Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G205800 Phaseolus vulgaris HOM05D001496 ORTHO05D007453 1.7e-227 792.3 410 100.0
Glyma.03G213200 Glycine max HOM05D001496 ORTHO05D007453 1.7e-198 696.0 402 89.3
Glyma.19G210000 Glycine max HOM05D001496 ORTHO05D007453 1.7e-198 696.0 403 88.3
Psat3g022520 Pisum sativum HOM05D001496 ORTHO05D007453 4.6e-188 661.4 403 84.6
TPR.G9626 Trifolium pratense HOM05D001496 ORTHO05D007453 2.1e-185 652.5 403 83.4
Lj1g0019023 Lotus japonicus HOM05D001496 ORTHO05D007453 3.6e-185 651.7 403 83.4
arahy.Tifrunner.gnm1.ann1.D4F8D3 Arachis hypogaea HOM05D001496 ORTHO05D007453 1.4e-184 649.8 403 83.6
Ca_09147_v3 Cicer arietinum L. HOM05D001496 ORTHO05D007453 1.4e-184 649.8 403 84.6
arahy.Tifrunner.gnm1.ann1.RVL32D Arachis hypogaea HOM05D001496 ORTHO05D007453 1.2e-183 646.7 403 83.4
Medtr7g108620 Medicago truncatula HOM05D001496 ORTHO05D007453 2.6e-183 645.6 403 82.9
Lalb_Chr04g0259811 Lupinus albus HOM05D001496 ORTHO05D007453 5.1e-179 631.3 404 80.4
Atru.chr5.1181 Acer truncatum HOM05D001496 ORTHO05D007453 5.1e-155 551.6 380 74.7
Lalb_Chr04g0259801 Lupinus albus HOM05D001496 ORTHO05D007453 6.7e-155 551.2 410 71.5
Dinv19717 Davidia involucrata HOM05D001496 ORTHO05D007453 1.6e-153 546.6 393 72.3
Rhsim13G0012500 Rhododendron simsii HOM05D001496 ORTHO05D007453 2.8e-153 545.8 364 75.5
Actinidia24335 Actinidia chinensis HOM05D001496 ORTHO05D007453 3.7e-153 545.4 387 72.6
Haze_04897 Corylus avellana HOM05D001496 ORTHO05D007453 1.1e-152 543.9 385 72.7
Cfa005950 Carpinus fangiana HOM05D001496 ORTHO05D007453 3.1e-152 542.3 393 71.0
GSVIVG01027976001 Vitis vinifera HOM05D001496 ORTHO05D007453 1.2e-151 540.4 392 70.9
vmacro02468 Vaccinium macrocarpon HOM05D001496 ORTHO05D007453 3.4e-151 538.9 364 75.0
CSS0045492 Camellia sinensis var. sinensis HOM05D001496 ORTHO05D007453 7.6e-151 537.7 394 70.3
Manes.05G064100 Manihot esculenta HOM05D001496 ORTHO05D007453 2.2e-150 536.2 387 72.6
Sabra14G0097800 Salix brachista HOM05D001496 ORTHO05D007453 8.4e-150 534.3 380 71.8
Thecc.01G297200 Theobroma cacao HOM05D001496 ORTHO05D007453 8.4e-150 534.3 372 74.5
HanXRQChr12g0382731 Helianthus annuus HOM05D001496 ORTHO05D007453 1.9e-149 533.1 383 71.0
Eucgr.H01160 Eucalyptus grandis HOM05D001496 ORTHO05D007453 2.5e-149 532.7 369 72.4
AL4G47330 Arabidopsis lyrata HOM05D001496 ORTHO05D007453 3.2e-149 532.3 400 69.2
Potri.014G131600 Populus trichocarpa HOM05D001496 ORTHO05D007453 1.2e-148 530.4 380 71.3
Migut.D00196 Erythranthe guttata HOM05D001496 ORTHO05D007453 1.6e-148 530.0 364 73.1
CANSAT25G1124 Cannabis sativa HOM05D001496 ORTHO05D007453 2.7e-148 529.3 372 71.5
SalBow3G1333 Salvia bowleyana HOM05D001496 ORTHO05D007453 3.5e-148 528.9 371 70.6
MELO3C016018.2 Cucumis melo HOM05D001496 ORTHO05D007453 4.6e-148 528.5 380 72.1
Ciclev10020260m.g Citrus clementina HOM05D001496 ORTHO05D007453 1.0e-147 527.3 372 72.0
FAN24G2787 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.0e-147 527.3 365 73.7
Aa31LG1G29100 Aethionema arabicum HOM05D001496 ORTHO05D007453 1.3e-147 526.9 387 70.5
TWI14G0104 Tripterygium wilfordii HOM05D001496 ORTHO05D007453 1.8e-147 526.6 393 69.0
Aqoxy2G02984 Aquilegia oxysepala HOM05D001496 ORTHO05D007453 3.9e-147 525.4 379 70.7
CsaV3_7G029100 Cucumis sativus L. HOM05D001496 ORTHO05D007453 3.9e-147 525.4 380 71.3
FAN15G3342 Fragaria x ananassa HOM05D001496 ORTHO05D007453 3.9e-147 525.4 365 73.4
Cpa.g.sc9.209 Carica papaya HOM05D001496 ORTHO05D007453 5.1e-147 525.0 364 73.6
Lj2C1190T13 Lonicera japonica HOM05D001496 ORTHO05D007453 6.7e-147 524.6 393 69.0
MD11G1304600 Malus domestica HOM05D001496 ORTHO05D007453 1.9e-146 523.1 398 67.1
Sc10g0000910 Simmondsia chinensis HOM05D001496 ORTHO05D007453 3.3e-146 522.3 358 75.7
Duzib133G1333 Durio zibethinus HOM05D001496 ORTHO05D007453 4.3e-146 521.9 372 72.8
Sopen09g029720 Solanum pennellii HOM05D001496 ORTHO05D007453 4.3e-146 521.9 364 71.7
Solyc09g074900.4 Solanum lycopersicum HOM05D001496 ORTHO05D007453 7.4e-146 521.2 364 72.0
CAN.G339.32 Capsicum annuum HOM05D001496 ORTHO05D007453 9.7e-146 520.8 364 72.0
Nitab4.5_0005474g0020 Nicotiana tabacum HOM05D001496 ORTHO05D007453 9.7e-146 520.8 364 71.7
PGSC0003DMG400011393 Solanum tuberosum HOM05D001496 ORTHO05D007453 1.6e-145 520.0 364 72.0
Cc01_g20650 Coffea canephora HOM05D001496 ORTHO05D007453 2.8e-145 519.2 385 70.6
Prupe.8G258400 Prunus persica HOM05D001496 ORTHO05D007453 2.8e-145 519.2 389 69.9
THA.LOC104802172 Tarenaya hassleriana HOM05D001496 ORTHO05D007453 6.3e-145 518.1 381 70.9
PSO170G1216 Papaver somniferum HOM05D001496 ORTHO05D007453 8.2e-145 517.7 390 68.7
COL.COLO4_23374 Corchorus olitorius HOM05D001496 ORTHO05D007453 1.8e-144 516.5 376 72.9
ClCG09G006040 Citrullus lanatus HOM05D001496 ORTHO05D007453 2.4e-144 516.2 393 68.2
AT2G47760 Arabidopsis thaliana HOM05D001496 ORTHO05D007453 3.1e-144 515.8 379 68.9
RcHm_v2.0_Chr6g0293561 Rosa chinensis HOM05D001496 ORTHO05D007453 3.1e-144 515.8 365 72.3
TAR365G0358 Trochodendron aralioides HOM05D001496 ORTHO05D007453 2.6e-143 512.7 375 70.9
Carub.0004s3047 Capsella rubella HOM05D001496 ORTHO05D007453 5.9e-143 511.5 375 71.5
QL12p027136 Quercus lobata HOM05D001496 ORTHO05D007453 5.9e-143 511.5 367 72.2
Hma1.2p1_0209F.1_g088590 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 1.0e-142 510.8 364 72.3
Thhalv10001458m.g Eutrema salsugineum HOM05D001496 ORTHO05D007453 2.9e-142 509.2 375 70.1
BcaB02g08748 Brassica carinata HOM05D001496 ORTHO05D007453 5.0e-142 508.4 380 69.5
ECA248G3024 Erigeron canadensis HOM05D001496 ORTHO05D007453 8.5e-142 507.7 348 75.0
Lsat_1_v5_gn_5_190521 Lactuca sativa HOM05D001496 ORTHO05D007453 4.2e-141 505.4 380 68.7
DCAR_002814 Daucus carota HOM05D001496 ORTHO05D007453 1.2e-140 503.8 375 69.1
Gorai.008G011100 Gossypium raimondii HOM05D001496 ORTHO05D007453 1.6e-140 503.4 363 72.5
Gohir.A12G010700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 3.6e-140 502.3 363 72.2
Gohir.D12G011100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 7.9e-140 501.1 363 72.2
Sp4g29690 Schrenkiella parvula HOM05D001496 ORTHO05D007453 7.9e-140 501.1 382 68.8
Sed0004349 Sechium edule HOM05D001496 ORTHO05D007453 8.8e-139 497.7 335 74.3
Hund16196 Selenicereus undatus HOM05D001496 ORTHO05D007453 8.8e-139 497.7 389 69.7
unitig_0.g1180 Utricularia gibba HOM05D001496 ORTHO05D007453 8.8e-139 497.7 364 68.1
Nitab4.5_0000619g0030 Nicotiana tabacum HOM05D001496 ORTHO05D007453 2.0e-138 496.5 409 63.6
CiPaw.07G106500 Carya illinoinensis HOM05D001496 ORTHO05D007453 4.3e-138 495.4 393 66.2
A05p00200 Brassica napus HOM05D001496 ORTHO05D007453 1.7e-137 493.4 404 65.3
TAR633G2480 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.4e-136 490.3 357 72.0
Oeu048346.1 Olea europaea HOM05D001496 ORTHO05D007453 1.5e-135 486.9 482 56.2
EL10Ac2g04497 Beta vulgaris HOM05D001496 ORTHO05D007453 2.0e-135 486.5 397 67.0
CDE02G4632 Ceratophyllum demersum HOM05D001496 ORTHO05D007453 5.9e-135 485.0 355 69.3
Peaxi162Scf00067g02528 Petunia axillaris HOM05D001496 ORTHO05D007453 1.0e-134 484.2 394 65.2
BcaC02g12544 Brassica carinata HOM05D001496 ORTHO05D007453 1.1e-133 480.7 369 68.3
AUR62023205 Chenopodium quinoa HOM05D001496 ORTHO05D007453 1.4e-133 480.3 402 64.9
AUR62023251 Chenopodium quinoa HOM05D001496 ORTHO05D007453 1.4e-133 480.3 402 65.2
C04p00120 Brassica napus HOM05D001496 ORTHO05D007453 9.4e-133 477.6 396 64.9
Zm00001eb122900 Zea mays HOM05D001496 ORTHO05D007453 2.1e-132 476.5 361 68.7
HPP92_016896 Vanilla planifolia HOM05D001496 ORTHO05D007453 1.4e-131 473.8 360 68.1
Nn7g38144 Nelumbo nucifera HOM05D001496 ORTHO05D007453 2.2e-126 456.4 367 65.7
PGR119G0252 Punica granatum HOM05D001496 ORTHO05D007453 4.2e-125 452.2 389 64.5
PGR119G1256 Punica granatum HOM05D001496 ORTHO05D007453 4.2e-125 452.2 389 64.5
ATR0796G343 Amborella trichopoda HOM05D001496 ORTHO05D007453 5.5e-125 451.8 337 67.1
Mapoly0077s0004 Marchantia polymorpha HOM05D001496 ORTHO05D007453 1.2e-119 434.1 362 62.4
Pp3c10_8510 Physcomitrium patens HOM05D001496 ORTHO05D007453 3.8e-118 429.1 389 58.9
BraA05t19016Z Brassica rapa HOM05D001496 ORTHO05D007453 6.3e-113 411.8 317 67.5
AagrBONN_evm.TU.Sc2ySwM_368.922 Anthoceros agrestis HOM05D001496 ORTHO05D007453 3.5e-111 406.0 359 59.1
FvH4_2g25370 Fragaria vesca HOM05D001496 ORTHO05D007453 2.6e-106 389.8 278 71.9
SMO111G0159 Selaginella moellendorffii HOM05D001496 ORTHO05D007453 4.4e-106 389.0 351 58.1
CARHR143130 Cardamine hirsuta HOM05D001496 ORTHO05D007453 1.7e-102 377.1 281 69.8
Ah.16g101380 Amaranthus hybridus HOM05D001496 ORTHO05D007453 9.5e-101 371.3 324 64.8
Hma1.2p1_0209F.1_g088600 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 9.5e-101 371.3 364 58.0
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.6e-95 354.0 257 72.0
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 1.0e-94 351.3 406 51.2
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 5.2e-91 339.0 358 53.1
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 1.2e-84 317.8 273 62.3
FAN15G0073 Fragaria x ananassa HOM05D001496 ORTHO05D007453 3.7e-81 306.2 204 77.5
MCO05G420 Micromonas commoda HOM05D001496 ORTHO05D007453 2.1e-79 300.4 345 49.3
MD03G1285200 Malus domestica HOM05D001496 ORTHO05D007453 1.5e-77 294.3 219 70.3
FAN20G0671 Fragaria x ananassa HOM05D001496 ORTHO05D007453 3.7e-73 279.6 220 67.3
PRCOL_00006487 Prasinoderma coloniale HOM05D001496 ORTHO05D007453 5.1e-70 269.2 352 46.9
MD03G1285100 Malus domestica HOM05D001496 ORTHO05D007453 2.4e-56 223.8 172 65.7
Haze_26252 Corylus avellana HOM05D001496 ORTHO05D007453 4.3e-53 213.0 351 39.0
Gohir.A05G239300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 9.9e-50 201.8 126 78.6
COL.COLO4_15168 Corchorus olitorius HOM05D001496 ORTHO05D007453 1.6e-44 184.5 120 73.3
Gohir.A01G111300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.0e-42 177.6 110 79.1
Gohir.A02G071100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 4.9e-41 172.9 110 77.3
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 6.5e-41 172.6 111 73.9
Gohir.A12G153600 Gossypium hirsutum HOM05D001496 ORTHO05D007453 9.3e-40 168.7 110 75.5
Os01g0172000 Oryza sativa ssp. japonica HOM05D001496 ORTHO05D007453 4.8e-36 156.4 103 72.8
Gohir.A07G160700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.5e-32 144.1 104 73.1
BraA03t11820Z Brassica rapa HOM05D001496 ORTHO05D007453 1.6e-31 141.4 100 70.0
A03p26050 Brassica napus HOM05D000073 ORTHO05D000033 2.7e-31 140.6 117 64.1
MBI19_g29447_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 7.2e-24 115.9 92 65.2
FAN27G2092 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.4e-22 111.7 94 57.4
MBI14_g09685_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 1.1e-21 108.6 103 58.3
SEGI_31251 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 2.2e-20 104.4 78 59.0
BolC3t15455H Brassica oleracea HOM05D001496 ORTHO05D007453 4.8e-20 103.2 121 52.9
C03p31050 Brassica napus HOM05D001496 ORTHO05D007453 4.5e-18 96.7 123 51.2
QL02p058842 Quercus lobata HOM05D001496 ORTHO05D000125 4.2e-16 90.1 49 79.6
Actinidia02729 Actinidia chinensis HOM05D001496 ORTHO05D007453 5.7e-13 79.7 238 35.3
QL02p059219 Quercus lobata HOM05D001496 ORTHO05D007453 7.4e-13 79.3 51 72.5
HanXRQChr05g0138141 Helianthus annuus HOM05D001496 ORTHO05D007453 3.1e-11 73.9 41 78.0
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 2.2e-09 67.8 41 75.6


User provided reference genes

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