSS0037645 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 6.9e-21 104.0 109 55.0
Carub.0005s2656 Capsella rubella HOM05D006197 ORTHO05D007718 6.9e-21 104.0 101 54.5
RcHm_v2.0_Chr7g0208331 Rosa chinensis HOM05D006197 ORTHO05D007718 6.9e-21 104.0 101 58.4
Migut.N01790 Erythranthe guttata HOM05D006197 ORTHO05D007718 2.0e-20 102.4 106 55.7
Peaxi162Scf00084g00099 Petunia axillaris HOM05D006197 ORTHO05D007718 2.0e-20 102.4 98 54.1
Sp5g03300 Schrenkiella parvula HOM05D006197 ORTHO05D007718 2.0e-20 102.4 101 52.5
BcaC08g45013 Brassica carinata HOM05D006197 ORTHO05D007718 2.6e-20 102.1 102 54.9
C06p26450 Brassica napus HOM05D006197 ORTHO05D007718 2.6e-20 102.1 102 54.9
BolC6t37808H Brassica oleracea HOM05D006197 ORTHO05D007718 2.6e-20 102.1 102 54.9
Aqoxy1G03814 Aquilegia oxysepala HOM05D006197 ORTHO05D007718 3.4e-20 101.7 102 52.0
BcaC07g40556 Brassica carinata HOM05D006197 ORTHO05D007718 4.5e-20 101.3 102 53.9
A07p24860 Brassica napus HOM05D006197 ORTHO05D007718 4.5e-20 101.3 102 54.9
A09p52120 Brassica napus HOM05D006197 ORTHO05D007718 4.5e-20 101.3 102 53.9
BraA07t30130Z Brassica rapa HOM05D006197 ORTHO05D007718 4.5e-20 101.3 102 54.9
Cc08_g01810 Coffea canephora HOM05D006197 ORTHO05D007718 4.5e-20 101.3 103 52.4
BcaC07g40434 Brassica carinata HOM05D006197 ORTHO05D007718 5.9e-20 100.9 102 52.9
Cc00_g23310 Coffea canephora HOM05D006197 ORTHO05D007718 5.9e-20 100.9 103 51.5
Cc00_g30230 Coffea canephora HOM05D006197 ORTHO05D007718 7.7e-20 100.5 103 52.4
Cc00_g26570 Coffea canephora HOM05D006197 ORTHO05D007718 1.0e-19 100.1 103 51.5
FAN13G1034 Fragaria x ananassa HOM05D006197 ORTHO05D007718 1.0e-19 100.1 99 54.5
CARHR170180 Cardamine hirsuta HOM05D006197 ORTHO05D007718 1.3e-19 99.8 101 54.5
Gorai.008G229000 Gossypium raimondii HOM05D006197 ORTHO05D007718 1.3e-19 99.8 102 55.9
MBI02_g29718_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009071 1.3e-19 99.8 99 51.5
CANSAT64G2368 Cannabis sativa HOM05D006197 ORTHO05D007718 2.2e-19 99.0 108 50.9
QL12p007107 Quercus lobata HOM05D006197 ORTHO05D007718 2.9e-19 98.6 104 52.9
ATR1088G052 Amborella trichopoda HOM05D006197 ORTHO05D007718 5.0e-19 97.8 107 48.6
Dinv25183 Davidia involucrata HOM05D002285 ORTHO05D009255 5.0e-19 97.8 104 50.0
Nn1g03717 Nelumbo nucifera HOM05D006197 ORTHO05D007718 5.0e-19 97.8 98 54.1
Cc00_g31810 Coffea canephora HOM05D006197 ORTHO05D007718 6.5e-19 97.4 61 72.1
Cc08_g01990 Coffea canephora HOM05D006197 ORTHO05D007718 6.5e-19 97.4 61 72.1
Cc08_g02050 Coffea canephora HOM05D006197 ORTHO05D007718 6.5e-19 97.4 63 74.6
unitig_747.g21291 Utricularia gibba HOM05D006197 ORTHO05D007718 6.5e-19 97.4 106 50.9
Gohir.D12G213400 Gossypium hirsutum HOM05D006197 ORTHO05D007718 8.5e-19 97.1 102 53.9
Oeu014592.2 Olea europaea HOM05D006197 ORTHO05D007718 8.5e-19 97.1 110 50.0
PSO210G4997 Papaver somniferum HOM05D006197 ORTHO05D007718 8.5e-19 97.1 101 53.5
PSO832G1675 Papaver somniferum HOM05D006197 ORTHO05D007718 8.5e-19 97.1 101 53.5
TAR624G0346 Trochodendron aralioides HOM05D006197 ORTHO05D007718 8.5e-19 97.1 58 77.6
Sc01g0007760 Simmondsia chinensis HOM05D006197 ORTHO05D007718 1.4e-18 96.3 97 50.5
Oeu006551.1 Olea europaea HOM05D006197 ORTHO05D007718 3.2e-18 95.1 110 48.2
BolC8t51081H Brassica oleracea HOM05D000403 ORTHO05D004426 4.2e-18 94.7 58 75.9
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 1.2e-17 93.2 65 73.8
TWI15G0656 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 2.1e-17 92.4 103 54.4
Cc08_g01910 Coffea canephora HOM05D006197 ORTHO05D007718 3.6e-17 91.7 58 70.7
Mapoly0127s0016 Marchantia polymorpha HOM05D006197 ORTHO05D007718 3.9e-16 88.2 56 62.5
AagrBONN_evm.TU.Sc2ySwM_368.296 Anthoceros agrestis HOM05D006197 ORTHO05D007718 3.3e-15 85.1 50 66.0
Os05g0500450 Oryza sativa ssp. japonica HOM05D006197 ORTHO05D007718 5.7e-15 84.3 57 64.9
Duzib084G1370 Durio zibethinus HOM05D006197 ORTHO05D007718 1.3e-14 83.2 96 51.0
CBR_g8168 Chara braunii HOM05D006197 ORTHO05D007718 3.7e-14 81.6 56 62.5
Mapoly0046s0110 Marchantia polymorpha HOM05D006197 ORTHO05D007718 4.8e-14 81.3 58 58.6
Pp3c14_9970 Physcomitrium patens HOM05D006197 ORTHO05D007718 4.1e-13 78.2 94 43.6
Eucgr.C01972 Eucalyptus grandis HOM05D006197 ORTHO05D007718 5.3e-13 77.8 54 66.7
SMO119G0374 Selaginella moellendorffii HOM05D006197 ORTHO05D007718 7.7e-12 73.9 117 40.2
CAN.G799.18 Capsicum annuum HOM05D006197 ORTHO05D007718 2.5e-10 68.9 51 64.7
Cc08_g01940 Coffea canephora HOM05D000011 ORTHO05D000157 1.4e-08 63.2 32 81.2
Nn1g08520 Nelumbo nucifera HOM05D006197 ORTHO05D007718 1.4e-08 63.2 97 42.3
Migut.E01523 Erythranthe guttata HOM05D006197 ORTHO05D007718 1.1e-07 60.1 63 49.2
Migut.E01526 Erythranthe guttata HOM05D006197 ORTHO05D007718 1.5e-07 59.7 63 47.6
Oeu059313.1 Olea europaea HOM05D005235 ORTHO05D006938 2.0e-07 59.3 101 35.6
TPR.G6988 Trifolium pratense HOM05D006197 ORTHO05D007718 2.6e-07 58.9 66 50.0


User provided reference genes

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