Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 1.4e-96 356.3 180 100.0
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 4.9e-94 347.8 183 97.3
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 1.4e-93 346.3 195 92.3
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 1.0e-91 340.1 195 89.7
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 3.9e-91 338.2 195 90.3
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 1.5e-90 336.3 195 88.7
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 1.9e-90 335.9 195 88.7
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 3.3e-90 335.1 195 88.2
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 5.6e-90 334.3 195 87.7
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 5.6e-90 334.3 195 87.7
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 5.6e-90 334.3 195 87.2
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 5.6e-90 334.3 195 89.2
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 5.6e-90 334.3 195 89.2
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 7.4e-90 334.0 195 87.2
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 9.6e-90 333.6 195 87.7
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 9.6e-90 333.6 193 89.6
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 1.3e-89 333.2 195 87.2
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 1.3e-89 333.2 195 87.2
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 1.6e-89 332.8 195 86.7
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 1.6e-89 332.8 195 87.2
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 1.6e-89 332.8 195 87.2
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 2.1e-89 332.4 195 87.2
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 2.1e-89 332.4 195 87.2
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 2.8e-89 332.0 195 87.2
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 2.8e-89 332.0 195 85.6
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 2.8e-89 332.0 195 87.2
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 3.6e-89 331.6 195 87.2
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 3.6e-89 331.6 195 85.6
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 4.8e-89 331.3 195 86.7
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 6.2e-89 330.9 195 86.7
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 6.2e-89 330.9 195 86.7
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 6.2e-89 330.9 195 85.6
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 6.2e-89 330.9 195 86.2
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 8.1e-89 330.5 195 86.2
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 8.1e-89 330.5 195 86.2
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 8.1e-89 330.5 195 86.2
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 1.1e-88 330.1 195 86.2
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 1.4e-88 329.7 195 85.6
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 1.4e-88 329.7 195 86.7
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 1.4e-88 329.7 195 86.7
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 1.4e-88 329.7 195 86.2
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 2.4e-88 328.9 195 86.2
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 2.4e-88 328.9 195 85.6
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 2.4e-88 328.9 195 85.6
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 3.1e-88 328.6 195 85.6
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 5.3e-88 327.8 193 86.0
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 5.3e-88 327.8 193 86.0
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 5.3e-88 327.8 195 84.6
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 5.3e-88 327.8 195 86.2
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 6.9e-88 327.4 195 85.6
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 6.9e-88 327.4 195 85.6
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 9.0e-88 327.0 195 85.6
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 9.0e-88 327.0 193 86.0
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 1.2e-87 326.6 193 85.5
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 1.2e-87 326.6 193 85.5
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 1.2e-87 326.6 195 84.6
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 1.2e-87 326.6 193 85.5
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 1.2e-87 326.6 193 85.5
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 1.2e-87 326.6 195 85.1
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 1.2e-87 326.6 195 85.1
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 2.0e-87 325.9 195 85.1
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 2.0e-87 325.9 195 84.6
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 2.0e-87 325.9 193 85.0
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 2.6e-87 325.5 193 85.0
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 2.6e-87 325.5 195 85.6
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 2.6e-87 325.5 195 85.1
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 2.6e-87 325.5 195 85.1
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 3.4e-87 325.1 193 85.5
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 4.5e-87 324.7 195 84.6
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 4.5e-87 324.7 180 91.7
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 4.5e-87 324.7 199 83.4
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 4.5e-87 324.7 195 85.1
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 4.5e-87 324.7 195 85.1
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 4.5e-87 324.7 195 85.1
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 5.8e-87 324.3 196 85.2
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 7.6e-87 323.9 195 84.6
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.3e-86 323.2 195 84.6
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 1.7e-86 322.8 186 88.2
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.7e-86 322.8 195 83.6
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.7e-86 322.8 195 83.6
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 2.2e-86 322.4 189 86.2
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 2.9e-86 322.0 195 84.6
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 8.4e-86 320.5 189 86.2
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 1.9e-85 319.3 187 86.6
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.4e-85 318.9 195 83.1
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 2.4e-85 318.9 195 82.6
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 5.5e-85 317.8 187 86.1
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 7.1e-85 317.4 189 85.2
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 9.3e-85 317.0 186 85.5
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 1.2e-84 316.6 186 86.0
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 1.2e-84 316.6 188 85.6
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 1.6e-84 316.2 187 85.6
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 2.1e-84 315.8 186 85.5
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 3.5e-84 315.1 185 86.5
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 3.5e-84 315.1 186 85.5
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 3.5e-84 315.1 185 85.9
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 6.0e-84 314.3 185 85.4
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 6.0e-84 314.3 185 85.4
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 6.0e-84 314.3 185 85.4
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 6.0e-84 314.3 186 85.5
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 1.0e-83 313.5 185 85.4
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 1.3e-83 313.2 185 84.9
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 1.8e-83 312.8 185 85.4
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 1.8e-83 312.8 185 85.4
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 2.3e-83 312.4 185 85.4
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 3.9e-83 311.6 195 81.0
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 7.4e-82 307.4 195 80.0
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 2.1e-81 305.8 195 82.1
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 4.8e-81 304.7 218 73.9
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 4.0e-80 301.6 216 74.5
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 5.3e-80 301.2 195 79.5
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 5.8e-79 297.7 226 70.8
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 2.2e-78 295.8 157 92.4
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 1.4e-77 293.1 195 75.9
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 6.0e-76 287.7 194 73.2
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 2.2e-70 269.2 195 75.4
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 2.5e-69 265.8 195 73.3
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 2.5e-69 265.8 194 73.7
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 3.2e-69 265.4 152 86.2
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 1.6e-68 263.1 195 73.3
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 1.3e-67 260.0 195 72.3
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 3.0e-67 258.8 136 93.4
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 7.4e-66 254.2 186 74.2
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 7.4e-66 254.2 186 74.2
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 4.8e-65 251.5 186 73.7
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 3.4e-63 245.4 150 84.7
Pp3c19_5830 Physcomitrium patens HOM05D004575 ORTHO05D005774 1.4e-61 240.0 142 82.4
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 2.7e-60 235.7 195 65.1
MBI10_g16410_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 6.7e-59 231.1 180 68.3
MBI19_g38854_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 7.7e-55 217.6 128 88.3
MBI15_g16628_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 5.0e-54 214.9 123 87.8
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 1.1e-50 203.8 181 57.5
BcaB08g36156 Brassica carinata HOM05D004575 ORTHO05D005774 8.2e-49 197.6 171 65.5
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 1.8e-48 196.4 124 81.5
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 7.7e-47 191.0 134 73.9
Actinidia04286 Actinidia chinensis HOM05D004575 ORTHO05D005774 2.3e-43 179.5 93 96.8
PRCOL_00004142 Prasinoderma coloniale HOM05D004575 ORTHO05D005774 2.4e-40 169.5 146 57.5
MBI15_g43789_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 4.5e-39 165.2 123 73.2
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 2.9e-38 162.5 83 95.2
Cre03.g146467 Chlamydomonas reinhardtii HOM05D004575 ORTHO05D005774 1.5e-37 160.2 188 45.7
MBI04_g06937_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 3.0e-35 152.5 75 98.7
MBI18_g29808_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 8.8e-35 151.0 75 97.3
MBI19_g16412_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.7e-33 146.7 79 93.7
Peaxi162Scf00827g00622 Petunia axillaris HOM05D004575 ORTHO05D005774 3.5e-23 112.5 58 93.1
A10p16140 Brassica napus HOM05D004575 ORTHO05D005774 9.8e-18 94.4 109 51.4
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 4.1e-16 89.0 70 67.1
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 9.2e-16 87.8 70 65.7
Lj7A455G28 Lonicera japonica HOM05D004575 ORTHO05D005774 1.0e-14 84.3 104 50.0
BolC3t13444H Brassica oleracea HOM05D004575 ORTHO05D010533 1.3e-14 84.0 42 95.2
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 3.9e-14 82.4 52 73.1
C09p49950 Brassica napus HOM05D004575 ORTHO05D033743 3.3e-13 79.3 99 50.5
Nitab4.5_0001296g0040 Nicotiana tabacum HOM05D001883 ORTHO05D002184 3.7e-09 65.9 109 45.0
Lj7A455T27 Lonicera japonica HOM05D004575 ORTHO05D005774 1.9e-08 63.5 54 63.0
A01p23900 Brassica napus HOM05D001825 ORTHO05D010533 7.8e-07 58.2 39 74.4


User provided reference genes

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