Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 2.9e-117 425.2 215 100.0
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 1.3e-93 346.7 224 76.8
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 1.0e-85 320.5 220 71.4
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 3.8e-85 318.5 220 70.9
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.4e-79 300.1 219 66.7
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 1.9e-76 289.7 219 65.3
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 1.2e-75 287.0 220 65.0
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 3.6e-75 285.4 218 64.7
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 7.5e-73 277.7 220 62.7
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 8.3e-72 274.2 231 58.9
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 2.0e-70 269.6 217 61.3
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 1.3e-69 266.9 217 60.4
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 9.4e-68 260.8 223 59.2
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 1.2e-67 260.4 216 59.3
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 6.8e-66 254.6 219 58.0
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 8.8e-66 254.2 228 57.0
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 2.6e-65 252.7 212 58.0
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 3.4e-65 252.3 218 56.0
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 4.4e-65 251.9 221 55.7
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 5.7e-65 251.5 221 55.7
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 1.3e-64 250.4 217 58.1
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 2.4e-63 246.1 210 58.6
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 3.1e-63 245.7 217 56.7
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.6e-62 243.4 199 59.8
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 2.0e-62 243.0 212 55.7
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 2.0e-62 243.0 213 57.7
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 3.5e-62 242.3 247 51.4
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 3.5e-62 242.3 209 56.0
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 3.5e-62 242.3 216 54.6
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 4.5e-62 241.9 218 53.7
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 7.7e-62 241.1 216 56.5
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 1.0e-61 240.7 205 56.6
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 1.7e-61 240.0 216 55.6
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 2.3e-61 239.6 230 50.9
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 2.3e-61 239.6 222 53.2
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 3.8e-61 238.8 224 52.7
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 5.0e-61 238.4 208 55.8
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 6.6e-61 238.0 225 55.1
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 2.5e-60 236.1 219 54.3
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 3.3e-60 235.7 209 54.1
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 5.6e-60 235.0 215 53.5
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 5.6e-60 235.0 235 51.1
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 5.6e-60 235.0 204 55.9
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 7.3e-60 234.6 222 50.9
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.6e-59 233.4 216 53.2
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 2.1e-59 233.0 191 57.1
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 2.1e-59 233.0 208 55.8
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 2.8e-59 232.6 206 54.9
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 2.8e-59 232.6 201 57.2
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 3.6e-59 232.3 204 55.4
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 3.6e-59 232.3 204 54.4
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 4.7e-59 231.9 204 53.9
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 4.7e-59 231.9 200 59.5
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 8.0e-59 231.1 218 53.2
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 1.0e-58 230.7 216 53.7
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 2.3e-58 229.6 204 53.9
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 4.0e-58 228.8 257 46.3
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 8.9e-58 227.6 204 54.4
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 8.9e-58 227.6 217 52.5
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 1.2e-57 227.3 204 53.4
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 1.5e-57 226.9 204 54.4
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 1.5e-57 226.9 208 52.4
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 2.6e-57 226.1 209 53.1
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 2.6e-57 226.1 216 54.2
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 3.4e-57 225.7 209 56.9
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 3.4e-57 225.7 203 54.7
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 4.4e-57 225.3 204 54.4
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 5.7e-57 224.9 204 53.9
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 1.3e-56 223.8 203 54.2
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 1.7e-56 223.4 207 54.1
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 6.4e-56 221.5 223 48.9
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 1.4e-55 220.3 213 51.6
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 3.2e-55 219.2 214 52.8
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 4.1e-55 218.8 205 52.7
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 5.4e-55 218.4 197 54.8
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 7.0e-55 218.0 265 44.5
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 9.2e-55 217.6 206 51.0
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.2e-54 217.2 208 51.4
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 2.0e-54 216.5 210 51.4
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 2.0e-54 216.5 208 51.9
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 2.7e-54 216.1 206 51.0
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 3.5e-54 215.7 210 55.7
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 4.6e-54 215.3 205 50.7
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 4.6e-54 215.3 216 49.5
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 5.9e-54 214.9 198 53.5
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 1.0e-53 214.2 220 50.5
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 1.0e-53 214.2 208 51.9
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.7e-53 213.4 219 51.1
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 2.3e-53 213.0 207 52.2
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 3.0e-53 212.6 197 53.3
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 5.0e-53 211.8 205 55.6
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 5.0e-53 211.8 216 48.1
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 6.6e-53 211.5 217 48.4
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 8.6e-53 211.1 226 48.2
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 1.1e-52 210.7 219 50.2
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 1.1e-52 210.7 219 47.9
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 1.9e-52 209.9 206 50.5
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 1.9e-52 209.9 200 54.0
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 9.5e-52 207.6 235 46.8
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 2.1e-51 206.5 206 50.5
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 1.0e-50 204.1 220 54.1
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 1.0e-50 204.1 198 51.5
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 3.1e-50 202.6 222 51.4
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 4.0e-50 202.2 228 52.2
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 6.8e-50 201.4 235 46.4
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.2e-49 200.7 193 51.8
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 1.2e-49 200.7 220 53.6
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.3e-48 197.2 205 49.8
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.3e-48 197.2 213 47.9
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.3e-48 197.2 209 48.8
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 3.7e-48 195.7 218 45.9
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 4.9e-48 195.3 211 53.6
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 4.9e-48 195.3 211 53.6
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 4.9e-48 195.3 196 48.5
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 6.4e-48 194.9 223 48.0
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 1.9e-47 193.4 199 50.3
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.2e-47 192.6 224 48.7
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 5.4e-47 191.8 209 52.6
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 9.2e-47 191.0 211 50.2
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 2.0e-46 189.9 207 48.3
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 2.7e-46 189.5 207 48.3
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 2.7e-46 189.5 137 62.0
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.7e-46 189.5 211 52.1
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.5e-46 189.1 233 43.8
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 4.6e-46 188.7 218 44.5
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 6.0e-46 188.3 220 42.7
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.0e-45 187.6 211 54.0
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 1.7e-45 186.8 225 42.2
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 3.0e-45 186.0 206 47.1
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 3.0e-45 186.0 169 53.3
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 3.9e-45 185.7 226 41.6
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 1.1e-44 184.1 207 44.0
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 1.1e-44 184.1 233 42.9
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 2.5e-44 183.0 235 40.4
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 3.3e-44 182.6 227 41.4
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 7.3e-44 181.4 206 47.6
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.6e-43 180.3 205 43.4
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 4.7e-43 178.7 200 43.0
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 6.2e-43 178.3 203 43.3
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 8.1e-43 177.9 198 49.5
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 1.1e-39 167.5 208 47.1
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 7.1e-39 164.9 205 44.4
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 7.1e-39 164.9 205 44.4
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 9.2e-39 164.5 208 46.6
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 2.1e-38 163.3 143 55.9
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 4.6e-38 162.2 200 42.0
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 1.0e-37 161.0 202 48.5
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 1.3e-37 160.6 134 54.5
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 8.6e-37 157.9 205 44.4
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 2.5e-36 156.4 185 44.3
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 2.3e-34 149.8 232 39.7
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.7e-32 143.7 215 37.2
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 8.4e-32 141.4 139 54.7
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 2.4e-31 139.8 157 47.1
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 2.7e-30 136.3 134 49.3
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 3.5e-30 136.0 214 36.9
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 8.6e-29 131.3 174 40.2
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 8.6e-29 131.3 209 38.8
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.9e-28 130.2 138 48.6
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 5.8e-25 118.6 137 41.6
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 2.9e-24 116.3 137 41.6
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 1.3e-21 107.5 116 47.4
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.7e-21 107.1 161 37.3
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 1.4e-18 97.4 108 47.2
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 3.8e-16 89.4 69 58.0
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.3e-13 80.9 61 57.4
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 5.6e-12 75.5 73 50.7
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 4.8e-11 72.4 114 36.0
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 6.2e-11 72.0 56 53.6
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 4.0e-10 69.3 114 33.3
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 1.2e-09 67.8 72 48.6
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 3.4e-09 66.2 67 49.3
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 3.4e-09 66.2 68 48.5
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 7.6e-09 65.1 62 51.6
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 7.1e-07 58.5 53 52.8
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 9.3e-07 58.2 82 39.0
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 4.6e-06 55.8 78 46.2
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 7.9e-06 55.1 73 39.7


User provided reference genes

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