Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G177600 Phaseolus vulgaris HOM05D009309 ORTHO05D011491 9.5e-19 95.9 51 100.0
Glyma.19G182200 Glycine max HOM05D009309 ORTHO05D011491 1.7e-15 85.1 51 86.3
Glyma.03G181500 Glycine max HOM05D009309 ORTHO05D011491 2.9e-15 84.3 51 86.3
Lj1g0009603 Lotus japonicus HOM05D009309 ORTHO05D011491 1.9e-14 81.6 53 84.9
MBI10_g22826_MAGBIO Magnolia biondii HOM05D009309 ORTHO05D011491 4.4e-08 60.5 53 62.3
Gohir.D09G144800 Gossypium hirsutum HOM05D009309 ORTHO05D011491 5.8e-08 60.1 45 71.1
Gorai.006G166100 Gossypium raimondii HOM05D009309 ORTHO05D011491 5.8e-08 60.1 45 71.1
MD04G1096300 Malus domestica HOM05D009309 ORTHO05D011491 7.6e-08 59.7 49 67.3
Cfa017573 Carpinus fangiana HOM05D009309 ORTHO05D011491 9.9e-08 59.3 51 66.7
Manes.08G008300 Manihot esculenta HOM05D009309 ORTHO05D011491 9.9e-08 59.3 46 65.2
MD12G1117300 Malus domestica HOM05D009309 ORTHO05D011491 1.7e-07 58.5 49 61.2
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 2.2e-07 58.2 52 63.5
Dinv37295 Davidia involucrata HOM05D009309 ORTHO05D011491 3.8e-07 57.4 53 58.5
Nn2g13719 Nelumbo nucifera HOM05D009309 ORTHO05D011491 3.8e-07 57.4 52 67.3
Thecc.05G062000 Theobroma cacao HOM05D009309 ORTHO05D011491 3.8e-07 57.4 48 64.6
Potri.006G127000 Populus trichocarpa HOM05D009309 ORTHO05D011491 6.4e-07 56.6 48 62.5
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 8.4e-07 56.2 47 68.1
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 1.9e-06 55.1 50 60.0
CiPaw.09G174500 Carya illinoinensis HOM05D009309 ORTHO05D011491 1.9e-06 55.1 49 63.3
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 1.9e-06 55.1 50 64.0
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 2.4e-06 54.7 50 62.0
Migut.J00541 Erythranthe guttata HOM05D009309 ORTHO05D011491 2.4e-06 54.7 49 63.3
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 2.4e-06 54.7 47 66.0
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 2.4e-06 54.7 47 66.0
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 3.2e-06 54.3 49 63.3
Rhsim05G0179800 Rhododendron simsii HOM05D009309 ORTHO05D011491 3.2e-06 54.3 47 59.6
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 4.2e-06 53.9 50 60.0
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 4.2e-06 53.9 50 60.0
Prupe.6G235500 Prunus persica HOM05D009309 ORTHO05D011491 4.2e-06 53.9 54 59.3
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 5.4e-06 53.5 50 60.0
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 5.4e-06 53.5 50 60.0
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 5.4e-06 53.5 50 60.0
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 5.4e-06 53.5 50 60.0
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 5.4e-06 53.5 50 60.0
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 5.4e-06 53.5 47 66.0
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 5.4e-06 53.5 47 66.0
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 5.4e-06 53.5 50 62.0
FAN05G3556 Fragaria x ananassa HOM05D009309 ORTHO05D011491 5.4e-06 53.5 50 64.0
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 5.4e-06 53.5 49 59.2
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 5.4e-06 53.5 49 59.2
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 5.4e-06 53.5 49 59.2
Lsat_1_v5_gn_2_106500 Lactuca sativa HOM05D007947 ORTHO05D010018 5.4e-06 53.5 50 58.0
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 5.4e-06 53.5 50 60.0
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 5.4e-06 53.5 52 57.7
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 7.1e-06 53.1 50 60.0
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 7.1e-06 53.1 50 60.0
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 7.1e-06 53.1 50 60.0
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 7.1e-06 53.1 50 60.0
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 7.1e-06 53.1 50 62.0
FAN02G2530 Fragaria x ananassa HOM05D009309 ORTHO05D011491 9.3e-06 52.8 50 66.0
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 9.3e-06 52.8 47 66.0


User provided reference genes

Program Settings