Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G010600 Phaseolus vulgaris HOM05D006583 ORTHO05D008134 3.7e-123 444.9 226 100.0
Glyma.14G070300 Glycine max HOM05D006583 ORTHO05D008134 8.1e-62 241.1 212 59.0
arahy.Tifrunner.gnm1.ann1.IRD816 Arachis hypogaea HOM05D006583 ORTHO05D008134 1.3e-59 233.8 213 55.4
Glyma.06G028400 Glycine max HOM05D006583 ORTHO05D008134 2.9e-59 232.6 213 55.4
Glyma.04G028200 Glycine max HOM05D006583 ORTHO05D008134 3.8e-59 232.3 212 55.2
GSVIVG01009797001 Vitis vinifera HOM05D006583 ORTHO05D008134 1.6e-57 226.9 213 54.0
Manes.18G019300 Manihot esculenta HOM05D006583 ORTHO05D008134 6.0e-57 224.9 213 52.6
VMungo1309G1713 Vigna mungo HOM05D006583 ORTHO05D008134 6.0e-57 224.9 213 54.0
Phvul.009G013100 Phaseolus vulgaris HOM05D006583 ORTHO05D008134 7.9e-57 224.6 213 54.0
Gohir.A01G113700 Gossypium hirsutum HOM05D006583 ORTHO05D008134 1.0e-56 224.2 213 53.5
Lalb_Chr23g0266401 Lupinus albus HOM05D006583 ORTHO05D008134 1.0e-56 224.2 213 54.5
Gohir.D01G101500 Gossypium hirsutum HOM05D006583 ORTHO05D008134 1.3e-56 223.8 213 53.1
Ciclev10002444m.g Citrus clementina HOM05D006583 ORTHO05D008134 2.3e-56 223.0 213 53.1
Duzib041G0648 Durio zibethinus HOM05D006583 ORTHO05D008134 2.3e-56 223.0 213 53.5
Gorai.002G126000 Gossypium raimondii HOM05D006583 ORTHO05D008134 6.7e-56 221.5 213 52.6
Lj5g0011733 Lotus japonicus HOM05D006583 ORTHO05D008134 8.7e-56 221.1 213 54.0
Actinidia15372 Actinidia chinensis HOM05D006583 ORTHO05D008134 1.1e-55 220.7 212 52.4
CSS0045478 Camellia sinensis var. sinensis HOM05D006583 ORTHO05D008134 1.9e-55 219.9 213 52.1
TAR376G0698 Trochodendron aralioides HOM05D006583 ORTHO05D008134 2.5e-55 219.5 213 52.1
Thecc.08G035300 Theobroma cacao HOM05D006583 ORTHO05D008134 3.3e-55 219.2 213 51.2
Potri.002G029700 Populus trichocarpa HOM05D006583 ORTHO05D008134 4.3e-55 218.8 213 51.2
TPR.G13692 Trifolium pratense HOM05D006583 ORTHO05D008134 4.3e-55 218.8 213 53.1
Duzib093G0899 Durio zibethinus HOM05D006583 ORTHO05D008134 1.3e-54 217.2 213 51.6
Hma1.2p1_0469F.1_g158810 Hydrangea macrophylla HOM05D006583 ORTHO05D008134 1.3e-54 217.2 213 53.1
Psat6g006360 Pisum sativum HOM05D006583 ORTHO05D008134 1.4e-53 213.8 213 52.1
Dinv31797 Davidia involucrata HOM05D006583 ORTHO05D008134 1.8e-53 213.4 213 51.2
Lalb_Chr11g0062151 Lupinus albus HOM05D006583 ORTHO05D008134 1.8e-53 213.4 213 52.1
QL02p010374 Quercus lobata HOM05D006583 ORTHO05D008134 9.0e-53 211.1 213 49.8
RcHm_v2.0_Chr6g0301961 Rosa chinensis HOM05D006583 ORTHO05D008134 9.0e-53 211.1 213 50.2
Aqoxy5G01518 Aquilegia oxysepala HOM05D006583 ORTHO05D008134 1.5e-52 210.3 212 52.4
CANSAT25G2309 Cannabis sativa HOM05D006583 ORTHO05D008134 2.6e-52 209.5 213 48.8
Sabra02G0023600 Salix brachista HOM05D001685 ORTHO05D008134 2.6e-52 209.5 200 52.0
Medtr1g019870 Medicago truncatula HOM05D006583 ORTHO05D008134 3.4e-52 209.1 213 51.2
Rhsim06G0027600 Rhododendron simsii HOM05D006583 ORTHO05D008134 4.5e-52 208.8 213 49.8
Dinv39470 Davidia involucrata HOM05D006583 ORTHO05D008134 5.8e-52 208.4 227 49.3
PGR031G1646 Punica granatum HOM05D006583 ORTHO05D008134 5.8e-52 208.4 213 48.4
arahy.Tifrunner.gnm1.ann1.F32EHA Arachis hypogaea HOM05D006583 ORTHO05D008134 7.6e-52 208.0 177 57.1
FvH4_2g38860 Fragaria vesca HOM05D006583 ORTHO05D008134 2.5e-50 203.0 213 49.3
TAR068G0005 Trochodendron aralioides HOM05D000284 ORTHO05D008134 3.2e-50 202.6 200 51.5
CsaV3_3G045530 Cucumis sativus L. HOM05D006583 ORTHO05D008134 4.2e-50 202.2 213 47.9
CDE06G0069 Ceratophyllum demersum HOM05D006583 ORTHO05D008134 1.2e-49 200.7 213 49.8
FAN20G0107 Fragaria x ananassa HOM05D006583 ORTHO05D008134 1.2e-49 200.7 213 49.3
MD15G1020700 Malus domestica HOM05D006583 ORTHO05D008134 1.2e-49 200.7 213 48.4
MELO3C003787.2 Cucumis melo HOM05D006583 ORTHO05D008134 1.6e-49 200.3 213 47.4
Haze_22568 Corylus avellana HOM05D006583 ORTHO05D008134 2.7e-49 199.5 202 51.0
CiPaw.07G155600 Carya illinoinensis HOM05D006583 ORTHO05D008134 3.5e-49 199.1 200 49.5
FAN15G3353 Fragaria x ananassa HOM05D006583 ORTHO05D008134 3.5e-49 199.1 195 51.8
Atru.chr13.382 Acer truncatum HOM05D001685 ORTHO05D009095 4.6e-49 198.7 211 49.8
QL02p010412 Quercus lobata HOM05D006583 ORTHO05D008134 1.0e-48 197.6 237 44.7
Cc10_g02290 Coffea canephora HOM05D006583 ORTHO05D008134 1.3e-48 197.2 213 46.5
MD08G1023000 Malus domestica HOM05D006583 ORTHO05D008134 3.0e-48 196.1 213 46.5
Sabra05G0179700 Salix brachista HOM05D006583 ORTHO05D008134 3.9e-48 195.7 213 48.4
vmacro21691 Vaccinium macrocarpon HOM05D006583 ORTHO05D008134 3.9e-48 195.7 232 46.1
Ca_13385_v3 Cicer arietinum L. HOM05D006583 ORTHO05D008134 5.1e-48 195.3 191 53.9
PSO541G0494 Papaver somniferum HOM05D006583 ORTHO05D008134 5.1e-48 195.3 213 46.5
TWI56G0908 Tripterygium wilfordii HOM05D006583 ORTHO05D008134 5.1e-48 195.3 222 45.5
Sopen04g034500 Solanum pennellii HOM05D006583 ORTHO05D008134 8.7e-48 194.5 213 48.8
TWI36G1724 Tripterygium wilfordii HOM05D006583 ORTHO05D008134 8.7e-48 194.5 213 46.0
Sed0026661 Sechium edule HOM05D004346 ORTHO05D009095 1.1e-47 194.1 200 47.5
EL10Ac1g00579 Beta vulgaris HOM05D006583 ORTHO05D008134 1.9e-47 193.4 213 46.0
Eucgr.F01851 Eucalyptus grandis HOM05D006583 ORTHO05D008134 4.3e-47 192.2 213 46.0
HanXRQChr05g0149481 Helianthus annuus HOM05D006583 ORTHO05D008134 4.3e-47 192.2 218 48.2
PSO675G6535 Papaver somniferum HOM05D006583 ORTHO05D008134 5.7e-47 191.8 213 45.5
THA.LOC104798636 Tarenaya hassleriana HOM05D006583 ORTHO05D008134 3.7e-46 189.1 214 43.5
CAN.G851.29 Capsicum annuum HOM05D006583 ORTHO05D008134 6.3e-46 188.3 195 50.8
MSTRG.1241 Avicennia marina HOM05D006583 ORTHO05D008134 8.2e-46 188.0 213 45.1
Os01g0775600 Oryza sativa ssp. japonica HOM05D006583 ORTHO05D008134 8.2e-46 188.0 213 45.1
DCAR_009954 Daucus carota HOM05D006583 ORTHO05D008134 2.4e-45 186.4 195 49.7
Solyc04g080900.3 Solanum lycopersicum HOM05D001685 ORTHO05D009095 2.4e-45 186.4 195 50.3
PGSC0003DMG401003705 Solanum tuberosum HOM05D006583 ORTHO05D008134 2.4e-45 186.4 195 50.8
HPP92_015882 Vanilla planifolia HOM05D006583 ORTHO05D008134 3.1e-45 186.0 214 47.7
Lj4A32T64 Lonicera japonica HOM05D006583 ORTHO05D008134 5.3e-45 185.3 187 51.3
ATR0665G303 Amborella trichopoda HOM05D006583 ORTHO05D008134 6.9e-45 184.9 213 45.5
Migut.C00777 Erythranthe guttata HOM05D001685 ORTHO05D009095 2.0e-44 183.3 195 47.2
SEGI_39793 Sequoiadendron giganteum HOM05D006583 ORTHO05D008134 4.5e-44 182.2 213 43.7
CDE07G0605 Ceratophyllum demersum HOM05D006583 ORTHO05D008134 7.7e-44 181.4 213 46.9
Sp1g04870 Schrenkiella parvula HOM05D006583 ORTHO05D008134 7.7e-44 181.4 209 44.0
Potri.005G233000 Populus trichocarpa HOM05D006583 ORTHO05D008134 1.0e-43 181.0 195 48.2
HanXRQChr03g0069701 Helianthus annuus HOM05D006583 ORTHO05D008134 1.3e-43 180.6 214 45.3
Peaxi162Scf00189g00133 Petunia axillaris HOM05D001685 ORTHO05D009095 1.7e-43 180.3 195 48.2
COL.COLO4_26225 Corchorus olitorius HOM05D006583 ORTHO05D008134 8.5e-43 177.9 212 43.4
Prupe.1G372300 Prunus persica HOM05D006583 ORTHO05D008134 8.5e-43 177.9 171 51.5
Hund26881 Selenicereus undatus HOM05D006583 ORTHO05D008134 1.1e-42 177.6 200 45.0
AL1G16010 Arabidopsis lyrata HOM05D006583 ORTHO05D008134 1.4e-42 177.2 209 41.6
Ah.02g110970 Amaranthus hybridus HOM05D006583 ORTHO05D008134 1.9e-42 176.8 212 43.4
Thhalv10008762m.g Eutrema salsugineum HOM05D006583 ORTHO05D008134 1.9e-42 176.8 209 42.6
FAN27G2561 Fragaria x ananassa HOM05D001685 ORTHO05D009095 7.2e-42 174.9 189 48.1
ECA246G3248 Erigeron canadensis HOM05D006583 ORTHO05D008134 1.2e-41 174.1 213 46.0
BcaB03g13442 Brassica carinata HOM05D006583 ORTHO05D008134 1.6e-41 173.7 209 40.2
AT1G06060 Arabidopsis thaliana HOM05D006583 ORTHO05D008134 2.1e-41 173.3 209 40.7
CARHR005580 Cardamine hirsuta HOM05D006583 ORTHO05D008134 6.1e-41 171.8 191 46.1
C08p02370 Brassica napus HOM05D006583 ORTHO05D008134 1.4e-40 170.6 209 41.1
BolC8t47029H Brassica oleracea HOM05D006583 ORTHO05D008134 1.4e-40 170.6 209 41.1
Carub.0001s0539 Capsella rubella HOM05D006583 ORTHO05D008134 5.1e-40 168.7 209 40.2
BraA08t35521Z Brassica rapa HOM05D006583 ORTHO05D008134 2.0e-39 166.8 209 39.7
SEGI_23693 Sequoiadendron giganteum HOM05D006583 ORTHO05D008134 2.5e-39 166.4 188 44.7
Pp3c15_18970 Physcomitrium patens HOM05D006583 ORTHO05D008134 5.7e-39 165.2 214 42.5
SGA_v2.0_scaffold201G41378 Striga asiatica HOM05D006583 ORTHO05D008134 9.7e-39 164.5 215 40.9
Pp3c9_8180 Physcomitrium patens HOM05D006583 ORTHO05D008134 2.2e-38 163.3 214 43.0
A08p36140 Brassica napus HOM05D006583 ORTHO05D008134 2.8e-38 162.9 209 39.2
Nitab4.5_0001840g0010 Nicotiana tabacum HOM05D006583 ORTHO05D008134 8.2e-38 161.4 195 45.6
unitig_85.g27214 Utricularia gibba HOM05D006583 ORTHO05D008134 1.1e-37 161.0 210 41.9
SGA_v2.0_scaffold11G05841 Striga asiatica HOM05D006583 ORTHO05D008134 1.4e-37 160.6 195 42.1
Lsat_1_v5_gn_5_25641 Lactuca sativa HOM05D006583 ORTHO05D008134 6.9e-37 158.3 213 42.3
MBI04_g18961_MAGBIO Magnolia biondii HOM05D006583 ORTHO05D008134 9.1e-37 157.9 228 41.7
unitig_578.g16694 Utricularia gibba HOM05D006583 ORTHO05D008134 2.6e-36 156.4 210 40.0
SGA_v2.0_scaffold11G05849 Striga asiatica HOM05D006583 ORTHO05D008134 4.5e-36 155.6 185 42.2
Glyma.17G254300 Glycine max HOM05D006583 ORTHO05D008134 1.0e-35 154.5 162 52.5
Mapoly0001s0037 Marchantia polymorpha HOM05D006583 ORTHO05D008134 3.8e-35 152.5 188 44.1
ClCG05G018650 Citrullus lanatus HOM05D001685 ORTHO05D009095 5.0e-35 152.1 209 40.7
Aa31LG1G8200 Aethionema arabicum HOM05D006583 ORTHO05D008134 7.2e-34 148.3 165 42.4
Zm00001eb369980 Zea mays HOM05D006583 ORTHO05D008134 7.2e-34 148.3 213 38.5
SMO118G0197 Selaginella moellendorffii HOM05D006583 ORTHO05D008134 4.7e-33 145.6 206 38.8
Sc02g0005320 Simmondsia chinensis HOM05D006583 ORTHO05D008134 3.0e-32 142.9 160 48.1
Nitab4.5_0002156g0120 Nicotiana tabacum HOM05D006583 ORTHO05D008134 7.4e-31 138.3 170 44.7
AUR62014454 Chenopodium quinoa HOM05D006583 ORTHO05D008134 8.2e-30 134.8 153 45.8
AUR62034544 Chenopodium quinoa HOM05D006583 ORTHO05D008134 9.1e-29 131.3 153 45.1
SalBow7G0241 Salvia bowleyana HOM05D006583 ORTHO05D008134 2.5e-26 123.2 141 46.8
Actinidia22504 Actinidia chinensis HOM05D006583 ORTHO05D008134 4.8e-14 82.4 69 49.3
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-12 77.8 191 30.4
ECA234G3644 Erigeron canadensis HOM05D006583 ORTHO05D008134 1.2e-12 77.8 180 29.4
unitig_22.g6744 Utricularia gibba HOM05D003178 ORTHO05D003636 5.5e-10 68.9 204 25.0
unitig_8.g3359 Utricularia gibba HOM05D003178 ORTHO05D003636 5.5e-10 68.9 186 25.8
AagrBONN_evm.TU.Sc2ySwM_228.739 Anthoceros agrestis HOM05D006583 ORTHO05D008134 1.6e-09 67.4 87 43.7
CAN.G187.2 Capsicum annuum HOM05D006583 ORTHO05D008134 1.6e-09 67.4 74 47.3
PGSC0003DMG400022428 Solanum tuberosum HOM05D003178 ORTHO05D003636 2.1e-09 67.0 197 24.9
Gohir.D10G023800 Gossypium hirsutum HOM05D003178 ORTHO05D003636 3.6e-09 66.2 207 24.6
PSO210G5949 Papaver somniferum HOM05D003178 ORTHO05D003636 4.7e-09 65.9 207 26.6
CBR_g3123 Chara braunii HOM05D003178 ORTHO05D003636 6.1e-09 65.5 187 25.7
PSO832G0753 Papaver somniferum HOM05D003178 ORTHO05D003636 1.0e-08 64.7 207 26.1
Cc02_g12740 Coffea canephora HOM05D003178 ORTHO05D003636 1.4e-08 64.3 194 25.3
Lalb_Chr15g0089941 Lupinus albus HOM05D003178 ORTHO05D003636 1.4e-08 64.3 162 27.2
TAR627G0927 Trochodendron aralioides HOM05D003178 ORTHO05D003636 1.4e-08 64.3 210 24.3
Gohir.A09G071500 Gossypium hirsutum HOM05D003178 ORTHO05D003636 1.8e-08 63.9 207 24.2
Gorai.006G086200 Gossypium raimondii HOM05D003178 ORTHO05D003636 1.8e-08 63.9 207 24.2
Gohir.A10G023000 Gossypium hirsutum HOM05D003178 ORTHO05D003636 2.3e-08 63.5 207 24.2
Gorai.011G024900 Gossypium raimondii HOM05D003178 ORTHO05D003636 2.3e-08 63.5 207 24.2
HanXRQChr09g0263961 Helianthus annuus HOM05D003178 ORTHO05D003636 2.3e-08 63.5 194 24.2
Lsat_1_v5_gn_7_19480 Lactuca sativa HOM05D003178 ORTHO05D003636 2.3e-08 63.5 209 23.4
HanXRQChr04g0124041 Helianthus annuus HOM05D003178 ORTHO05D003636 3.0e-08 63.2 194 24.2
Oeu046226.1 Olea europaea HOM05D006583 ORTHO05D008134 3.0e-08 63.2 86 44.2
ECA236G3980 Erigeron canadensis HOM05D003178 ORTHO05D003636 4.0e-08 62.8 194 24.2
SalBow7G2401 Salvia bowleyana HOM05D006583 ORTHO05D008134 4.0e-08 62.8 58 41.4
SMO364G0008 Selaginella moellendorffii HOM05D003178 ORTHO05D003636 4.0e-08 62.8 163 29.4
SGA_v2.0_scaffold159G37656 Striga asiatica HOM05D003178 ORTHO05D003636 4.0e-08 62.8 163 26.4
CiPaw.09G053600 Carya illinoinensis HOM05D003178 ORTHO05D003636 5.2e-08 62.4 194 24.7
Duzib160G0311 Durio zibethinus HOM05D003178 ORTHO05D003636 5.2e-08 62.4 207 24.2
Duzib192G1061 Durio zibethinus HOM05D003178 ORTHO05D003636 6.8e-08 62.0 209 23.9
Gohir.D09G071300 Gossypium hirsutum HOM05D003178 ORTHO05D003636 6.8e-08 62.0 207 24.2
Sopen02g023550 Solanum pennellii HOM05D003178 ORTHO05D003636 6.8e-08 62.0 174 26.4
CiPaw.10G045200 Carya illinoinensis HOM05D003178 ORTHO05D003636 2.0e-07 60.5 194 24.2
Psat1g206920 Pisum sativum HOM05D003178 ORTHO05D003636 2.0e-07 60.5 193 24.4
Solyc02g078700.3 Solanum lycopersicum HOM05D003178 ORTHO05D003636 2.0e-07 60.5 146 27.4
Gohir.D06G211400 Gossypium hirsutum HOM05D003178 ORTHO05D003636 2.6e-07 60.1 201 24.4
Gorai.010G254800 Gossypium raimondii HOM05D003178 ORTHO05D003636 2.6e-07 60.1 201 24.4
Duzib235G0426 Durio zibethinus HOM05D003178 ORTHO05D003636 3.4e-07 59.7 207 23.7
arahy.Tifrunner.gnm1.ann1.NDRV14 Arachis hypogaea HOM05D003906 ORTHO05D004776 4.4e-07 59.3 226 25.2
BcaB01g01410 Brassica carinata HOM05D006583 ORTHO05D008134 9.8e-07 58.2 104 33.7
Peaxi162Scf00031g00823 Petunia axillaris HOM05D003178 ORTHO05D003636 9.8e-07 58.2 194 22.7
Phvul.011G000900 Phaseolus vulgaris HOM05D003906 ORTHO05D004776 1.7e-06 57.4 213 25.4
FAN21G3415 Fragaria x ananassa HOM05D003178 ORTHO05D003636 2.8e-06 56.6 187 23.5
Gohir.A06G209600 Gossypium hirsutum HOM05D003178 ORTHO05D003636 3.7e-06 56.2 201 23.9
TAR624G0795 Trochodendron aralioides HOM05D003178 ORTHO05D003636 4.9e-06 55.8 189 24.9
Glyma.12G000900 Glycine max HOM05D003906 ORTHO05D004776 6.3e-06 55.5 227 25.6
Medtr4g032800 Medicago truncatula HOM05D003906 ORTHO05D004776 6.3e-06 55.5 211 26.1


User provided reference genes

Program Settings