Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 1.7e-96 355.9 167 100.0
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 3.0e-93 345.1 167 95.8
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 3.9e-93 344.7 167 95.2
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 6.6e-93 344.0 167 96.4
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 7.8e-86 320.5 167 87.4
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 3.9e-85 318.2 167 86.8
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 1.5e-84 316.2 167 84.4
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 1.6e-83 312.8 167 84.4
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 3.4e-81 305.1 167 82.6
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 9.9e-81 303.5 167 80.8
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 3.8e-80 301.6 167 79.6
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 4.9e-80 301.2 167 80.8
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 4.9e-80 301.2 167 79.0
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 8.4e-80 300.4 167 81.4
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 4.1e-79 298.1 166 77.7
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 5.4e-79 297.7 167 79.0
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 1.2e-78 296.6 167 79.0
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 1.2e-78 296.6 167 79.0
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 3.0e-77 292.0 167 77.2
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 3.0e-77 292.0 167 79.0
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 5.1e-77 291.2 167 76.6
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 1.1e-76 290.0 167 78.4
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 1.5e-76 289.7 167 78.4
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 1.9e-76 289.3 167 78.4
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 2.5e-76 288.9 167 78.4
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 4.3e-76 288.1 164 75.6
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 5.6e-76 287.7 167 79.0
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 5.6e-76 287.7 167 79.0
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 5.6e-76 287.7 167 79.0
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 5.6e-76 287.7 167 77.2
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 2.1e-75 285.8 167 74.3
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 2.8e-75 285.4 167 75.4
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 1.1e-74 283.5 164 75.0
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 1.1e-74 283.5 166 74.7
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 1.4e-74 283.1 167 76.0
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 1.8e-74 282.7 167 74.9
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 4.0e-74 281.6 166 77.7
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 4.4e-73 278.1 167 73.7
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 4.4e-73 278.1 167 73.7
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 7.6e-73 277.3 167 74.3
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 9.9e-73 276.9 167 72.5
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 2.2e-72 275.8 167 73.7
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 2.9e-72 275.4 167 74.9
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 1.1e-71 273.5 167 75.4
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 1.1e-71 273.5 167 74.9
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 1.1e-71 273.5 164 72.6
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 1.1e-71 273.5 167 71.9
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 2.4e-71 272.3 167 73.7
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 3.2e-71 271.9 167 70.7
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 3.2e-71 271.9 167 71.9
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 4.2e-71 271.6 168 72.0
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 4.2e-71 271.6 168 72.0
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 5.4e-71 271.2 167 74.9
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 5.4e-71 271.2 174 70.1
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 1.2e-70 270.0 168 71.4
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 1.2e-70 270.0 168 72.0
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 1.2e-70 270.0 168 72.0
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 2.7e-70 268.9 168 71.4
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 2.7e-70 268.9 167 70.1
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 7.8e-70 267.3 168 71.4
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 7.8e-70 267.3 168 71.4
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 1.0e-69 266.9 168 71.4
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 1.0e-69 266.9 168 70.8
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.3e-69 266.5 167 72.5
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 1.7e-69 266.2 168 71.4
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 1.7e-69 266.2 167 68.9
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 2.3e-69 265.8 168 70.8
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 2.3e-69 265.8 166 71.1
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 3.0e-69 265.4 168 70.2
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 6.6e-69 264.2 167 68.3
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 1.1e-68 263.5 203 62.1
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 2.5e-68 262.3 167 69.5
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 2.5e-68 262.3 167 68.3
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 3.3e-68 261.9 178 68.0
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 4.3e-68 261.5 167 68.3
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 5.6e-68 261.2 189 67.2
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 5.6e-68 261.2 167 70.7
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 7.3e-68 260.8 164 70.7
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 1.6e-67 259.6 167 70.1
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 2.8e-67 258.8 168 71.4
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 4.8e-67 258.1 166 68.1
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 6.2e-67 257.7 219 57.5
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 6.2e-67 257.7 167 70.1
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 6.2e-67 257.7 167 70.1
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.4e-66 256.5 166 67.5
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 1.8e-66 256.1 166 67.5
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 1.8e-66 256.1 164 67.7
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 4.0e-66 255.0 167 68.3
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 1.2e-65 253.4 167 68.9
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 1.5e-65 253.1 164 69.5
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 6.4e-64 247.7 179 63.1
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 1.9e-63 246.1 168 69.0
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 4.2e-63 245.0 159 66.0
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 7.1e-63 244.2 167 63.5
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 3.0e-61 238.8 167 65.3
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 6.7e-61 237.7 137 75.2
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 8.7e-61 237.3 167 61.7
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 1.3e-59 233.4 189 57.7
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 8.1e-59 230.7 167 58.7
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 2.6e-57 225.7 164 61.0
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 4.5e-57 224.9 167 58.1
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 5.8e-57 224.6 189 55.6
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 1.4e-55 219.9 164 59.1
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 3.2e-55 218.8 166 57.8
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 1.2e-54 216.9 166 59.0
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 6.0e-54 214.5 149 65.1
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 1.3e-53 213.4 166 61.4
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.0e-53 212.2 175 54.9
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 6.7e-53 211.1 127 70.9
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.5e-52 209.1 126 71.4
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 5.6e-52 208.0 136 66.9
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 4.0e-50 201.8 167 59.9
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 2.0e-49 199.5 167 52.1
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 1.9e-47 193.0 164 57.3
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.9e-47 193.0 176 49.4
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 7.1e-47 191.0 165 52.1
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 6.0e-46 188.0 167 53.3
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 1.5e-44 183.3 164 52.4
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 5.7e-44 181.4 97 81.4
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 5.7e-44 181.4 97 81.4
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 2.2e-43 179.5 177 51.4
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 2.8e-43 179.1 168 51.8
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 4.8e-43 178.3 116 67.2
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 2.4e-42 176.0 122 63.1
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 3.1e-42 175.6 167 52.1
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.9e-41 171.4 167 49.1
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.0e-40 168.3 133 54.9
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 6.5e-40 167.9 163 49.7
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.2e-39 165.6 150 56.0
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 5.5e-39 164.9 139 56.1
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 7.2e-39 164.5 164 48.8
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 1.6e-38 163.3 130 60.8
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 4.6e-38 161.8 98 71.4
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 8.2e-35 151.0 104 63.5
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 1.5e-33 146.7 127 50.4
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 9.4e-31 137.5 183 44.3
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 4.7e-30 135.2 97 61.9
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 5.7e-28 128.3 103 58.3
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 3.7e-27 125.6 80 66.2
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 1.0e-24 117.5 112 50.9
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 5.5e-23 111.7 126 41.3
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 9.4e-23 110.9 165 37.6
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.2e-22 110.5 165 38.2
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 2.3e-21 106.3 88 55.7
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.5e-20 103.6 89 52.8
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 2.2e-16 89.7 167 31.7
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 8.8e-13 77.8 64 50.0
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 8.8e-13 77.8 64 50.0
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.0e-12 76.6 67 47.8
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 4.4e-12 75.5 41 82.9
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 7.5e-12 74.7 57 52.6
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 2.8e-11 72.8 69 49.3
MCO11G136 Micromonas commoda HOM05D004267 ORTHO05D005267 3.7e-11 72.4 167 30.5
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 8.2e-11 71.2 112 34.8
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.1e-10 70.9 64 46.9
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.4e-10 70.5 57 50.9
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.4e-10 69.7 64 45.3
COL.COLO4_30599 Corchorus olitorius HOM05D004267 ORTHO05D044750 7.0e-10 68.2 134 30.6
Thecc.06G107200 Theobroma cacao HOM05D004267 ORTHO05D044750 1.2e-09 67.4 127 33.9
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 1.6e-09 67.0 47 68.1
Haze_00845 Corylus avellana HOM05D021883 ORTHO05D034098 4.5e-09 65.5 139 29.5
Atru.chr2.3707 Acer truncatum HOM05D004267 ORTHO05D000004 2.9e-08 62.8 32 78.1
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 2.9e-08 62.8 39 74.4
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 2.5e-07 59.7 55 49.1
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 5.5e-07 58.5 44 56.8


User provided reference genes

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