Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1549.6 777 100.0
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1345.1 717 93.9
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1321.6 684 96.8
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1314.7 717 91.2
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1301.6 717 89.3
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1295.0 717 90.2
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1289.2 718 89.8
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1288.5 717 89.1
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1282.3 718 89.3
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1277.7 717 89.3
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1271.5 712 89.0
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1271.5 714 88.9
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1266.1 717 88.4
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1259.6 717 87.4
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1259.6 717 86.5
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1258.4 717 87.6
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1258.0 717 88.6
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1255.4 717 86.1
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1254.6 711 87.2
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1251.5 718 86.6
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1247.6 715 86.0
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1247.3 718 85.9
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1245.7 716 86.3
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1245.0 747 80.2
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1244.6 703 87.2
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1244.2 720 85.7
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1241.9 713 85.8
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1240.3 717 86.1
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1239.9 718 85.8
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1237.2 717 86.1
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1236.5 708 85.9
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1236.5 717 85.5
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1235.7 712 85.5
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1234.9 706 86.0
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1233.8 718 84.8
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1233.8 718 84.7
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1233.8 718 84.7
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1233.0 722 84.9
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1232.6 717 85.2
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1229.9 713 85.3
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1228.8 709 86.3
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1227.6 767 80.3
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1226.5 714 85.0
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1219.1 720 84.4
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1217.6 718 83.4
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1215.3 706 85.1
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1213.7 713 84.3
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1213.0 720 84.0
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1212.2 705 85.0
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1211.1 718 83.1
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1210.3 719 84.4
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1210.3 719 84.3
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1209.1 718 83.6
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1209.1 703 85.8
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1208.0 719 84.3
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1205.7 703 85.6
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1203.7 719 83.9
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1200.3 692 85.4
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1198.7 732 82.8
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1198.7 700 85.9
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1198.3 714 82.9
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1197.6 700 84.1
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1196.4 718 82.5
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1193.7 695 84.3
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1192.9 739 80.9
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1191.8 699 84.1
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1190.3 701 84.5
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1189.9 695 84.0
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1188.7 703 83.1
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1187.2 700 83.9
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1185.6 700 84.7
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1184.5 695 84.3
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1182.2 693 85.3
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1181.4 692 85.4
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1180.2 693 84.6
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1180.2 631 93.7
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1178.3 700 83.7
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1177.2 695 83.5
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1176.4 692 83.8
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1174.1 675 85.5
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1172.5 699 82.5
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1170.6 693 82.5
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1168.7 695 82.9
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1167.5 698 82.5
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1167.1 712 82.6
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1165.2 695 83.3
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1164.1 694 83.6
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1163.7 713 81.5
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1163.3 686 83.7
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1162.9 695 82.9
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1162.9 695 82.9
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1162.9 717 83.5
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1162.9 689 84.9
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1160.6 694 83.4
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1160.6 691 83.2
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1159.8 695 83.6
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1158.3 699 82.0
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1157.9 695 83.5
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1157.5 703 81.5
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1157.5 703 81.5
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1157.5 703 81.5
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1157.5 703 81.5
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1157.5 692 83.1
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1156.7 714 81.1
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1154.0 692 82.7
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1154.0 700 81.0
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1153.3 691 82.9
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1153.3 692 82.8
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1151.7 691 82.8
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1149.0 691 82.3
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1147.1 695 82.7
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1145.2 693 82.0
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1141.3 689 83.2
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1140.9 697 80.8
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1139.4 699 82.0
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1134.8 687 82.5
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1133.6 694 82.3
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1133.2 687 82.1
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1130.5 728 78.6
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1128.6 692 80.8
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1125.5 751 75.2
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1124.4 735 78.0
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1122.1 693 80.4
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1118.6 692 81.5
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1114.4 748 76.7
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1114.0 714 78.7
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1113.6 715 77.8
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1110.5 699 80.0
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1109.4 710 81.0
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1102.0 696 78.7
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1098.6 633 85.8
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1097.4 690 80.1
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1094.3 697 74.3
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1087.0 696 77.3
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1080.9 691 77.4
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 5.3e-312 1074.7 733 75.4
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 5.3e-310 1067.4 633 83.6
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 1.4e-307 1059.3 634 82.2
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.9e-307 1058.9 692 76.3
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 2.5e-304 1048.5 759 71.5
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 4.0e-302 1041.2 692 75.6
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 5.0e-268 927.9 551 84.6
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 3.7e-263 911.8 686 70.3
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 2.6e-248 862.4 510 78.6
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 4.5e-237 825.1 464 83.6
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.4e-222 776.9 700 62.4
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 3.2e-222 775.8 453 81.7
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 2.5e-211 739.6 393 89.1
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 1.0e-143 515.0 359 77.7
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.2e-142 509.6 590 51.5
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 4.2e-142 509.6 361 68.4
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 3.0e-111 407.1 317 71.6
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 6.8e-100 369.4 396 53.5
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 3.1e-92 344.0 180 88.3
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.4e-89 335.1 581 44.9
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 2.3e-71 274.6 152 85.5
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 6.2e-61 240.0 140 80.0
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.0e-58 232.6 156 75.6
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 7.4e-46 189.9 163 58.9
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 2.6e-35 154.8 477 29.1
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 3.0e-31 141.4 465 28.2
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 8.2e-29 133.3 76 82.9
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 1.8e-28 132.1 74 82.4
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 7.0e-28 130.2 455 26.6
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 8.5e-26 123.2 470 27.4
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 1.1e-25 122.9 68 86.8
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 9.4e-25 119.8 96 65.6
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 1.4e-23 115.9 457 28.4
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 2.7e-16 91.7 83 55.4
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 1.4e-15 89.4 220 32.3
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 5.2e-15 87.4 266 27.1
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-07 62.8 70 47.1
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 9.8e-06 56.6 38 73.7


User provided reference genes

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