Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 1.3e-120 436.4 222 100.0
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 4.2e-111 404.8 222 91.4
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 6.9e-106 387.5 220 88.2
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 2.6e-105 385.6 220 87.7
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 1.4e-95 353.2 221 77.8
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 1.9e-95 352.8 220 77.3
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 2.0e-92 342.8 221 72.4
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 1.1e-90 337.0 220 71.8
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 1.8e-90 336.3 220 74.1
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 6.9e-90 334.3 221 74.7
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 9.1e-90 334.0 221 71.0
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 1.2e-89 333.6 220 71.8
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 1.2e-89 333.6 213 74.6
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 3.4e-89 332.0 221 71.9
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 5.9e-89 331.3 220 72.7
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 4.2e-87 325.1 220 71.8
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 9.4e-87 323.9 222 69.4
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 1.2e-86 323.6 217 71.0
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 1.6e-86 323.2 213 70.0
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.1e-86 322.8 219 71.2
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.1e-86 322.8 219 71.2
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 2.1e-86 322.8 221 70.1
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 2.7e-86 322.4 219 68.9
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 3.6e-86 322.0 220 69.5
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 6.1e-86 321.2 220 70.0
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 7.9e-86 320.9 219 69.9
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 7.9e-86 320.9 220 69.1
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 1.0e-85 320.5 219 70.8
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.0e-85 320.5 219 70.8
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 1.0e-85 320.5 220 70.0
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 1.8e-85 319.7 221 69.2
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 3.0e-85 318.9 221 68.8
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 5.1e-85 318.2 221 67.9
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 5.1e-85 318.2 220 68.2
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 8.8e-85 317.4 220 69.1
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.1e-84 317.0 221 68.3
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 2.0e-84 316.2 216 68.5
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 4.4e-84 315.1 218 69.3
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 2.2e-83 312.8 221 69.7
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 2.8e-83 312.4 220 69.1
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 2.8e-83 312.4 221 67.9
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 3.1e-82 308.9 221 67.4
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 7.0e-82 307.8 222 67.6
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 7.0e-82 307.8 213 67.6
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 9.1e-82 307.4 220 66.4
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 1.2e-81 307.0 216 68.5
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 1.6e-81 306.6 216 67.6
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 1.6e-81 306.6 222 66.2
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 3.5e-81 305.4 213 67.1
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 4.5e-81 305.1 213 66.7
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 5.9e-81 304.7 221 66.1
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 7.7e-81 304.3 221 69.7
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.0e-80 303.9 221 62.9
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 1.0e-80 303.9 214 67.3
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 1.0e-80 303.9 219 68.0
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 1.0e-80 303.9 220 68.6
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 2.2e-80 302.8 220 65.9
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 3.8e-80 302.0 221 62.0
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 6.5e-80 301.2 220 65.9
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 6.5e-80 301.2 220 65.9
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 6.5e-80 301.2 192 71.9
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 1.9e-79 299.7 212 66.0
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.9e-79 299.7 221 65.6
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 4.2e-79 298.5 220 65.5
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 4.2e-79 298.5 220 66.4
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.2e-78 297.0 217 65.0
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 1.6e-78 296.6 220 62.3
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.6e-78 296.6 220 63.2
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 2.1e-78 296.2 221 63.8
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.1e-78 296.2 217 65.4
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 2.1e-78 296.2 220 64.5
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 6.1e-78 294.7 217 64.5
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.0e-77 293.9 221 64.7
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 1.4e-77 293.5 216 64.8
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 4.0e-77 292.0 222 63.5
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 5.2e-77 291.6 221 62.4
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 5.2e-77 291.6 217 64.5
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.1e-76 290.4 217 64.1
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 1.5e-76 290.0 221 62.4
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 2.0e-76 289.7 247 59.9
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.0e-76 289.7 217 63.1
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 2.6e-76 289.3 224 62.1
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 4.4e-76 288.5 217 63.1
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 9.7e-76 287.3 196 72.4
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 2.2e-75 286.2 217 63.1
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 2.8e-75 285.8 217 62.7
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 2.8e-75 285.8 217 62.7
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 3.7e-75 285.4 197 68.5
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 6.3e-75 284.6 215 68.8
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.8e-74 283.1 216 61.1
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 2.4e-74 282.7 217 61.8
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 2.4e-74 282.7 217 61.8
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 4.1e-74 282.0 216 60.6
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 7.0e-74 281.2 217 62.2
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 9.1e-74 280.8 280 55.7
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.6e-73 280.0 214 61.7
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 2.0e-73 279.6 251 57.0
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 5.9e-73 278.1 216 60.2
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 1.0e-72 277.3 215 61.9
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.3e-72 276.9 214 61.2
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 1.3e-72 276.9 217 60.4
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 1.3e-72 276.9 217 60.4
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 1.3e-72 276.9 220 58.6
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 3.8e-72 275.4 217 59.9
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 3.8e-72 275.4 217 59.9
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 3.8e-72 275.4 217 59.9
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 1.9e-71 273.1 220 61.8
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.9e-71 273.1 207 63.3
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.9e-71 273.1 207 63.3
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.5e-71 272.7 211 62.6
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 3.2e-71 272.3 219 62.6
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 7.2e-71 271.2 222 63.1
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 1.2e-70 270.4 212 60.4
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 2.7e-70 269.2 186 69.4
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 3.6e-70 268.9 217 59.0
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 2.3e-69 266.2 185 69.2
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 3.0e-69 265.8 217 58.1
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.0e-69 265.8 220 58.2
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 4.0e-69 265.4 160 75.0
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.4e-68 262.3 246 54.9
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 1.4e-66 256.9 196 62.2
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 3.5e-65 252.3 219 57.5
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 2.2e-64 249.6 222 55.0
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 2.2e-64 249.6 222 55.0
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 1.5e-63 246.9 192 60.4
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 2.5e-63 246.1 188 60.1
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 1.6e-62 243.4 205 55.1
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 3.0e-61 239.2 207 56.0
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 5.2e-61 238.4 199 54.3
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 8.8e-61 237.7 157 69.4
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 1.6e-57 226.9 232 53.0
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.3e-56 223.0 220 50.0
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 5.6e-55 218.4 212 48.6
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 6.1e-54 214.9 210 51.0
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 8.0e-54 214.5 147 70.1
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 3.0e-53 212.6 174 62.6
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 3.4e-52 209.1 147 68.0
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 3.7e-51 205.7 172 59.3
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 2.7e-49 199.5 120 78.3
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 5.0e-48 195.3 219 49.8
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.5e-47 193.0 220 46.4
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 3.3e-47 192.6 213 43.7
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 6.2e-46 188.3 120 71.7
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 1.2e-44 184.1 213 45.1
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 3.7e-43 179.1 146 54.8
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 1.9e-39 166.8 187 42.2
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 6.8e-37 158.3 118 64.4
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 1.6e-30 137.1 86 79.1
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 2.8e-30 136.3 154 42.9
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.2e-27 126.7 124 50.8
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 6.4e-27 125.2 209 34.4
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 4.1e-26 122.5 88 69.3
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 5.2e-21 105.5 73 64.4
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.1e-18 97.8 80 55.0
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.9e-18 97.1 148 40.5
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.9e-18 97.1 148 40.5
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 1.3e-16 90.9 74 56.8
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 5.1e-16 89.0 71 59.2
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 2.1e-14 83.6 62 71.0
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 2.7e-09 66.6 47 59.6
arahy.Tifrunner.gnm1.ann1.5FL4AU Arachis hypogaea HOM05D000229 ORTHO05D005305 7.9e-09 65.1 35 82.9
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 8.7e-08 61.6 59 50.8
CAN.G275.19 Capsicum annuum HOM05D001742 ORTHO05D001689 4.8e-06 55.8 221 26.2


User provided reference genes

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