Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 2260.0 1159 100.0
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 2203.7 1159 97.6
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 2157.5 1162 95.5
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 2124.7 1165 94.0
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 2124.4 1160 93.2
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 2102.4 1160 92.4
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 2100.5 1159 92.1
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 2097.8 1159 92.4
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 2092.8 1161 92.0
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 2066.2 1161 91.6
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 2060.8 1172 90.7
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 2011.5 1167 87.2
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1998.0 1172 86.7
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1996.9 1173 86.1
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1995.3 1167 86.6
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1992.6 1166 86.4
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1986.5 1166 86.3
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1985.3 1163 87.2
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1982.2 1173 85.2
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1980.7 1160 86.5
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1980.7 1160 85.3
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1979.9 1166 85.9
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1978.4 1165 86.1
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1978.0 1167 85.6
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1971.4 1164 85.9
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1968.0 1174 85.6
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1965.7 1165 85.8
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1965.3 1166 85.3
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1964.5 1164 85.4
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1964.1 1167 85.6
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1961.4 1172 84.6
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1959.9 1175 84.9
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1950.6 1169 85.1
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1949.5 1170 84.4
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1948.7 1164 84.8
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1948.3 1167 85.1
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1945.2 1168 84.1
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1944.1 1172 84.2
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1944.1 1173 83.6
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1943.7 1172 84.1
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1942.9 1177 84.4
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1942.5 1172 84.2
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1941.8 1165 83.7
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1941.0 1165 84.2
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1939.5 1176 83.8
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1938.7 1174 84.2
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1937.9 1169 84.7
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1937.5 1203 82.0
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1937.2 1165 84.1
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1935.2 1165 84.5
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1927.5 1164 83.7
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1926.0 1164 83.5
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1923.7 1172 82.2
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1923.7 1196 83.0
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1917.5 1211 80.9
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1917.1 1173 82.8
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1915.6 1168 82.5
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1915.2 1177 82.8
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1913.7 1171 82.9
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1912.1 1164 83.1
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1911.0 1165 83.0
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1909.0 1165 84.5
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1907.9 1091 87.1
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1906.7 1180 82.0
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1906.0 1176 82.4
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1905.2 1172 82.3
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1904.0 1180 81.9
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1901.7 1168 82.2
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1901.7 1172 82.1
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1901.7 1172 82.1
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1901.7 1181 81.5
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1898.2 1176 82.2
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1897.1 1184 81.2
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1895.9 1168 82.0
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1890.9 1191 80.7
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1890.2 1159 81.2
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1888.6 1162 82.1
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1882.8 1206 79.9
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1882.8 1168 81.5
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1879.4 1163 81.8
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1875.1 1168 81.0
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1872.4 1165 81.4
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1868.6 1151 82.9
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1867.8 1100 84.4
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1842.8 1170 80.9
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1840.9 1099 82.9
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1819.3 1176 79.3
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1809.3 1194 78.8
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1800.0 1326 72.4
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1791.2 1161 77.2
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1786.9 1172 77.6
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1760.0 1168 75.0
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1724.1 1160 74.8
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1722.2 1149 77.0
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1699.5 935 92.4
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1685.6 1165 73.3
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1637.1 1160 70.9
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1627.8 1161 71.1
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1616.7 994 82.2
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1612.0 1151 74.5
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1456.4 847 86.8
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1441.0 1159 62.9
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1434.9 1156 64.0
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1407.9 839 84.7
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1379.0 1155 61.6
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1375.1 1156 61.9
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1363.2 1172 60.5
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1345.1 799 84.4
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1275.0 798 80.1
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1214.1 782 77.7
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1110.1 914 61.5
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1105.5 695 80.4
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 7.8e-302 1040.8 1188 45.5
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 1.8e-298 1029.6 651 79.1
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 7.1e-287 991.1 591 84.1
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 3.9e-285 985.3 576 87.2
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.6e-281 972.6 743 69.9
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.3e-272 943.7 599 81.5
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 1.9e-271 939.9 546 87.5
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 1.1e-258 897.5 627 73.0
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.6e-257 892.9 520 82.9
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 3.0e-216 756.5 476 79.6
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 2.1e-214 750.4 465 79.1
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 5.1e-208 729.2 438 85.4
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 4.1e-165 586.6 357 86.3
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 1.9e-154 551.2 354 79.4
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 8.6e-115 419.5 378 56.9
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 3.0e-112 411.0 274 75.9
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 2.0e-87 328.6 195 83.6
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 1.8e-64 252.3 169 82.2
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 1.9e-45 189.1 143 69.2
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 6.7e-43 180.6 117 82.9
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 1.7e-38 166.0 103 83.5
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 2.9e-38 165.2 109 79.8
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 6.1e-36 157.5 78 93.6
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 1.8e-35 156.0 87 85.1
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 4.1e-32 144.8 96 79.2
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 7.5e-18 97.4 82 59.8
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 1.3e-17 96.7 82 58.5
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 1.7e-17 96.3 92 68.5
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 2.8e-17 95.5 84 66.7
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.4e-16 93.2 51 84.3
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.8e-16 92.8 51 84.3
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 1.6e-15 89.7 51 82.4
TAR381G0591 Trochodendron aralioides HOM05D000199 ORTHO05D015700 3.8e-06 58.5 37 70.3
Manes.10G036656 Manihot esculenta HOM05D005231 ORTHO05D006387 5.0e-06 58.2 57 52.6
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 5.0e-06 58.2 338 25.4


User provided reference genes

Program Settings