Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G231100 Phaseolus vulgaris HOM05D003685 ORTHO05D003168 2.2e-31 138.7 86 100.0
arahy.Tifrunner.gnm1.ann1.20BG1F Arachis hypogaea HOM05D003685 ORTHO05D003168 2.3e-25 118.6 86 68.6
arahy.Tifrunner.gnm1.ann1.TR7VBX Arachis hypogaea HOM05D003685 ORTHO05D003168 2.3e-25 118.6 86 68.6
Glyma.11G217300 Glycine max HOM05D003685 ORTHO05D003168 4.0e-25 117.9 95 76.8
LjContig00141g0023457 Lotus japonicus HOM05D003685 ORTHO05D003168 6.7e-25 117.1 83 73.5
Lalb_Chr10g0104461 Lupinus albus HOM05D003685 ORTHO05D003168 6.7e-25 117.1 86 70.9
SalBow7G2561 Salvia bowleyana HOM05D003685 ORTHO05D003168 8.8e-25 116.7 86 82.6
CSS0016349 Camellia sinensis var. sinensis HOM05D003685 ORTHO05D003168 1.2e-24 116.3 86 84.9
AUR62023227 Chenopodium quinoa HOM05D003685 ORTHO05D003168 2.0e-24 115.5 85 83.5
Lj6g0007365 Lotus japonicus HOM05D003685 ORTHO05D003168 3.3e-24 114.8 83 84.3
SalBow3G2120 Salvia bowleyana HOM05D003685 ORTHO05D003168 7.5e-24 113.6 83 68.7
Actinidia22789 Actinidia chinensis HOM05D000008 ORTHO05D000005 1.3e-23 112.8 86 67.4
MELO3C022853.2 Cucumis melo HOM05D003685 ORTHO05D003168 1.7e-23 112.5 83 71.1
Psat2g041920 Pisum sativum HOM05D003685 ORTHO05D003168 2.2e-23 112.1 83 86.7
TPR.G3491 Trifolium pratense HOM05D003685 ORTHO05D003168 2.2e-23 112.1 83 80.7
ClCG03G008650 Citrullus lanatus HOM05D003685 ORTHO05D003168 3.7e-23 111.3 83 69.9
Nitab4.5_0000036g0480 Nicotiana tabacum HOM05D003685 ORTHO05D003168 4.8e-23 110.9 83 66.3
Solyc02g063340.1 Solanum lycopersicum HOM05D003685 ORTHO05D003168 4.8e-23 110.9 83 66.3
Sopen02g014410 Solanum pennellii HOM05D003685 ORTHO05D003168 4.8e-23 110.9 83 66.3
PGSC0003DMG400010392 Solanum tuberosum HOM05D003685 ORTHO05D003168 4.8e-23 110.9 83 66.3
CSS0039227 Camellia sinensis var. sinensis HOM05D003685 ORTHO05D003168 6.3e-23 110.5 86 66.3
AUR62023181 Chenopodium quinoa HOM05D003685 ORTHO05D003168 6.3e-23 110.5 85 81.2
CAN.G1067.5 Capsicum annuum HOM05D003685 ORTHO05D003168 8.3e-23 110.2 83 65.1
Nitab4.5_0003855g0030 Nicotiana tabacum HOM05D003685 ORTHO05D003168 8.3e-23 110.2 83 66.3
Sc11g0008680 Simmondsia chinensis HOM05D003685 ORTHO05D003168 8.3e-23 110.2 86 66.3
Ca_05785_v3 Cicer arietinum L. HOM05D003685 ORTHO05D003168 1.1e-22 109.8 83 78.3
Ca_30988_v3 Cicer arietinum L. HOM05D003685 ORTHO05D003168 1.1e-22 109.8 83 78.3
Medtr5g079470 Medicago truncatula HOM05D003685 ORTHO05D003168 1.1e-22 109.8 83 67.5
Sed0020121 Sechium edule HOM05D003685 ORTHO05D003168 1.4e-22 109.4 83 68.7
PGR042G0188 Punica granatum HOM05D003685 ORTHO05D003168 1.8e-22 109.0 83 81.9
Lalb_Chr17g0346151 Lupinus albus HOM05D003685 ORTHO05D003168 3.1e-22 108.2 83 63.9
Actinidia36369 Actinidia chinensis HOM05D003685 ORTHO05D003168 7.0e-22 107.1 86 64.0
Oeu000910.1 Olea europaea HOM05D003685 ORTHO05D003168 7.0e-22 107.1 83 65.1
Sc10g0000750 Simmondsia chinensis HOM05D003685 ORTHO05D003168 9.1e-22 106.7 84 65.5
Glyma.14G216000 Glycine max HOM05D003685 ORTHO05D003168 1.6e-21 105.9 83 84.3
Lalb_Chr15g0084851 Lupinus albus HOM05D003685 ORTHO05D003168 4.5e-21 104.4 83 63.9
Lalb_Chr18g0053371 Lupinus albus HOM05D003685 ORTHO05D003168 4.5e-21 104.4 83 63.9
Phvul.008G234700 Phaseolus vulgaris HOM05D003685 ORTHO05D003168 4.5e-21 104.4 83 84.3
Cc07_g08080 Coffea canephora HOM05D003685 ORTHO05D003168 5.9e-21 104.0 83 65.1
CsaV3_5G024070 Cucumis sativus L. HOM05D000964 ORTHO05D003168 5.9e-21 104.0 79 69.6
Hma1.2p1_0832F.1_g225520 Hydrangea macrophylla HOM05D003685 ORTHO05D003168 1.0e-20 103.2 86 61.6
Migut.L00461 Erythranthe guttata HOM05D003685 ORTHO05D003168 1.3e-20 102.8 83 72.3
Glyma.02G245901 Glycine max HOM05D003685 ORTHO05D003168 1.3e-20 102.8 83 83.1
Lalb_Chr20g0117001 Lupinus albus HOM05D003685 ORTHO05D003168 1.3e-20 102.8 83 63.9
Sed0024816 Sechium edule HOM05D003685 ORTHO05D003168 1.7e-20 102.4 86 66.3
Solyc02g091480.1 Solanum lycopersicum HOM05D003685 ORTHO05D003168 1.7e-20 102.4 83 63.9
CAN.G1061.44 Capsicum annuum HOM05D003685 ORTHO05D003168 2.2e-20 102.1 83 61.4
RcHm_v2.0_Chr3g0493401 Rosa chinensis HOM05D003685 ORTHO05D003168 2.9e-20 101.7 86 57.0
Sopen02g036100 Solanum pennellii HOM05D003685 ORTHO05D003168 5.0e-20 100.9 83 62.7
PGSC0003DMG400030652 Solanum tuberosum HOM05D003685 ORTHO05D003168 5.0e-20 100.9 83 62.7
Rhsim08G0086900 Rhododendron simsii HOM05D003685 ORTHO05D003168 1.1e-19 99.8 86 61.6
MD09G1262700 Malus domestica HOM05D003685 ORTHO05D003168 4.2e-19 97.8 86 55.8
Cpa.g.sc116.33 Carica papaya HOM05D003685 ORTHO05D003168 5.5e-19 97.4 86 59.3
FvH4_1g28900 Fragaria vesca HOM05D003685 ORTHO05D003168 5.5e-19 97.4 86 54.7
FAN19G1718 Fragaria x ananassa HOM05D003685 ORTHO05D003168 5.5e-19 97.4 86 54.7
MD17G1257600 Malus domestica HOM05D003685 ORTHO05D003168 5.5e-19 97.4 86 58.1
Peaxi162Scf00911g00004 Petunia axillaris HOM05D003685 ORTHO05D003168 5.5e-19 97.4 81 60.5
Manes.01G116500 Manihot esculenta HOM05D003685 ORTHO05D003168 7.2e-19 97.1 83 59.0
vmacro22373 Vaccinium macrocarpon HOM05D014992 ORTHO05D003168 7.2e-19 97.1 86 60.5
vmacro22897 Vaccinium macrocarpon HOM05D003685 ORTHO05D003168 7.2e-19 97.1 86 60.5
Manes.17G064700 Manihot esculenta HOM05D003685 ORTHO05D003168 9.4e-19 96.7 83 59.0
Nn3g18248 Nelumbo nucifera HOM05D003685 ORTHO05D003168 1.2e-18 96.3 86 60.5
unitig_37.g12380 Utricularia gibba HOM05D000408 ORTHO05D000655 1.6e-18 95.9 83 57.8
Cfa002094 Carpinus fangiana HOM05D003685 ORTHO05D003168 3.6e-18 94.7 86 67.4
FAN23G1531 Fragaria x ananassa HOM05D003685 ORTHO05D003168 4.7e-18 94.4 86 53.5
Thecc.04G119100 Theobroma cacao HOM05D003685 ORTHO05D003168 4.7e-18 94.4 86 59.3
Gohir.A11G160900 Gossypium hirsutum HOM05D003685 ORTHO05D003168 8.0e-18 93.6 82 59.8
Gohir.D11G167200 Gossypium hirsutum HOM05D003685 ORTHO05D003168 8.0e-18 93.6 82 59.8
Gorai.007G178300 Gossypium raimondii HOM05D003685 ORTHO05D003168 8.0e-18 93.6 82 59.8
Duzib211G0337 Durio zibethinus HOM05D003685 ORTHO05D003168 1.4e-17 92.8 82 57.3
COL.COLO4_15735 Corchorus olitorius HOM05D003685 ORTHO05D003168 1.8e-17 92.4 86 58.1
DCAR_025870 Daucus carota HOM05D003685 ORTHO05D003168 1.8e-17 92.4 82 69.5
AL6G28560 Arabidopsis lyrata HOM05D003685 ORTHO05D003168 2.3e-17 92.0 82 58.5
Prupe.3G160400 Prunus persica HOM05D003685 ORTHO05D003168 3.0e-17 91.7 86 54.7
TWI53G1623 Tripterygium wilfordii HOM05D003685 ORTHO05D003168 3.0e-17 91.7 82 57.3
TWI74G1588 Tripterygium wilfordii HOM05D003685 ORTHO05D003168 4.0e-17 91.3 82 57.3
Haze_16359 Corylus avellana HOM05D003685 ORTHO05D003168 5.2e-17 90.9 81 59.3
Carub.0006s1571 Capsella rubella HOM05D003685 ORTHO05D003168 6.8e-17 90.5 82 57.3
HanXRQChr12g0375651 Helianthus annuus HOM05D003685 ORTHO05D003168 8.8e-17 90.1 82 56.1
Peaxi162Scf02113g00006 Petunia axillaris HOM05D003685 ORTHO05D003168 8.8e-17 90.1 72 65.3
TWI77G0488 Tripterygium wilfordii HOM05D003685 ORTHO05D003168 1.5e-16 89.4 82 73.2
AT5G17480 Arabidopsis thaliana HOM05D003685 ORTHO05D003168 2.0e-16 89.0 82 57.3
BolC1t05831H Brassica oleracea HOM05D003685 ORTHO05D003168 2.0e-16 89.0 82 69.5
THA.LOC104820836 Tarenaya hassleriana HOM05D003685 ORTHO05D003168 2.0e-16 89.0 82 56.1
A03p33270 Brassica napus HOM05D003685 ORTHO05D003168 2.6e-16 88.6 82 65.9
CARHR195720 Cardamine hirsuta HOM05D003685 ORTHO05D003168 2.6e-16 88.6 82 56.1
Thhalv10015161m.g Eutrema salsugineum HOM05D003685 ORTHO05D003168 2.6e-16 88.6 82 57.3
BcaC01g04402 Brassica carinata HOM05D003685 ORTHO05D003168 3.4e-16 88.2 82 67.1
BcaC01g04406 Brassica carinata HOM05D003685 ORTHO05D003168 3.4e-16 88.2 82 67.1
C03p40520 Brassica napus HOM05D003685 ORTHO05D003168 3.4e-16 88.2 82 67.1
BolC3t16317H Brassica oleracea HOM05D003685 ORTHO05D003168 3.4e-16 88.2 82 67.1
BraA03t12499Z Brassica rapa HOM05D003685 ORTHO05D003168 3.4e-16 88.2 82 67.1
Nitab4.5_0009638g0020 Nicotiana tabacum HOM05D003685 ORTHO05D003168 3.4e-16 88.2 75 61.3
QL11p003870 Quercus lobata HOM05D003685 ORTHO05D003168 3.4e-16 88.2 82 58.5
Sp3g02430 Schrenkiella parvula HOM05D003685 ORTHO05D003168 3.4e-16 88.2 82 58.5
Sp6g26740 Schrenkiella parvula HOM05D003685 ORTHO05D003168 3.4e-16 88.2 82 57.3
BcaB04g19369 Brassica carinata HOM05D003685 ORTHO05D003168 4.4e-16 87.8 82 61.0
Manes.13G093900 Manihot esculenta HOM05D003685 ORTHO05D003168 4.4e-16 87.8 81 51.9
BcaC09g47746 Brassica carinata HOM05D003685 ORTHO05D003168 5.7e-16 87.4 82 70.7
ECA246G1160 Erigeron canadensis HOM05D003685 ORTHO05D003168 5.7e-16 87.4 86 52.3
Aa31LG5G13930 Aethionema arabicum HOM05D003685 ORTHO05D003168 9.8e-16 86.7 82 57.3
AL3G13100 Arabidopsis lyrata HOM05D003685 ORTHO05D003168 9.8e-16 86.7 82 57.3
CARHR077450 Cardamine hirsuta HOM05D003685 ORTHO05D003168 9.8e-16 86.7 82 53.7
Lsat_1_v5_gn_3_81860 Lactuca sativa HOM05D003685 ORTHO05D003168 9.8e-16 86.7 86 55.8
Atru.chr1.1843 Acer truncatum HOM05D003685 ORTHO05D003168 1.3e-15 86.3 83 54.2
BcaC05g30536 Brassica carinata HOM05D003685 ORTHO05D003168 1.3e-15 86.3 82 52.4
A05p43820 Brassica napus HOM05D003685 ORTHO05D003168 1.3e-15 86.3 82 52.4
C05p63400 Brassica napus HOM05D003685 ORTHO05D003168 1.3e-15 86.3 82 52.4
BolC5t35004H Brassica oleracea HOM05D003685 ORTHO05D003168 1.3e-15 86.3 82 52.4
BraA05t23119Z Brassica rapa HOM05D003685 ORTHO05D003168 1.3e-15 86.3 82 52.4
CiPaw.04G046300 Carya illinoinensis HOM05D003685 ORTHO05D003168 1.3e-15 86.3 85 54.1
AT3G03430 Arabidopsis thaliana HOM05D003685 ORTHO05D003168 1.7e-15 85.9 82 53.7
Ciclev10013229m.g Citrus clementina HOM05D003685 ORTHO05D003168 1.7e-15 85.9 83 53.0
HanXRQChr14g0440341 Helianthus annuus HOM05D003685 ORTHO05D003168 1.7e-15 85.9 82 65.9
HanXRQChr15g0475431 Helianthus annuus HOM05D003685 ORTHO05D003168 1.7e-15 85.9 86 54.7
BcaC03g13523 Brassica carinata HOM05D003685 ORTHO05D003168 2.2e-15 85.5 77 74.0
A02p04230 Brassica napus HOM05D003685 ORTHO05D003168 2.2e-15 85.5 77 74.0
C02p09110 Brassica napus HOM05D003685 ORTHO05D003168 2.2e-15 85.5 77 74.0
BolC2t06822H Brassica oleracea HOM05D003685 ORTHO05D003168 2.2e-15 85.5 77 74.0
BraA02t05386Z Brassica rapa HOM05D003685 ORTHO05D003168 2.2e-15 85.5 77 74.0
Nitab4.5_0002664g0060 Nicotiana tabacum HOM05D003685 ORTHO05D003168 2.2e-15 85.5 72 62.5
PGR004G0993 Punica granatum HOM05D003685 ORTHO05D003168 2.8e-15 85.1 81 54.3
ECA238G1186 Erigeron canadensis HOM05D003685 ORTHO05D003168 3.7e-15 84.7 86 67.4
CiPaw.03G069700 Carya illinoinensis HOM05D003685 ORTHO05D003168 6.3e-15 84.0 83 51.8
Gohir.A07G077100 Gossypium hirsutum HOM05D003685 ORTHO05D003168 8.3e-15 83.6 82 53.7
Gorai.001G086900 Gossypium raimondii HOM05D003685 ORTHO05D003168 8.3e-15 83.6 82 53.7
BraA01t04580Z Brassica rapa HOM05D003685 ORTHO05D003168 2.4e-14 82.0 82 68.3
Lsat_1_v5_gn_2_79940 Lactuca sativa HOM05D003685 ORTHO05D003168 2.4e-14 82.0 83 55.4
Gohir.D07G081800 Gossypium hirsutum HOM05D003685 ORTHO05D003168 4.1e-14 81.3 82 52.4
Duzib133G0562 Durio zibethinus HOM05D003685 ORTHO05D003168 7.0e-14 80.5 77 71.4
MBI04_g34112_MAGBIO Magnolia biondii HOM05D003685 ORTHO05D003168 7.0e-14 80.5 77 48.1
Potri.004G089200 Populus trichocarpa HOM05D003685 ORTHO05D003168 2.7e-13 78.6 86 66.3
Dinv14887 Davidia involucrata HOM05D000559 ORTHO05D000596 7.7e-13 77.0 66 57.6
BcaC05g30270 Brassica carinata HOM05D003685 ORTHO05D003168 1.0e-12 76.6 82 50.0
Potri.017G126400 Populus trichocarpa HOM05D003685 ORTHO05D003168 1.3e-12 76.3 86 66.3
BraA10t44250Z Brassica rapa HOM05D003685 ORTHO05D003168 1.7e-12 75.9 82 51.2
MBI12_g30397_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D003168 2.3e-12 75.5 79 50.6
HanXRQChr07g0193541 Helianthus annuus HOM05D003685 ORTHO05D003168 2.9e-12 75.1 86 62.8
HPP92_003364 Vanilla planifolia HOM05D003685 ORTHO05D003168 3.8e-12 74.7 76 48.7
Zm00001eb175870 Zea mays HOM05D003685 ORTHO05D003168 8.6e-12 73.6 77 63.6
Zm00001eb039230 Zea mays HOM05D003685 ORTHO05D003168 1.9e-11 72.4 76 63.2
Lsat_1_v5_gn_4_156660 Lactuca sativa HOM05D003685 ORTHO05D003168 3.3e-11 71.6 86 45.3
Aqoxy3G00097 Aquilegia oxysepala HOM05D003685 ORTHO05D003168 4.2e-11 71.2 86 61.6
PSO017G5026 Papaver somniferum HOM05D003685 ORTHO05D003168 4.2e-11 71.2 79 67.1
PSO478G3570 Papaver somniferum HOM05D003685 ORTHO05D003168 4.2e-11 71.2 79 67.1
TAR629G2979 Trochodendron aralioides HOM05D003685 ORTHO05D003168 4.2e-11 71.2 83 62.7
QL03p039371 Quercus lobata HOM05D003685 ORTHO05D003168 2.1e-10 68.9 80 60.0
Sabra17G0106100 Salix brachista HOM05D003685 ORTHO05D003168 2.8e-10 68.6 80 63.8
HPP92_005033 Vanilla planifolia HOM05D003685 ORTHO05D003168 2.8e-10 68.6 74 63.5
HanXRQChr16g0530831 Helianthus annuus HOM05D003685 ORTHO05D003168 1.8e-09 65.9 78 62.8
Os08g0560700 Oryza sativa ssp. japonica HOM05D003685 ORTHO05D003168 1.8e-09 65.9 77 59.7
MD05G1258400 Malus domestica HOM05D003685 ORTHO05D003168 2.3e-09 65.5 83 44.6
ClCG08G003720 Citrullus lanatus HOM05D003685 ORTHO05D003168 1.2e-08 63.2 71 47.9
MELO3C030156.2 Cucumis melo HOM05D003685 ORTHO05D003168 1.5e-08 62.8 83 45.8
FvH4_3g11850 Fragaria vesca HOM05D003685 ORTHO05D003168 1.3e-07 59.7 80 43.8
arahy.Tifrunner.gnm1.ann1.3WH4I0 Arachis hypogaea HOM05D000001 ORTHO05D009971 1.7e-07 59.3 75 42.7
arahy.Tifrunner.gnm1.ann1.YU644E Arachis hypogaea HOM05D000001 ORTHO05D009971 1.7e-07 59.3 75 42.7
Lalb_Chr12g0209331 Lupinus albus HOM05D003685 ORTHO05D003168 2.2e-07 58.9 76 40.8
RcHm_v2.0_Chr5g0019281 Rosa chinensis HOM05D003685 ORTHO05D003168 2.2e-07 58.9 80 40.0
CsaV3_6G003680 Cucumis sativus L. HOM05D003685 ORTHO05D003168 2.8e-07 58.5 80 45.0
Lalb_Chr07g0187881 Lupinus albus HOM05D003685 ORTHO05D003168 3.7e-07 58.2 74 41.9
Ah.16g101220 Amaranthus hybridus HOM05D000135 ORTHO05D000203 4.9e-07 57.8 77 42.9
Lj4g0014778 Lotus japonicus HOM05D003685 ORTHO05D003168 4.9e-07 57.8 76 40.8
ClCG05G011030 Citrullus lanatus HOM05D003685 ORTHO05D003168 6.3e-07 57.4 83 59.0
PSO017G3116 Papaver somniferum HOM05D000135 ORTHO05D000203 8.3e-07 57.0 67 44.8
Nn3g18256 Nelumbo nucifera HOM05D000135 ORTHO05D000203 1.1e-06 56.6 69 43.5
Nn4g24200 Nelumbo nucifera HOM05D003685 ORTHO05D003168 1.1e-06 56.6 77 59.7
Nitab4.5_0009467g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000203 1.1e-06 56.6 69 43.5
Nitab4.5_0011970g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000203 1.1e-06 56.6 69 43.5
Lsat_1_v5_gn_4_156941 Lactuca sativa HOM05D000135 ORTHO05D000203 1.4e-06 56.2 72 43.1
Lj4g0022454 Lotus japonicus HOM05D003685 ORTHO05D003168 1.4e-06 56.2 76 40.8
PSO478G4477 Papaver somniferum HOM05D000135 ORTHO05D000203 1.8e-06 55.8 65 44.6
Sabra04G0059800 Salix brachista HOM05D003685 ORTHO05D003168 1.8e-06 55.8 46 63.0
Sed0006736 Sechium edule HOM05D003685 ORTHO05D003168 1.8e-06 55.8 83 47.0
Cc04_g06360 Coffea canephora HOM05D000135 ORTHO05D000203 4.1e-06 54.7 69 46.4
PGSC0003DMG400005745 Solanum tuberosum HOM05D000135 ORTHO05D000203 7.0e-06 53.9 75 38.7
A10p21910 Brassica napus HOM05D003685 ORTHO05D003168 9.2e-06 53.5 47 57.4
CSS0018159 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 9.2e-06 53.5 61 47.5
MELO3C020277.2 Cucumis melo HOM05D003685 ORTHO05D003168 9.2e-06 53.5 83 56.6
HanXRQChr01g0013261 Helianthus annuus HOM05D000135 ORTHO05D000203 9.2e-06 53.5 77 40.3
Peaxi162Scf00207g00006 Petunia axillaris HOM05D000135 ORTHO05D000203 9.2e-06 53.5 67 43.3


User provided reference genes

Program Settings