Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 4.5e-104 381.3 201 100.0
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 1.3e-87 326.6 203 89.2
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 2.6e-80 302.4 209 81.8
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 1.4e-76 290.0 209 79.4
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 1.2e-67 260.4 208 71.2
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 5.4e-65 251.5 210 68.1
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 1.6e-64 250.0 208 64.9
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 7.7e-64 247.7 208 68.8
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 2.8e-61 239.2 211 64.9
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 3.4e-59 232.3 209 63.6
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 4.4e-59 231.9 246 55.3
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 9.8e-59 230.7 219 62.6
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 2.8e-58 229.2 208 63.9
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 1.9e-54 216.5 212 59.4
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 2.4e-49 199.5 199 57.3
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 4.1e-49 198.7 201 58.7
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 5.2e-44 181.8 207 55.1
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 3.7e-42 175.6 213 54.5
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 3.7e-42 175.6 204 52.5
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 8.3e-42 174.5 224 48.7
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 4.1e-41 172.2 200 53.0
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 1.2e-40 170.6 160 60.6
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.6e-40 170.2 204 52.5
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 4.6e-40 168.7 222 50.0
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 1.3e-39 167.2 197 53.3
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.7e-39 166.8 211 48.3
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.7e-39 166.8 196 51.0
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.0e-39 166.0 214 50.9
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 8.6e-39 164.5 218 48.6
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 1.1e-38 164.1 246 46.7
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 1.1e-38 164.1 206 51.9
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 1.5e-38 163.7 201 52.2
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 1.9e-38 163.3 217 52.1
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 2.5e-38 162.9 202 50.5
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 3.3e-38 162.5 203 47.3
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 3.3e-38 162.5 205 49.3
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 4.3e-38 162.2 216 49.1
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 5.6e-38 161.8 216 50.0
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 5.6e-38 161.8 210 49.0
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 7.3e-38 161.4 205 48.3
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 7.3e-38 161.4 218 49.5
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.2e-37 160.6 206 51.5
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 1.6e-37 160.2 218 45.9
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 1.6e-37 160.2 215 50.2
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 2.1e-37 159.8 207 51.7
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 2.8e-37 159.5 205 50.2
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 6.2e-37 158.3 198 50.5
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 6.2e-37 158.3 219 47.5
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 8.1e-37 157.9 204 47.1
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.1e-36 157.5 205 47.8
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 1.1e-36 157.5 202 48.0
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.4e-36 157.1 201 49.8
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 2.3e-36 156.4 201 49.8
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.3e-36 156.4 209 48.8
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 4.0e-36 155.6 211 48.3
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.2e-35 154.1 212 47.2
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 3.4e-35 152.5 195 47.7
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 5.8e-35 151.8 202 47.5
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 5.8e-35 151.8 201 47.3
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 9.9e-35 151.0 210 45.7
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 9.9e-35 151.0 202 51.0
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 2.9e-34 149.4 220 47.3
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 3.7e-34 149.1 204 47.1
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 6.4e-34 148.3 207 47.8
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.4e-33 146.4 205 47.3
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 7.1e-33 144.8 210 46.7
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.6e-32 143.7 208 46.2
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 2.1e-32 143.3 204 47.1
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 3.5e-32 142.5 192 47.9
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 4.6e-32 142.1 201 45.8
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 6.0e-32 141.7 202 45.5
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 6.0e-32 141.7 202 48.0
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 1.7e-31 140.2 204 44.6
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 2.3e-31 139.8 202 44.6
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 3.0e-31 139.4 203 45.3
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 3.9e-31 139.0 204 44.1
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 5.1e-31 138.7 202 44.6
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 5.1e-31 138.7 199 47.7
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 1.1e-30 137.5 202 47.0
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 5.6e-30 135.2 204 43.1
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 5.6e-30 135.2 204 43.1
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 5.6e-30 135.2 204 43.1
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 1.6e-29 133.7 205 42.0
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.8e-29 132.9 204 43.6
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 3.6e-29 132.5 204 42.2
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 3.6e-29 132.5 204 42.6
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 3.6e-29 132.5 205 43.9
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 3.6e-29 132.5 212 42.0
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 4.7e-29 132.1 207 44.4
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 6.2e-29 131.7 199 44.7
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 6.2e-29 131.7 205 43.9
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 8.1e-29 131.3 202 44.1
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 1.1e-28 131.0 205 44.9
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.4e-28 130.6 210 43.3
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 1.8e-28 130.2 212 46.7
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.8e-28 130.2 205 44.9
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.8e-28 130.2 205 44.9
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 2.4e-28 129.8 217 42.4
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.1e-28 129.4 197 45.2
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.2e-28 128.6 205 44.4
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 6.8e-28 128.3 209 44.5
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 2.0e-27 126.7 212 42.9
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 3.4e-27 125.9 205 42.9
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 3.4e-27 125.9 208 40.9
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 3.4e-27 125.9 212 43.4
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 4.4e-27 125.6 185 47.0
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 7.6e-27 124.8 207 43.5
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 9.9e-27 124.4 206 43.7
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 1.7e-26 123.6 202 42.1
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 1.7e-26 123.6 201 42.3
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 2.2e-26 123.2 189 42.3
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 2.2e-26 123.2 212 42.5
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 2.2e-26 123.2 196 44.9
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 2.9e-26 122.9 229 37.6
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 4.9e-26 122.1 193 45.1
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 1.1e-25 120.9 214 40.7
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 1.4e-25 120.6 192 43.2
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 1.9e-25 120.2 196 44.9
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 7.1e-25 118.2 189 42.3
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.2e-24 117.5 192 43.8
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-24 117.5 190 42.6
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 1.2e-24 117.5 187 43.9
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 2.1e-24 116.7 202 42.6
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.1e-24 116.7 207 43.0
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 2.7e-24 116.3 222 36.0
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 4.6e-24 115.5 181 43.6
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 7.8e-24 114.8 199 42.7
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 3.0e-23 112.8 187 42.2
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 3.0e-23 112.8 187 42.2
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 3.0e-23 112.8 187 42.2
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 5.1e-23 112.1 187 40.6
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 5.1e-23 112.1 188 42.6
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 8.7e-23 111.3 181 43.6
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 8.7e-23 111.3 199 42.7
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.1e-22 110.9 201 40.3
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.5e-22 110.5 210 38.6
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 1.5e-22 110.5 178 44.4
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 2.5e-22 109.8 187 39.0
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 3.3e-22 109.4 187 41.2
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 4.3e-22 109.0 181 43.1
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 2.1e-21 106.7 204 39.7
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 4.0e-20 102.4 168 43.5
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 4.0e-20 102.4 232 35.3
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 1.2e-19 100.9 127 50.4
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 5.8e-19 98.6 218 36.7
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 7.6e-19 98.2 193 39.9
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 9.9e-19 97.8 186 39.2
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 1.3e-18 97.4 217 35.9
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 1.7e-18 97.1 178 38.2
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 1.7e-18 97.1 178 38.2
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 2.4e-17 93.2 82 63.4
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 7.1e-17 91.7 178 38.2
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 7.1e-17 91.7 178 38.2
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 1.6e-16 90.5 178 36.5
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.1e-16 90.1 127 44.1
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 6.0e-16 88.6 212 31.6
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 1.3e-15 87.4 90 58.9
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.5e-14 84.0 201 32.3
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 1.3e-13 80.9 209 33.5
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 8.1e-13 78.2 77 62.3
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 9.0e-12 74.7 118 44.1
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 5.8e-11 72.0 198 29.3
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 7.6e-11 71.6 211 32.2
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 3.8e-10 69.3 186 29.0
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.4e-09 66.6 184 34.8
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 7.1e-09 65.1 186 31.7
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 9.3e-09 64.7 192 32.3
CDE07G0150 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.2e-08 64.3 131 38.2
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 3.5e-08 62.8 179 30.7
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 6.0e-08 62.0 198 29.8
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 7.9e-08 61.6 215 27.9
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.8e-07 60.5 189 31.7
Zm00001eb359900 Zea mays HOM05D015480 ORTHO05D019326 1.5e-06 57.4 195 27.7
Oeu035281.1 Olea europaea HOM05D004039 ORTHO05D004573 1.9e-06 57.0 166 31.9
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 5.6e-06 55.5 193 31.6
Os09g0511300 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 7.4e-06 55.1 183 26.2
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 9.6e-06 54.7 183 28.4
Zm00001eb318080 Zea mays HOM05D015480 ORTHO05D445428 9.6e-06 54.7 218 25.7


User provided reference genes

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