Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 2.8e-225 785.0 420 100.0
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 1.8e-203 712.6 389 92.3
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 1.3e-201 706.4 424 88.2
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 2.1e-188 662.5 390 85.1
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 6.1e-188 661.0 392 83.9
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 1.4e-187 659.8 419 80.4
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 4.0e-187 658.3 391 83.1
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 5.0e-182 641.3 391 81.6
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 1.5e-178 629.8 419 78.8
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 3.9e-166 588.6 357 91.0
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 2.0e-154 549.7 398 70.9
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 6.4e-153 544.7 397 70.0
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 1.7e-150 536.6 397 70.0
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 2.3e-150 536.2 400 70.5
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.2e-148 530.4 394 70.1
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 1.6e-148 530.0 400 68.5
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 1.6e-148 530.0 401 68.1
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 1.6e-148 530.0 394 70.1
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 4.7e-148 528.5 455 63.1
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 6.2e-148 528.1 394 69.8
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 5.8e-146 521.5 398 67.6
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 8.4e-145 517.7 394 67.8
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 1.4e-144 516.9 396 67.9
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 2.4e-144 516.2 397 68.0
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 3.2e-144 515.8 398 67.6
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 2.7e-143 512.7 396 67.2
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 3.5e-143 512.3 403 66.7
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 5.1e-142 508.4 404 63.9
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 8.7e-142 507.7 296 86.5
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.5e-141 506.9 398 65.8
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 2.1e-140 503.1 395 66.6
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 2.1e-140 503.1 395 66.3
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 6.2e-140 501.5 400 66.8
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 8.1e-140 501.1 396 68.2
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 8.1e-140 501.1 396 65.4
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 3.1e-139 499.2 368 70.1
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 2.0e-138 496.5 391 65.5
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 3.4e-138 495.7 402 66.2
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 4.5e-138 495.4 398 66.1
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 2.2e-137 493.0 392 66.1
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 1.2e-135 487.3 393 64.9
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 4.6e-135 485.3 338 75.1
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 1.0e-134 484.2 454 56.6
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 1.0e-134 484.2 398 65.1
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 2.5e-133 479.6 395 64.6
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 1.3e-132 477.2 399 62.9
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 1.5e-130 470.3 391 62.9
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 3.4e-130 469.2 393 63.1
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 3.4e-130 469.2 397 62.2
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 1.3e-129 467.2 338 71.9
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 1.3e-129 467.2 401 61.3
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 2.9e-129 466.1 390 63.3
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 2.9e-129 466.1 400 61.8
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 8.4e-129 464.5 390 63.1
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 8.4e-129 464.5 390 63.1
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 1.4e-128 463.8 338 70.7
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 7.1e-128 461.5 359 66.0
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 1.2e-127 460.7 390 62.8
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 2.1e-127 459.9 394 61.2
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 7.9e-127 458.0 392 63.0
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 1.3e-126 457.2 390 62.6
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 2.3e-126 456.4 399 60.7
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 6.7e-126 454.9 392 61.5
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 6.7e-126 454.9 389 61.7
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 8.7e-126 454.5 400 60.2
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 8.7e-126 454.5 398 60.6
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 1.9e-125 453.4 393 61.8
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 8.2e-124 448.0 408 58.3
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.1e-123 447.6 385 60.5
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 1.4e-123 447.2 421 59.9
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 1.4e-123 447.2 393 60.6
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 5.3e-123 445.3 343 66.2
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 3.4e-122 442.6 393 60.3
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 3.8e-121 439.1 392 59.9
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 1.1e-120 437.6 392 59.7
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 1.1e-120 437.6 394 60.9
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 1.1e-120 437.6 394 58.4
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 1.4e-120 437.2 410 56.8
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 1.4e-120 437.2 392 59.7
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.5e-120 436.4 324 71.0
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 5.5e-120 435.3 394 58.6
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 7.1e-120 434.9 337 67.1
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 1.8e-118 430.3 430 55.3
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.1e-117 427.6 327 68.5
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 1.3e-116 424.1 336 65.5
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 1.6e-116 423.7 394 59.9
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 1.8e-115 420.2 424 55.7
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 4.5e-114 415.6 357 61.6
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 4.5e-114 415.6 387 59.2
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 7.6e-114 414.8 421 54.6
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 1.3e-113 414.1 406 57.6
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.7e-113 413.7 400 57.0
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 1.1e-112 411.0 398 56.8
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 1.1e-112 411.0 394 57.9
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 3.2e-112 409.5 374 59.4
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 3.3e-109 399.4 320 65.6
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.7e-108 397.1 395 54.9
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 3.7e-108 396.0 321 65.1
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 4.5e-106 389.0 400 54.8
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.0e-105 387.9 372 60.2
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 2.1e-103 380.2 396 54.0
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 6.7e-102 375.2 281 70.5
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.8e-100 369.0 277 69.7
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 1.4e-96 357.5 321 60.7
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 2.7e-95 353.2 283 67.1
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 1.8e-91 340.5 452 47.3
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 2.6e-90 336.7 283 63.3
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 5.9e-90 335.5 320 56.9
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.7e-81 307.4 427 44.7
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 3.4e-69 266.5 210 66.2
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 1.6e-66 257.7 207 64.7
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 2.5e-64 250.4 408 38.0
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 3.6e-63 246.5 406 38.7
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 2.9e-52 210.3 410 35.6
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 8.3e-52 208.8 127 81.9
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 2.5e-48 197.2 126 77.8
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 2.8e-47 193.7 317 40.7
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 1.3e-44 184.9 122 73.8
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 3.5e-34 150.2 103 70.9
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 1.6e-26 124.8 88 70.5
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 2.8e-23 114.0 90 66.7
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 1.5e-21 108.2 100 60.0
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.2e-20 104.4 72 72.2
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 2.2e-20 104.4 113 44.2
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 6.4e-20 102.8 80 66.2
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 1.1e-16 92.0 150 40.0
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 9.3e-11 72.4 92 41.3
CBR_g10855 Chara braunii HOM05D005892 ORTHO05D007364 1.1e-08 65.5 168 31.5


User provided reference genes

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