Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G221000 Phaseolus vulgaris HOM05D008155 ORTHO05D010411 2.2e-79 298.9 149 100.0
VMungo1383G2435 Vigna mungo HOM05D008155 ORTHO05D010411 5.2e-65 251.1 149 85.2
Glyma.19G224100 Glycine max HOM05D008155 ORTHO05D010411 3.7e-47 191.8 155 70.3
Glyma.03G227200 Glycine max HOM05D008155 ORTHO05D010411 2.4e-46 189.1 154 70.8
Medtr7g111230 Medicago truncatula HOM05D008155 ORTHO05D010411 7.6e-24 114.4 170 43.5
TPR.G35721 Trifolium pratense HOM05D008155 ORTHO05D010411 1.9e-22 109.8 170 42.4
arahy.Tifrunner.gnm1.ann1.QRZ24D Arachis hypogaea HOM05D008155 ORTHO05D010411 9.6e-19 97.4 122 49.2
Cfa004403 Carpinus fangiana HOM05D008155 ORTHO05D010411 8.1e-18 94.4 140 44.3
Haze_15003 Corylus avellana HOM05D008155 ORTHO05D010411 1.5e-16 90.1 140 43.6
QL03p011396 Quercus lobata HOM05D008155 ORTHO05D010411 1.7e-15 86.7 130 40.8
Prupe.6G302400 Prunus persica HOM05D008155 ORTHO05D010411 4.9e-15 85.1 124 44.4
RcHm_v2.0_Chr3g0459031 Rosa chinensis HOM05D008155 ORTHO05D010411 6.4e-15 84.7 122 41.8
Ciclev10029557m.g Citrus clementina HOM05D008155 ORTHO05D010411 1.1e-14 84.0 124 41.9
CSS0011875 Camellia sinensis var. sinensis HOM05D008155 ORTHO05D010411 7.1e-14 81.3 147 38.1
TWI56G0796 Tripterygium wilfordii HOM05D008155 ORTHO05D010411 2.1e-13 79.7 140 44.3
Migut.N00987 Erythranthe guttata HOM05D008155 ORTHO05D010411 3.5e-13 79.0 95 50.5
Solyc01g102460.4 Solanum lycopersicum HOM05D008155 ORTHO05D010411 3.5e-13 79.0 148 38.5
Sopen01g044900 Solanum pennellii HOM05D008155 ORTHO05D010411 3.5e-13 79.0 148 38.5
Hma1.2p1_0157F.1_g069510 Hydrangea macrophylla HOM05D008155 ORTHO05D010411 1.0e-12 77.4 127 40.2
Manes.09G182600 Manihot esculenta HOM05D008155 ORTHO05D010411 1.8e-12 76.6 136 37.5
MD12G1197100 Malus domestica HOM05D008155 ORTHO05D010411 2.3e-12 76.3 130 39.2
Manes.08G106200 Manihot esculenta HOM05D008155 ORTHO05D010411 2.3e-12 76.3 98 44.9
Gorai.013G241100 Gossypium raimondii HOM05D008155 ORTHO05D010411 3.0e-12 75.9 47 66.0
CANSAT54G1408 Cannabis sativa HOM05D008155 ORTHO05D010411 8.7e-12 74.3 123 39.0
Gohir.A13G206400 Gossypium hirsutum HOM05D008155 ORTHO05D010411 8.7e-12 74.3 47 63.8
CSS0018964 Camellia sinensis var. sinensis HOM05D008155 ORTHO05D010411 1.9e-11 73.2 54 57.4
MD04G1183800 Malus domestica HOM05D008155 ORTHO05D010411 2.5e-11 72.8 104 37.5
FAN14G4286 Fragaria x ananassa HOM05D008155 ORTHO05D010411 3.3e-11 72.4 120 39.2
FAN02G1576 Fragaria x ananassa HOM05D008155 ORTHO05D010411 4.3e-11 72.0 120 39.2
SalBow8G5556 Salvia bowleyana HOM05D008155 ORTHO05D010411 5.6e-11 71.6 61 54.1
PGSC0003DMG400018233 Solanum tuberosum HOM05D008155 ORTHO05D010411 5.6e-11 71.6 51 58.8
Atru.chr12.1507 Acer truncatum HOM05D008155 ORTHO05D010411 7.4e-11 71.2 53 56.6
MSTRG.5176 Avicennia marina HOM05D008155 ORTHO05D010411 9.6e-11 70.9 137 38.0
MELO3C004141.2 Cucumis melo HOM05D008155 ORTHO05D010411 9.6e-11 70.9 131 38.2
SalBow4G1718 Salvia bowleyana HOM05D008155 ORTHO05D010411 2.8e-10 69.3 139 38.1
SalBow4G2153 Salvia bowleyana HOM05D008155 ORTHO05D010411 2.8e-10 69.3 139 38.1
Thecc.05G331400 Theobroma cacao HOM05D008155 ORTHO05D010411 2.8e-10 69.3 99 42.4
Atru.chr12.1502 Acer truncatum HOM05D008155 ORTHO05D010411 3.7e-10 68.9 53 54.7
Sed0023159 Sechium edule HOM05D008155 ORTHO05D010411 4.8e-10 68.6 134 37.3
vmacro19804 Vaccinium macrocarpon HOM05D003050 ORTHO05D003513 2.4e-09 66.2 137 39.4
CsaV3_2G007430 Cucumis sativus L. HOM05D008155 ORTHO05D010411 5.3e-09 65.1 150 34.7
THA.LOC104802769 Tarenaya hassleriana HOM05D008255 ORTHO05D011943 5.3e-09 65.1 84 46.4
TAR365G0599 Trochodendron aralioides HOM05D008155 ORTHO05D010411 9.0e-09 64.3 52 48.1
Aqoxy7G02124 Aquilegia oxysepala HOM05D008155 ORTHO05D010411 1.5e-08 63.5 48 54.2
Cpa.g.sc48.233 Carica papaya HOM05D008155 ORTHO05D010411 1.5e-08 63.5 132 34.8
TAR362G0658 Trochodendron aralioides HOM05D008155 ORTHO05D010411 1.5e-08 63.5 52 48.1
DCAR_022333 Daucus carota HOM05D008155 ORTHO05D010411 2.0e-08 63.2 54 51.9
ClCG02G014570 Citrullus lanatus HOM05D008155 ORTHO05D010411 4.5e-08 62.0 133 36.1
Nitab4.5_0006193g0010 Nicotiana tabacum HOM05D008155 ORTHO05D010411 7.6e-08 61.2 40 65.0
Aa31LG11G10020 Aethionema arabicum HOM05D008255 ORTHO05D011943 1.3e-07 60.5 89 41.6
Oeu034763.2 Olea europaea HOM05D008155 ORTHO05D010411 1.3e-07 60.5 127 31.5
Potri.005G001100 Populus trichocarpa HOM05D008155 ORTHO05D010411 1.3e-07 60.5 52 50.0
Potri.013G000200 Populus trichocarpa HOM05D008155 ORTHO05D010411 1.3e-07 60.5 52 51.9
Rhsim11G0107200 Rhododendron simsii HOM05D008155 ORTHO05D010411 1.7e-07 60.1 55 52.7
Sed0026568 Sechium edule HOM05D008155 ORTHO05D010411 4.9e-07 58.5 133 34.6
SHI18006 Sapria himalayana HOM05D008155 ORTHO05D010411 6.4e-07 58.2 62 51.6
Lsat_1_v5_gn_1_75801 Lactuca sativa HOM05D008155 ORTHO05D010411 1.4e-06 57.0 57 47.4
Sp2g21360 Schrenkiella parvula HOM05D008255 ORTHO05D011943 2.4e-06 56.2 55 50.9
BcaNung03958 Brassica carinata HOM05D008255 ORTHO05D011943 5.5e-06 55.1 61 49.2
COL.COLO4_05473 Corchorus olitorius HOM05D008155 ORTHO05D010411 7.1e-06 54.7 150 33.3
Thhalv10005106m.g Eutrema salsugineum HOM05D008255 ORTHO05D011943 7.1e-06 54.7 125 34.4
unitig_699.g19831 Utricularia gibba HOM05D008155 ORTHO05D010411 7.1e-06 54.7 132 33.3
Lsat_1_v5_gn_5_146861 Lactuca sativa HOM05D008155 ORTHO05D010411 9.3e-06 54.3 131 32.8


User provided reference genes

Program Settings