Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 7.0e-53 210.3 103 100.0
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 7.8e-52 206.8 103 97.1
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 1.0e-51 206.5 103 98.1
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 2.8e-49 198.4 101 94.1
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 8.0e-49 196.8 102 93.1
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 6.8e-48 193.7 101 92.1
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 1.5e-47 192.6 103 88.3
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 7.5e-47 190.3 103 90.3
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 1.3e-46 189.5 101 89.1
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 1.3e-46 189.5 101 90.1
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 1.3e-46 189.5 101 90.1
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 1.7e-46 189.1 103 87.4
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 2.2e-46 188.7 103 87.4
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 2.2e-46 188.7 103 86.4
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 2.2e-46 188.7 103 86.4
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 2.2e-46 188.7 101 89.1
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 2.2e-46 188.7 102 87.3
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 2.9e-46 188.3 103 85.4
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 2.9e-46 188.3 103 87.4
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 3.7e-46 188.0 103 85.4
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 4.9e-46 187.6 103 86.4
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 8.3e-46 186.8 100 90.0
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 8.3e-46 186.8 100 90.0
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 8.3e-46 186.8 103 86.4
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 1.1e-45 186.4 103 88.3
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 1.4e-45 186.0 103 84.5
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 1.9e-45 185.7 103 86.4
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 1.9e-45 185.7 103 86.4
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 1.9e-45 185.7 103 86.4
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 3.2e-45 184.9 103 84.5
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 4.1e-45 184.5 103 83.5
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 4.1e-45 184.5 103 85.4
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 7.0e-45 183.7 103 84.5
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 7.0e-45 183.7 103 85.4
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 9.2e-45 183.3 103 84.5
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 1.2e-44 183.0 99 87.9
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 1.6e-44 182.6 103 84.5
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 2.0e-44 182.2 103 82.5
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 3.5e-44 181.4 103 83.5
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 3.5e-44 181.4 102 85.3
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 3.5e-44 181.4 103 83.5
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 4.6e-44 181.0 103 84.5
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 4.6e-44 181.0 103 84.5
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 4.6e-44 181.0 103 84.5
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 4.6e-44 181.0 103 82.5
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 7.8e-44 180.3 101 83.2
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 7.8e-44 180.3 103 83.5
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 1.0e-43 179.9 103 82.5
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 1.3e-43 179.5 112 78.6
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 1.3e-43 179.5 107 83.2
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 1.3e-43 179.5 103 82.5
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 1.7e-43 179.1 101 85.1
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 3.0e-43 178.3 103 81.6
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 3.0e-43 178.3 101 80.2
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 5.0e-43 177.6 100 84.0
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 8.6e-43 176.8 103 81.6
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 1.5e-42 176.0 102 80.4
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 1.5e-42 176.0 100 83.0
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 1.9e-42 175.6 102 80.4
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 2.5e-42 175.3 103 81.6
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 2.5e-42 175.3 102 79.4
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 4.3e-42 174.5 100 80.0
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 4.3e-42 174.5 100 82.0
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 9.5e-42 173.3 101 82.2
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 9.5e-42 173.3 102 77.5
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 9.5e-42 173.3 92 90.2
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 1.2e-41 172.9 114 74.6
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 1.2e-41 172.9 99 83.8
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 1.2e-41 172.9 100 81.0
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 3.6e-41 171.4 99 81.8
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 3.6e-41 171.4 102 78.4
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 4.7e-41 171.0 105 78.1
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 1.1e-40 169.9 100 78.0
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 1.4e-40 169.5 101 77.2
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 1.4e-40 169.5 99 78.8
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 1.4e-40 169.5 99 78.8
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 1.4e-40 169.5 99 78.8
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 1.4e-40 169.5 99 78.8
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 1.4e-40 169.5 101 75.2
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 1.8e-40 169.1 100 79.0
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 1.8e-40 169.1 99 79.8
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 1.8e-40 169.1 99 79.8
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 2.3e-40 168.7 101 77.2
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 2.3e-40 168.7 99 77.8
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 5.2e-40 167.5 94 84.0
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 5.2e-40 167.5 101 77.2
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 1.2e-39 166.4 100 75.0
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 1.2e-39 166.4 99 77.8
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 1.5e-39 166.0 98 77.6
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 2.6e-39 165.2 98 77.6
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 4.4e-39 164.5 98 77.6
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 7.5e-39 163.7 98 75.5
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 7.5e-39 163.7 101 75.2
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 9.8e-39 163.3 94 79.8
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 6.4e-38 160.6 101 71.3
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 1.4e-37 159.5 94 80.9
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 3.9e-35 151.4 101 70.3
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 8.6e-35 150.2 100 65.0
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 1.2e-33 146.4 92 70.7
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 3.1e-32 141.7 101 63.4
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 6.8e-32 140.6 101 62.4
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 2.6e-31 138.7 74 89.2
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 5.8e-31 137.5 74 86.5
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 7.5e-31 137.1 82 76.8
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 9.9e-31 136.7 71 88.7
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 9.9e-31 136.7 99 54.5
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 1.3e-30 136.3 74 86.5
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 3.7e-30 134.8 71 90.1
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 8.3e-30 133.7 100 54.0
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 1.4e-29 132.9 71 88.7
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 2.4e-29 132.1 72 84.7
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 2.4e-29 132.1 76 86.8
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 3.2e-29 131.7 72 86.1
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 1.0e-27 126.7 75 76.0
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 1.7e-27 125.9 99 54.5
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 3.9e-27 124.8 71 83.1
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 6.2e-25 117.5 76 65.8
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 6.2e-25 117.5 69 75.4
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 1.9e-21 105.9 105 55.2
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 1.7e-19 99.4 64 75.0
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 5.1e-19 97.8 64 76.6
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 3.5e-12 75.1 54 59.3
MBI15_g08395_MAGBIO Magnolia biondii HOM05D007008 ORTHO05D008622 4.8e-09 64.7 34 88.2
CsaV3_2G032520 Cucumis sativus L. HOM05D000653 ORTHO05D002177 1.1e-08 63.5 38 78.9
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 4.0e-08 61.6 40 70.0
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 1.5e-07 59.7 43 65.1
arahy.Tifrunner.gnm1.ann1.6H1017 Arachis hypogaea HOM05D007008 ORTHO05D008622 3.4e-07 58.5 80 42.5
A10p26800 Brassica napus HOM05D007008 ORTHO05D008622 8.4e-06 53.9 36 69.4


User provided reference genes

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