Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G128100 Phaseolus vulgaris HOM05D005255 ORTHO05D006276 0.0e+00 1206.4 604 100.0
VMungo1383G2357 Vigna mungo HOM05D005255 ORTHO05D006276 0.0e+00 1088.6 611 90.0
Glyma.03G132200 Glycine max HOM05D005255 ORTHO05D006276 5.7e-280 967.2 652 77.9
Glyma.19G134000 Glycine max HOM05D005255 ORTHO05D006276 9.2e-270 933.3 653 76.3
Lj1g0022872 Lotus japonicus HOM05D005255 ORTHO05D006276 5.4e-254 880.9 654 70.9
Medtr7g090680 Medicago truncatula HOM05D005255 ORTHO05D006276 2.4e-249 865.5 648 70.2
VMungo1383G1524 Vigna mungo HOM05D005255 ORTHO05D006276 1.6e-242 842.8 530 82.6
arahy.Tifrunner.gnm1.ann1.FQMP84 Arachis hypogaea HOM05D005255 ORTHO05D006276 1.5e-232 809.7 655 65.3
arahy.Tifrunner.gnm1.ann1.5V2BX3 Arachis hypogaea HOM05D005255 ORTHO05D006276 9.9e-232 807.0 655 65.0
Lalb_Chr25g0287041 Lupinus albus HOM05D005255 ORTHO05D006276 1.7e-231 806.2 657 67.0
Psat3g075800 Pisum sativum HOM05D005255 ORTHO05D006276 4.3e-227 791.6 650 65.7
TPR.G32740 Trifolium pratense HOM05D005255 ORTHO05D006276 6.9e-217 757.7 626 64.5
CiPaw.09G042700 Carya illinoinensis HOM05D005255 ORTHO05D006276 5.0e-191 671.8 647 57.5
Cfa016749 Carpinus fangiana HOM05D005255 ORTHO05D006276 1.7e-183 646.7 637 56.5
Haze_19754 Corylus avellana HOM05D005255 ORTHO05D006276 8.5e-183 644.4 645 55.7
Atru.chr1.1248 Acer truncatum HOM05D005255 ORTHO05D006276 1.1e-182 644.0 670 53.7
Prupe.7G049600 Prunus persica HOM05D005255 ORTHO05D006276 4.0e-180 635.6 676 53.4
TWI74G1492 Tripterygium wilfordii HOM05D005255 ORTHO05D006276 5.2e-180 635.2 615 56.9
Duzib093G1389 Durio zibethinus HOM05D005255 ORTHO05D006276 2.8e-178 629.4 644 54.3
QL07p004453 Quercus lobata HOM05D005255 ORTHO05D006276 2.0e-176 623.2 584 58.2
Rhsim04G0108300 Rhododendron simsii HOM05D005255 ORTHO05D006276 2.3e-175 619.8 654 54.1
Actinidia38145 Actinidia chinensis HOM05D005255 ORTHO05D006276 2.8e-173 612.8 673 53.3
Ca_08423_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 3.6e-173 612.5 560 61.2
Manes.09G016721 Manihot esculenta HOM05D005255 ORTHO05D006276 1.5e-171 607.1 683 52.3
Thecc.05G144600 Theobroma cacao HOM05D005255 ORTHO05D006276 4.4e-171 605.5 644 53.0
COL.COLO4_21290 Corchorus olitorius HOM05D005255 ORTHO05D006276 3.7e-170 602.4 645 53.6
CSS0035930 Camellia sinensis var. sinensis HOM05D005255 ORTHO05D006276 6.3e-170 601.7 665 52.3
RcHm_v2.0_Chr3g0484561 Rosa chinensis HOM05D005255 ORTHO05D006276 6.3e-170 601.7 627 54.1
Manes.09G016500 Manihot esculenta HOM05D005255 ORTHO05D006276 1.8e-169 600.1 683 52.3
Sabra06G0031000 Salix brachista HOM05D005255 ORTHO05D006276 1.0e-167 594.3 672 52.2
Eucgr.A02293 Eucalyptus grandis HOM05D005255 ORTHO05D006276 1.9e-166 590.1 651 50.5
CANSAT80G1558 Cannabis sativa HOM05D005255 ORTHO05D006276 5.6e-166 588.6 691 50.4
Migut.J01697 Erythranthe guttata HOM05D005255 ORTHO05D006276 1.6e-165 587.0 651 53.6
ECA236G0023 Erigeron canadensis HOM05D005255 ORTHO05D006276 1.8e-164 583.6 626 51.6
HanXRQChr06g0176811 Helianthus annuus HOM05D005255 ORTHO05D006276 1.3e-162 577.4 613 51.9
Lj1A1118T28 Lonicera japonica HOM05D005255 ORTHO05D006276 1.9e-161 573.5 550 56.2
Cc06_g18410 Coffea canephora HOM05D005255 ORTHO05D006276 2.4e-161 573.2 638 51.3
Solyc04g017650.4 Solanum lycopersicum HOM05D005255 ORTHO05D006276 4.1e-161 572.4 645 51.3
Sopen04g008740 Solanum pennellii HOM05D005255 ORTHO05D006276 3.5e-160 569.3 647 50.9
Ciclev10006800m.g Citrus clementina HOM05D005255 ORTHO05D006276 7.8e-160 568.2 624 53.7
Dinv30292 Davidia involucrata HOM05D005255 ORTHO05D006276 2.3e-159 566.6 676 51.6
Aa31LG1G23460 Aethionema arabicum HOM05D005255 ORTHO05D006276 6.6e-159 565.1 639 49.5
SalBow6G4730 Salvia bowleyana HOM05D005255 ORTHO05D006276 1.9e-158 563.5 656 49.1
Thhalv10016390m.g Eutrema salsugineum HOM05D005255 ORTHO05D006276 2.1e-157 560.1 635 49.0
Sed0023795 Sechium edule HOM05D005255 ORTHO05D006276 6.8e-156 555.1 599 51.4
Lj1C1121T6 Lonicera japonica HOM05D005255 ORTHO05D006276 1.5e-155 553.9 536 56.0
Oeu008184.2 Olea europaea HOM05D005255 ORTHO05D006276 1.5e-155 553.9 653 49.9
GSVIVG01033557001 Vitis vinifera HOM05D005255 ORTHO05D006276 2.6e-155 553.1 648 49.7
AT2G41450 Arabidopsis thaliana HOM05D005255 ORTHO05D006276 2.2e-154 550.1 628 49.5
ClCG04G003970 Citrullus lanatus HOM05D005255 ORTHO05D006276 3.7e-154 549.3 597 51.8
THA.LOC104817056 Tarenaya hassleriana HOM05D005255 ORTHO05D006276 3.7e-154 549.3 648 49.4
CAN.G1237.20 Capsicum annuum HOM05D005255 ORTHO05D006276 1.9e-153 547.0 639 50.7
PSO339G5261 Papaver somniferum HOM05D005255 ORTHO05D006276 5.4e-153 545.4 673 48.0
Peaxi162Scf00130g01019 Petunia axillaris HOM05D005255 ORTHO05D006276 3.5e-152 542.7 640 49.2
CARHR136560 Cardamine hirsuta HOM05D005255 ORTHO05D006276 7.8e-152 541.6 613 47.5
DCAR_020535 Daucus carota HOM05D005255 ORTHO05D006276 2.3e-151 540.0 657 47.0
EL10Ac3g07169 Beta vulgaris HOM05D005255 ORTHO05D006276 3.0e-151 539.7 640 47.7
Sp4g23710 Schrenkiella parvula HOM05D005255 ORTHO05D006276 3.9e-151 539.3 633 47.7
Nn7g36447 Nelumbo nucifera HOM05D005255 ORTHO05D006276 6.6e-151 538.5 700 45.3
Hund24659 Selenicereus undatus HOM05D005255 ORTHO05D006276 8.6e-151 538.1 648 46.8
AL4G39520 Arabidopsis lyrata HOM05D005255 ORTHO05D006276 8.1e-149 531.6 618 48.7
Potri.006G045100 Populus trichocarpa HOM05D005255 ORTHO05D006276 8.1e-149 531.6 571 53.2
CANSAT80G0695 Cannabis sativa HOM05D005255 ORTHO05D006276 1.4e-148 530.8 592 52.2
PGR031G1801 Punica granatum HOM05D005255 ORTHO05D006276 1.4e-148 530.8 599 48.9
AUR62030394 Chenopodium quinoa HOM05D005255 ORTHO05D006276 4.0e-148 529.3 648 46.9
Nitab4.5_0005195g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 1.5e-147 527.3 649 48.5
Aqoxy2G00272 Aquilegia oxysepala HOM05D005255 ORTHO05D006276 1.3e-146 524.2 695 46.6
Ah.13g076740 Amaranthus hybridus HOM05D005255 ORTHO05D006276 1.1e-145 521.2 642 47.2
MELO3C014208.2 Cucumis melo HOM05D005255 ORTHO05D006276 1.2e-144 517.7 659 47.5
AUR62026140 Chenopodium quinoa HOM05D005255 ORTHO05D006276 4.6e-144 515.8 673 46.1
SGA_v2.0_scaffold105G30345 Striga asiatica HOM05D005255 ORTHO05D006276 3.9e-143 512.7 676 46.2
CDE08G0636 Ceratophyllum demersum HOM05D005255 ORTHO05D006276 1.5e-142 510.8 613 47.0
TAR623G1148 Trochodendron aralioides HOM05D005255 ORTHO05D006276 2.5e-142 510.0 673 46.5
Carub.0004s2374 Capsella rubella HOM05D005255 ORTHO05D006276 5.6e-142 508.8 561 49.6
Lsat_1_v5_gn_8_83080 Lactuca sativa HOM05D005255 ORTHO05D006276 1.4e-140 504.2 529 51.6
C04p02730 Brassica napus HOM05D005255 ORTHO05D006276 3.4e-139 499.6 542 50.0
BolC4t21913H Brassica oleracea HOM05D005255 ORTHO05D006276 3.4e-139 499.6 542 50.0
BraA05t19224Z Brassica rapa HOM05D005255 ORTHO05D006276 5.8e-139 498.8 548 49.5
BcaC02g12783 Brassica carinata HOM05D005255 ORTHO05D006276 2.7e-136 490.0 547 48.4
A05p02290 Brassica napus HOM05D005255 ORTHO05D006276 3.0e-135 486.5 574 47.2
Zm00001eb286800 Zea mays HOM05D005255 ORTHO05D006276 3.9e-135 486.1 607 43.8
Nitab4.5_0011420g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 1.1e-134 484.6 708 43.2
Os05g0376600 Oryza sativa ssp. japonica HOM05D005255 ORTHO05D006276 1.1e-129 468.0 627 42.4
MBI19_g17528_MAGBIO Magnolia biondii HOM05D005255 ORTHO05D006276 4.8e-125 452.6 727 40.7
ATR0721G141 Amborella trichopoda HOM05D005255 ORTHO05D006276 1.0e-119 434.9 782 36.6
TAR624G0617 Trochodendron aralioides HOM05D005255 ORTHO05D006276 1.2e-115 421.4 522 47.7
HPP92_003251 Vanilla planifolia HOM05D005255 ORTHO05D006276 2.9e-114 416.8 539 43.0
TAR623G1440 Trochodendron aralioides HOM05D005255 ORTHO05D006276 6.4e-114 415.6 611 43.0
FvH4_6g24820 Fragaria vesca HOM05D005255 ORTHO05D006276 4.6e-112 409.5 492 49.6
Cpa.g.sc120.15 Carica papaya HOM05D005255 ORTHO05D006276 1.2e-99 368.2 532 42.9
Sc13g0001470 Simmondsia chinensis HOM05D005255 ORTHO05D006276 1.4e-87 328.2 487 45.2
FAN14G1086 Fragaria x ananassa HOM05D005255 ORTHO05D006276 5.3e-84 316.2 435 46.0
AagrBONN_evm.TU.Sc2ySwM_228.5074 Anthoceros agrestis HOM05D005255 ORTHO05D006276 9.1e-84 315.5 804 30.2
PGSC0003DMG400012725 Solanum tuberosum HOM05D005255 ORTHO05D006276 4.7e-80 303.1 309 53.7
RcHm_v2.0_Chr3g0484121 Rosa chinensis HOM05D005255 ORTHO05D006276 1.9e-73 281.2 198 71.2
Nitab4.5_0000826g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 2.6e-70 270.8 309 50.5
Pp3c8_2040 Physcomitrium patens HOM05D005255 ORTHO05D006276 2.8e-69 267.3 758 27.4
CsaV3_4G021950 Cucumis sativus L. HOM05D005255 ORTHO05D006276 1.1e-68 265.4 179 69.3
MSTRG.6398 Avicennia marina HOM05D005255 ORTHO05D006276 1.0e-63 248.8 176 70.5
CAN.G1237.18 Capsicum annuum HOM05D005255 ORTHO05D006276 3.5e-59 233.8 199 58.8
Pp3c4_1630 Physcomitrium patens HOM05D005255 ORTHO05D006276 2.5e-57 227.6 953 24.4
Pp3c4_1631 Physcomitrium patens HOM05D005255 ORTHO05D006276 2.5e-57 227.6 953 24.4
unitig_8.g3497 Utricularia gibba HOM05D005255 ORTHO05D006276 2.5e-57 227.6 228 53.9
Mapoly0085s0026 Marchantia polymorpha HOM05D005255 ORTHO05D006276 6.8e-55 219.5 1006 23.4
SEGI_00937 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 2.3e-50 204.5 177 54.2
HPP92_003249 Vanilla planifolia HOM05D005255 ORTHO05D006276 5.6e-49 199.9 314 36.6
vmacro09038 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 9.5e-49 199.1 145 65.5
Ca_13718_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 2.9e-45 187.6 224 51.8
FAN02G3622 Fragaria x ananassa HOM05D005255 ORTHO05D006276 2.9e-45 187.6 355 39.2
Ca_08424_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 1.2e-43 182.2 116 75.9
Ca_20730_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 5.6e-41 173.3 379 36.4
MSTRG.6397 Avicennia marina HOM05D005255 ORTHO05D006276 9.5e-41 172.6 310 41.3
Ca_30365_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 2.6e-38 164.5 182 52.2
PGSC0003DMG400012726 Solanum tuberosum HOM05D005255 ORTHO05D006276 1.3e-37 162.2 155 53.5
Nitab4.5_0001618g0070 Nicotiana tabacum HOM05D005255 ORTHO05D006276 2.2e-37 161.4 124 65.3
Sopen04g008710 Solanum pennellii HOM05D005255 ORTHO05D006276 1.4e-36 158.7 124 65.3
vmacro09037 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 1.6e-35 155.2 267 41.9
SMO364G0001 Selaginella moellendorffii HOM05D005255 ORTHO05D006276 1.3e-34 152.1 222 36.9
unitig_8.g3496 Utricularia gibba HOM05D005255 ORTHO05D006276 6.6e-34 149.8 398 33.2
RcHm_v2.0_Chr3g0484111 Rosa chinensis HOM05D005255 ORTHO05D006276 7.6e-30 136.3 176 45.5
TAR628G1157 Trochodendron aralioides HOM05D005255 ORTHO05D006276 1.2e-27 129.0 138 50.7
Lsat_1_v5_gn_8_83120 Lactuca sativa HOM05D005255 ORTHO05D006276 2.7e-27 127.9 184 40.8
FAN14G4897 Fragaria x ananassa HOM05D005255 ORTHO05D006276 5.1e-26 123.6 137 51.1
vmacro09036 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 1.5e-25 122.1 80 72.5
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 8.1e-24 116.3 172 44.8
RcHm_v2.0_Chr1g0374991 Rosa chinensis HOM05D005255 ORTHO05D006276 6.8e-23 113.2 69 73.9
Nitab4.5_0000826g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 1.9e-20 105.1 60 78.3
SEGI_13590 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 2.4e-20 104.8 102 46.1
Lsat_1_v5_gn_5_6521 Lactuca sativa HOM05D005255 ORTHO05D006276 2.1e-19 101.7 92 53.3
SEGI_06354 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 5.6e-17 93.6 69 65.2
SEGI_39771 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 2.8e-16 91.3 98 43.9
Pp3c12_23820 Physcomitrium patens HOM05D005255 ORTHO05D006276 1.5e-14 85.5 75 50.7
CAN.G1237.19 Capsicum annuum HOM05D005255 ORTHO05D006276 3.4e-14 84.3 63 65.1
TAR624G0532 Trochodendron aralioides HOM05D005255 ORTHO05D006276 4.4e-14 84.0 59 67.8
SEGI_33554 Sequoiadendron giganteum HOM05D002556 ORTHO05D003153 1.3e-13 82.4 201 26.9
Sc24g0003990 Simmondsia chinensis HOM05D002556 ORTHO05D003153 3.8e-13 80.9 202 25.7
BolSC21t60285H Brassica oleracea HOM05D005255 ORTHO05D021741 3.5e-11 74.3 85 42.4
DCAR_002786 Daucus carota HOM05D001702 ORTHO05D003153 3.5e-11 74.3 188 25.5
SMO364G0772 Selaginella moellendorffii HOM05D005255 ORTHO05D006276 2.3e-10 71.6 171 32.2
Hma1.2p1_0209F.1_g089150 Hydrangea macrophylla HOM05D002556 ORTHO05D003153 3.9e-10 70.9 194 24.2
Cc01_g20180 Coffea canephora HOM05D002556 ORTHO05D003153 6.6e-10 70.1 185 23.8
BcaB04g19772 Brassica carinata HOM05D005255 ORTHO05D021741 8.7e-10 69.7 58 55.2
Actinidia21081 Actinidia chinensis HOM05D002556 ORTHO05D003153 1.1e-09 69.3 195 22.6
Gohir.D08G080000 Gossypium hirsutum HOM05D002556 ORTHO05D003153 1.1e-09 69.3 195 23.6
Gorai.004G085000 Gossypium raimondii HOM05D002556 ORTHO05D003153 1.5e-09 68.9 195 23.6
Nn3g21259 Nelumbo nucifera HOM05D002556 ORTHO05D003153 1.9e-09 68.6 198 23.7
Nn3g21262 Nelumbo nucifera HOM05D002556 ORTHO05D003153 1.9e-09 68.6 198 23.7
Gohir.A08G071800 Gossypium hirsutum HOM05D002556 ORTHO05D003153 3.3e-09 67.8 195 23.1
Oeu047907.1 Olea europaea HOM05D002556 ORTHO05D003153 4.3e-09 67.4 183 24.0
Rhsim01G0279800 Rhododendron simsii HOM05D002556 ORTHO05D003153 4.3e-09 67.4 215 21.9
Thecc.01G289800 Theobroma cacao HOM05D002556 ORTHO05D003153 5.6e-09 67.0 194 23.7
C03p67440 Brassica napus HOM05D005255 ORTHO05D021741 9.6e-09 66.2 49 59.2
Dinv32988 Davidia involucrata HOM05D002556 ORTHO05D003153 9.6e-09 66.2 191 22.0
Manes.05G068700 Manihot esculenta HOM05D002556 ORTHO05D003153 9.6e-09 66.2 194 21.1
Atru.chr5.1286 Acer truncatum HOM05D002556 ORTHO05D003153 2.1e-08 65.1 203 21.7
C03p67420 Brassica napus HOM05D005255 ORTHO05D021741 2.8e-08 64.7 53 54.7
Pp3c11_4990 Physcomitrium patens HOM05D002556 ORTHO05D003153 4.8e-08 63.9 187 21.9
FAN20G3156 Fragaria x ananassa HOM05D002556 ORTHO05D003153 3.1e-07 61.2 199 20.1
FAN27G2445 Fragaria x ananassa HOM05D002556 ORTHO05D003153 3.1e-07 61.2 199 20.1
Haze_04805 Corylus avellana HOM05D002556 ORTHO05D003153 5.3e-07 60.5 196 21.9
QL07p015831 Quercus lobata HOM05D002556 ORTHO05D003153 6.9e-07 60.1 311 21.2
CiPaw.08G100700 Carya illinoinensis HOM05D002556 ORTHO05D003153 9.0e-07 59.7 180 21.7
QL12p023870 Quercus lobata HOM05D002556 ORTHO05D003153 9.0e-07 59.7 337 22.0
FAN15G0898 Fragaria x ananassa HOM05D002556 ORTHO05D003153 1.2e-06 59.3 199 20.1
MSTRG.18194 Avicennia marina HOM05D002556 ORTHO05D003153 1.5e-06 58.9 182 24.2
RcHm_v2.0_Chr6g0292491 Rosa chinensis HOM05D002556 ORTHO05D003153 2.6e-06 58.2 194 21.1
Prupe.8G251900 Prunus persica HOM05D002556 ORTHO05D003153 7.6e-06 56.6 194 21.6


User provided reference genes

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