Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1996.5 1038 100.0
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 0.0e+00 1840.9 1040 92.0
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1748.0 1034 88.0
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1743.0 1040 87.1
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 0.0e+00 1530.4 971 81.3
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1509.6 1048 76.9
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 0.0e+00 1491.9 1038 77.0
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1490.3 1036 75.9
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 0.0e+00 1481.1 1037 76.8
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1474.9 1036 74.9
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 0.0e+00 1467.6 1015 76.3
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1427.2 1048 74.0
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 0.0e+00 1296.2 1005 68.3
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 0.0e+00 1286.2 1135 62.6
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 0.0e+00 1258.4 1013 66.3
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 0.0e+00 1255.7 1013 66.3
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 0.0e+00 1240.3 1031 66.3
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1233.4 1035 64.4
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 1233.0 1038 64.2
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 0.0e+00 1231.5 1035 64.2
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1230.3 1041 64.0
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 0.0e+00 1227.2 1022 63.9
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1226.8 1035 63.3
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 0.0e+00 1225.7 1046 63.5
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 0.0e+00 1223.8 984 65.0
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 0.0e+00 1220.3 981 65.7
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 0.0e+00 1219.9 1030 63.8
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1218.0 1049 63.8
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 0.0e+00 1212.2 1032 63.0
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1209.5 1036 64.0
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 0.0e+00 1205.7 1029 63.3
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 0.0e+00 1205.7 1031 62.9
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 0.0e+00 1204.9 1019 63.2
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1194.9 1004 62.7
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 0.0e+00 1186.4 1031 61.6
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1181.4 1038 61.6
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1170.2 1036 61.7
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 0.0e+00 1167.9 1030 60.8
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 0.0e+00 1162.5 1039 60.0
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 0.0e+00 1159.8 1018 62.0
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 0.0e+00 1154.4 923 65.8
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 0.0e+00 1154.0 1047 60.5
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 0.0e+00 1147.5 1041 60.3
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1143.3 1010 61.4
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 0.0e+00 1139.8 1031 58.8
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 0.0e+00 1139.8 1041 59.6
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 0.0e+00 1136.3 1036 59.2
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1135.2 1032 59.5
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 0.0e+00 1135.2 1002 60.4
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 0.0e+00 1134.8 1007 60.4
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1134.0 1049 60.8
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1132.1 1032 59.4
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 0.0e+00 1131.7 1034 58.9
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 0.0e+00 1126.3 1005 59.6
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 0.0e+00 1126.3 1035 59.9
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 0.0e+00 1124.4 1034 60.3
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 0.0e+00 1120.9 1043 58.3
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 0.0e+00 1119.8 959 62.8
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 0.0e+00 1119.0 1039 58.1
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 0.0e+00 1111.3 1050 58.0
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 0.0e+00 1109.4 1052 58.5
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 0.0e+00 1104.0 1032 58.3
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 0.0e+00 1095.5 1048 57.7
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1088.6 1032 57.9
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 0.0e+00 1087.0 1049 57.5
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 0.0e+00 1086.6 1039 57.8
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 0.0e+00 1086.2 1039 58.2
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 0.0e+00 1083.6 1041 56.8
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 0.0e+00 1083.6 1065 55.8
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1080.5 1031 57.7
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 0.0e+00 1080.1 1052 56.6
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 0.0e+00 1078.5 1046 57.0
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 0.0e+00 1078.5 1046 57.0
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 1.8e-310 1069.3 1029 58.1
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 4.1e-310 1068.1 1032 56.7
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 4.5e-309 1064.7 1047 56.3
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 1.0e-308 1063.5 1055 56.2
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 1.7e-308 1062.8 1047 56.2
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 4.3e-307 1058.1 1058 55.6
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 6.1e-306 1054.3 1071 55.1
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 2.5e-299 1032.3 1041 57.1
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 3.7e-295 1018.5 1048 52.9
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 1.8e-289 999.6 1031 54.4
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 4.9e-287 991.5 1036 52.8
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 7.6e-272 941.0 753 65.2
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 6.0e-269 931.4 924 55.6
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 2.3e-268 929.5 748 64.8
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 2.1e-266 922.9 733 66.4
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 1.4e-265 920.2 839 58.2
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 2.4e-265 919.5 748 64.7
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 5.3e-265 918.3 1149 47.8
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 2.5e-259 899.4 564 81.0
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 7.6e-256 887.9 742 63.1
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 1.1e-254 884.0 1025 51.1
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 2.8e-250 869.4 1046 50.3
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 4.8e-250 868.6 773 60.2
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 1.0e-220 771.2 998 46.6
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 8.8e-220 768.1 638 60.8
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 8.3e-210 734.9 555 70.8
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 1.6e-192 677.6 666 55.3
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 6.0e-184 649.0 1048 39.5
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 3.0e-183 646.7 614 57.2
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 1.6e-165 587.8 893 41.3
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 1.5e-163 581.3 712 46.3
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 2.8e-157 560.5 921 38.1
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.0e-151 542.0 428 63.3
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 4.5e-147 526.6 989 37.1
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 3.2e-145 520.4 666 47.1
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 3.7e-93 347.4 801 35.3
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 1.8e-92 345.1 258 72.5
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 7.0e-92 343.2 248 71.8
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 1.0e-90 339.3 273 67.4
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 2.3e-87 328.2 318 55.0
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 6.8e-79 300.1 386 45.9
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 5.9e-75 287.0 774 30.0
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 1.3e-74 285.8 353 43.3
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-72 278.1 421 39.9
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 2.8e-72 278.1 243 64.6
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 4.7e-72 277.3 203 70.4
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 1.7e-69 268.9 204 67.6
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 8.1e-64 250.0 238 60.9
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 6.6e-58 230.3 840 27.4
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 1.5e-57 229.2 299 46.5
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 2.3e-42 178.7 134 71.6
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 1.3e-40 172.9 283 43.1
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 2.9e-37 161.8 108 74.1
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 4.6e-27 127.9 86 76.7
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 2.8e-24 118.6 76 81.6
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 6.7e-18 97.4 68 76.5
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 4.3e-17 94.7 68 73.5
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 2.6e-14 85.5 63 58.7
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 2.6e-14 85.5 70 58.6
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 4.2e-12 78.2 52 84.6
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 1.2e-11 76.6 549 22.0
Sabra17G0109200 Salix brachista HOM05D005365 ORTHO05D349400 8.7e-10 70.5 90 50.0
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 2.8e-08 65.5 46 73.9
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 7.7e-06 57.4 73 46.6


User provided reference genes

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