Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Peaxi162Scf00780g01013 Petunia axillaris HOM05D002585 ORTHO05D002917 4.5e-86 321.2 164 100.0
Peaxi162Scf00958g00520 Petunia axillaris HOM05D002585 ORTHO05D002917 5.3e-79 297.7 156 96.8
PGSC0003DMG400019014 Solanum tuberosum HOM05D002585 ORTHO05D002917 2.9e-61 238.8 165 73.3
Nitab4.5_0005208g0050 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.3e-58 229.2 165 70.9
Nitab4.5_0000132g0480 Nicotiana tabacum HOM05D002585 ORTHO05D002917 6.8e-58 227.6 165 69.7
PGSC0003DMG400028277 Solanum tuberosum HOM05D002585 ORTHO05D002917 1.8e-55 219.5 161 69.6
Solyc10g083840.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 7.7e-54 214.2 162 69.1
Sopen10g033280 Solanum pennellii HOM05D002585 ORTHO05D002917 2.8e-51 205.7 160 67.5
Peaxi162Scf00529g00035 Petunia axillaris HOM05D002585 ORTHO05D002917 5.2e-50 201.4 166 63.9
Nitab4.5_0008230g0010 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.4e-49 198.7 139 76.3
Solyc01g056430.2 Solanum lycopersicum HOM05D002585 ORTHO05D002917 3.5e-46 188.7 140 68.6
Nitab4.5_0008265g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.3e-45 186.8 167 63.5
Oeu041475.1 Olea europaea HOM05D002585 ORTHO05D002917 1.7e-45 186.4 192 53.6
Peaxi162Scf00247g00111 Petunia axillaris HOM05D002585 ORTHO05D002917 5.0e-45 184.9 141 67.4
vmacro07324 Vaccinium macrocarpon HOM05D002585 ORTHO05D002917 4.3e-44 181.8 168 54.2
CSS0049154 Camellia sinensis var. sinensis HOM05D002585 ORTHO05D002917 1.6e-43 179.9 163 57.7
Cc06_g04600 Coffea canephora HOM05D002585 ORTHO05D002917 1.6e-43 179.9 167 56.3
MSTRG.26675 Avicennia marina HOM05D002585 ORTHO05D002917 3.0e-42 175.6 164 57.3
A07p21410 Brassica napus HOM05D002585 ORTHO05D002917 3.0e-42 175.6 162 55.6
GSVIVG01033692001 Vitis vinifera HOM05D002585 ORTHO05D002917 3.0e-42 175.6 165 56.4
Migut.L01723 Erythranthe guttata HOM05D002585 ORTHO05D002917 5.2e-42 174.9 164 57.3
Nitab4.5_0003945g0140 Nicotiana tabacum HOM05D002585 ORTHO05D002917 5.2e-42 174.9 137 71.5
Sopen01g025510 Solanum pennellii HOM05D002585 ORTHO05D002917 5.2e-42 174.9 149 59.7
Peaxi162Scf00110g00619 Petunia axillaris HOM05D002585 ORTHO05D002917 1.5e-41 173.3 140 62.1
PGSC0003DMG401009595 Solanum tuberosum HOM05D002585 ORTHO05D002917 2.0e-41 172.9 124 71.8
Aa31LG10G8350 Aethionema arabicum HOM05D002585 ORTHO05D002917 4.4e-41 171.8 173 52.0
Nitab4.5_0000181g0090 Nicotiana tabacum HOM05D002585 ORTHO05D002917 7.5e-41 171.0 147 59.2
QL07p042117 Quercus lobata HOM05D002585 ORTHO05D002917 7.5e-41 171.0 162 54.3
Lalb_Chr21g0315151 Lupinus albus HOM05D002585 ORTHO05D002917 8.3e-40 167.5 162 54.3
THA.LOC104825825 Tarenaya hassleriana HOM05D002585 ORTHO05D002917 1.8e-39 166.4 161 53.4
Hma1.2p1_0547F.1_g176480 Hydrangea macrophylla HOM05D002585 ORTHO05D002917 2.4e-39 166.0 164 54.3
A09p46170 Brassica napus HOM05D002585 ORTHO05D002917 3.2e-39 165.6 164 51.8
C06p21020 Brassica napus HOM05D002585 ORTHO05D002917 4.1e-39 165.2 160 53.1
Lj5g0002795 Lotus japonicus HOM05D002585 ORTHO05D002917 4.1e-39 165.2 158 53.8
SalBow5G3646 Salvia bowleyana HOM05D002585 ORTHO05D002917 5.4e-39 164.9 161 55.3
Sc20g0005720 Simmondsia chinensis HOM05D002585 ORTHO05D002917 5.4e-39 164.9 165 51.5
BolC6t37286H Brassica oleracea HOM05D002585 ORTHO05D002917 9.2e-39 164.1 154 54.5
Glyma.10G060200 Glycine max HOM05D002585 ORTHO05D002917 2.0e-38 162.9 158 54.4
MD13G1277900 Malus domestica HOM05D002585 ORTHO05D002917 2.0e-38 162.9 158 54.4
Ciclev10011061m.g Citrus clementina HOM05D002585 ORTHO05D002917 2.7e-38 162.5 160 53.1
Phvul.007G152500 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 2.7e-38 162.5 163 53.4
Eucgr.A01617 Eucalyptus grandis HOM05D002585 ORTHO05D002917 3.5e-38 162.2 159 52.8
FAN14G4746 Fragaria x ananassa HOM05D002585 ORTHO05D002917 3.5e-38 162.2 165 51.5
PGR004G2132 Punica granatum HOM05D002585 ORTHO05D002917 4.6e-38 161.8 160 53.1
BraA07t29828Z Brassica rapa HOM05D002585 ORTHO05D002917 6.0e-38 161.4 160 52.5
FAN05G4263 Fragaria x ananassa HOM05D002585 ORTHO05D002917 6.0e-38 161.4 162 52.5
Sp5g09150 Schrenkiella parvula HOM05D002585 ORTHO05D002917 6.0e-38 161.4 161 52.2
Gorai.009G412500 Gossypium raimondii HOM05D002585 ORTHO05D002917 7.8e-38 161.0 161 52.8
BraA09t40081Z Brassica rapa HOM05D002585 ORTHO05D002917 1.0e-37 160.6 163 50.9
Thhalv10010120m.g Eutrema salsugineum HOM05D002585 ORTHO05D002917 1.0e-37 160.6 161 52.8
Gohir.D04G108400 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.0e-37 160.6 161 52.8
CARHR163130 Cardamine hirsuta HOM05D002585 ORTHO05D002917 1.7e-37 159.8 159 52.2
Lalb_Chr21g0315161 Lupinus albus HOM05D002585 ORTHO05D002917 1.7e-37 159.8 158 53.8
TAR369G0251 Trochodendron aralioides HOM05D002585 ORTHO05D002917 3.0e-37 159.1 163 50.3
EL10Ac7g16696 Beta vulgaris HOM05D002585 ORTHO05D002917 3.9e-37 158.7 161 50.9
AL5G34060 Arabidopsis lyrata HOM05D002585 ORTHO05D002917 5.0e-37 158.3 171 49.7
FAN05G4117 Fragaria x ananassa HOM05D002585 ORTHO05D002917 5.0e-37 158.3 162 51.9
Sed0020289 Sechium edule HOM05D002585 ORTHO05D002917 6.6e-37 157.9 158 48.7
Duzib093G2252 Durio zibethinus HOM05D002585 ORTHO05D002917 8.6e-37 157.5 160 51.9
AT3G53180 Arabidopsis thaliana HOM05D002585 ORTHO05D002917 1.1e-36 157.1 170 50.0
TWI53G0795 Tripterygium wilfordii HOM05D002585 ORTHO05D002917 1.9e-36 156.4 160 49.4
Solyc10g083850.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 2.5e-36 156.0 168 53.0
Actinidia28922 Actinidia chinensis HOM05D002585 ORTHO05D002917 3.3e-36 155.6 154 52.6
Potri.006G121000 Populus trichocarpa HOM05D002585 ORTHO05D002917 3.3e-36 155.6 159 52.2
Sabra06G0095200 Salix brachista HOM05D002585 ORTHO05D002917 3.3e-36 155.6 161 51.6
SGA_v2.0_scaffold224G42925 Striga asiatica HOM05D002585 ORTHO05D002917 3.3e-36 155.6 140 58.6
Thecc.05G072300 Theobroma cacao HOM05D002585 ORTHO05D002917 3.3e-36 155.6 160 50.6
FvH4_6g16930 Fragaria vesca HOM05D002585 ORTHO05D002917 5.6e-36 154.8 160 51.9
Sopen10g033290 Solanum pennellii HOM05D002585 ORTHO05D002917 5.6e-36 154.8 104 72.1
CAN.G541.44 Capsicum annuum HOM05D002585 ORTHO05D002917 9.5e-36 154.1 106 70.8
CANSAT80G1527 Cannabis sativa HOM05D002585 ORTHO05D002917 1.2e-35 153.7 162 52.5
Psat0s3029g0040 Pisum sativum HOM05D002585 ORTHO05D002917 1.2e-35 153.7 163 50.3
Medtr1g062620 Medicago truncatula HOM05D002585 ORTHO05D002917 2.8e-35 152.5 161 50.9
Prupe.7G124800 Prunus persica HOM05D002585 ORTHO05D002917 2.8e-35 152.5 158 50.6
CANSAT80G2890 Cannabis sativa HOM05D002585 ORTHO05D002917 3.6e-35 152.1 162 52.5
Medtr1g062650 Medicago truncatula HOM05D002585 ORTHO05D002917 6.2e-35 151.4 157 51.6
Rhsim03G0088700 Rhododendron simsii HOM05D002585 ORTHO05D002917 6.2e-35 151.4 142 54.9
RcHm_v2.0_Chr3g0470971 Rosa chinensis HOM05D002585 ORTHO05D002917 6.2e-35 151.4 158 51.3
Sed0005893 Sechium edule HOM05D002585 ORTHO05D002917 6.2e-35 151.4 159 48.4
Lj5g0007956 Lotus japonicus HOM05D002585 ORTHO05D002917 8.0e-35 151.0 159 47.2
Aqoxy1G01087 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 1.1e-34 150.6 165 47.9
Nn6g35210 Nelumbo nucifera HOM05D002585 ORTHO05D002917 1.8e-34 149.8 163 49.1
RcHm_v2.0_Chr5g0018301 Rosa chinensis HOM05D002585 ORTHO05D002917 1.8e-34 149.8 158 51.9
Sed0022969 Sechium edule HOM05D002585 ORTHO05D002917 1.8e-34 149.8 157 49.7
CsaV3_6G040120 Cucumis sativus L. HOM05D002585 ORTHO05D002917 3.1e-34 149.1 160 50.0
ECA233G1422 Erigeron canadensis HOM05D002585 ORTHO05D002917 4.0e-34 148.7 164 50.0
PSO063G7003 Papaver somniferum HOM05D002585 ORTHO05D002917 4.0e-34 148.7 162 45.7
BcaB01g00304 Brassica carinata HOM05D002585 ORTHO05D002917 5.2e-34 148.3 137 55.5
BcaC08g44624 Brassica carinata HOM05D002585 ORTHO05D002917 5.2e-34 148.3 137 54.0
FAN02G4184 Fragaria x ananassa HOM05D002585 ORTHO05D002917 5.2e-34 148.3 158 50.0
Sopen06g005510 Solanum pennellii HOM05D002585 ORTHO05D002917 5.2e-34 148.3 117 61.5
unitig_8.g4719 Utricularia gibba HOM05D002585 ORTHO05D002917 5.2e-34 148.3 162 50.0
Ca_11569_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 6.8e-34 147.9 163 48.5
Manes.08G013600 Manihot esculenta HOM05D002585 ORTHO05D002917 6.8e-34 147.9 160 51.9
Cfa021472 Carpinus fangiana HOM05D002585 ORTHO05D002917 8.9e-34 147.5 150 53.3
arahy.Tifrunner.gnm1.ann1.7710RN Arachis hypogaea HOM05D002585 ORTHO05D002917 1.2e-33 147.1 137 55.5
arahy.Tifrunner.gnm1.ann1.7YQ2TW Arachis hypogaea HOM05D002585 ORTHO05D002917 1.2e-33 147.1 137 55.5
arahy.Tifrunner.gnm1.ann1.SIB7C5 Arachis hypogaea HOM05D002585 ORTHO05D002917 1.2e-33 147.1 137 55.5
arahy.Tifrunner.gnm1.ann1.YR6AFM Arachis hypogaea HOM05D002585 ORTHO05D002917 1.2e-33 147.1 137 55.5
Ca_05180_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 1.5e-33 146.7 163 46.0
Nitab4.5_0000217g0060 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.0e-33 146.4 159 52.8
SalBow5G4367 Salvia bowleyana HOM05D002585 ORTHO05D002917 2.0e-33 146.4 143 54.5
PSO339G5475 Papaver somniferum HOM05D002585 ORTHO05D002917 2.6e-33 146.0 162 44.4
HanXRQChr05g0144531 Helianthus annuus HOM05D002585 ORTHO05D002917 3.4e-33 145.6 163 49.1
Medtr1g062710 Medicago truncatula HOM05D002585 ORTHO05D002917 3.4e-33 145.6 160 46.2
BcaC07g39674 Brassica carinata HOM05D002585 ORTHO05D002917 4.4e-33 145.2 140 53.6
C08p28400 Brassica napus HOM05D002585 ORTHO05D002917 4.4e-33 145.2 140 53.6
BolC8t50450H Brassica oleracea HOM05D002585 ORTHO05D002917 4.4e-33 145.2 140 53.6
ATR0043G008 Amborella trichopoda HOM05D002585 ORTHO05D002917 7.5e-33 144.4 156 46.2
ClCG04G009500 Citrullus lanatus HOM05D002585 ORTHO05D002917 7.5e-33 144.4 156 50.0
Sed0002653 Sechium edule HOM05D002585 ORTHO05D002917 7.5e-33 144.4 162 48.8
Sed0005462 Sechium edule HOM05D002585 ORTHO05D002917 1.3e-32 143.7 157 47.1
Sed0026659 Sechium edule HOM05D002585 ORTHO05D002917 1.3e-32 143.7 160 51.9
Psat6g074480 Pisum sativum HOM05D002585 ORTHO05D002917 3.7e-32 142.1 159 45.9
Hund20555 Selenicereus undatus HOM05D002585 ORTHO05D002917 6.4e-32 141.4 152 48.0
Cpa.g.sc5.155 Carica papaya HOM05D002585 ORTHO05D002917 1.9e-31 139.8 138 50.7
Lsat_1_v5_gn_8_145640 Lactuca sativa HOM05D002585 ORTHO05D002917 1.9e-31 139.8 138 52.9
CANSAT35G1791 Cannabis sativa HOM05D002585 ORTHO05D002917 2.4e-31 139.4 166 47.0
Lj3C991T4 Lonicera japonica HOM05D002585 ORTHO05D002917 7.0e-31 137.9 106 66.0
MBI17_g25733_MAGBIO Magnolia biondii HOM05D002585 ORTHO05D002917 9.2e-31 137.5 140 52.1
Os10g0456500 Oryza sativa ssp. japonica HOM05D002585 ORTHO05D002917 1.6e-30 136.7 160 46.9
Glyma.10G060100 Glycine max HOM05D002585 ORTHO05D002917 6.0e-30 134.8 165 44.2
Lalb_Chr02g0155491 Lupinus albus HOM05D002585 ORTHO05D002917 6.0e-30 134.8 137 51.8
SMO367G0811 Selaginella moellendorffii HOM05D002585 ORTHO05D002917 3.0e-29 132.5 161 42.9
VMungo0720G0437 Vigna mungo HOM05D002585 ORTHO05D002917 5.0e-29 131.7 150 48.0
Atru.chr8.1743 Acer truncatum HOM05D002585 ORTHO05D002917 1.9e-28 129.8 142 48.6
Phvul.007G152300 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 5.6e-28 128.3 164 42.7
Gorai.002G160800 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.1e-26 124.0 152 44.7
Pp3c1_32960 Physcomitrium patens HOM05D002585 ORTHO05D002917 1.4e-26 123.6 159 39.0
DCAR_015012 Daucus carota HOM05D002585 ORTHO05D002917 2.3e-26 122.9 109 56.0
Pp3c14_19260 Physcomitrium patens HOM05D002585 ORTHO05D002917 3.1e-26 122.5 159 39.0
SHI27836 Sapria himalayana HOM05D002585 ORTHO05D002917 5.2e-26 121.7 136 47.8
Gohir.D01G129800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 6.8e-26 121.3 158 44.3
unitig_0.g678 Utricularia gibba HOM05D002585 ORTHO05D002917 1.5e-25 120.2 144 46.5
Dinv37345 Davidia involucrata HOM05D002585 ORTHO05D002917 9.9e-25 117.5 109 53.2
Pp3c21_9940 Physcomitrium patens HOM05D002585 ORTHO05D002917 1.7e-24 116.7 161 39.8
Ah.15g091400 Amaranthus hybridus HOM05D002585 ORTHO05D002917 3.7e-24 115.5 118 49.2
Solyc01g056390.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.4e-23 113.6 75 76.0
HPP92_008392 Vanilla planifolia HOM05D002585 ORTHO05D002917 7.1e-23 111.3 139 43.2
Pp3c22_1270 Physcomitrium patens HOM05D002585 ORTHO05D002917 2.7e-22 109.4 161 37.9
VMungo0720G1363 Vigna mungo HOM05D002585 ORTHO05D002917 4.6e-22 108.6 160 39.4
TPR.G21013 Trifolium pratense HOM05D002585 ORTHO05D002917 6.0e-22 108.2 133 42.1
QL07p042139 Quercus lobata HOM05D002585 ORTHO05D002917 3.9e-21 105.5 104 51.0
Sopen01g019530 Solanum pennellii HOM05D002585 ORTHO05D002917 1.1e-20 104.0 77 67.5
Solyc06g011290.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.5e-20 103.6 92 54.3
TPR.G21005 Trifolium pratense HOM05D002585 ORTHO05D002917 1.5e-20 103.6 98 55.1
CBR_g37575 Chara braunii HOM05D002585 ORTHO05D002917 2.1e-19 99.8 145 38.6
COL.COLO4_26904 Corchorus olitorius HOM05D002585 ORTHO05D002917 5.2e-18 95.1 82 54.9
AUR62041382 Chenopodium quinoa HOM05D002585 ORTHO05D002917 1.0e-13 80.9 81 49.4
Sopen01g019520 Solanum pennellii HOM05D002585 ORTHO05D051164 3.9e-13 79.0 56 67.9
CBR_g51531 Chara braunii HOM05D002585 ORTHO05D002917 4.3e-12 75.5 95 44.2
Solyc01g056380.1 Solanum lycopersicum HOM05D002585 ORTHO05D051164 2.8e-11 72.8 59 59.3
Aqoxy195s007 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 2.6e-09 66.2 56 53.6
Manes.08G013700 Manihot esculenta HOM05D002585 ORTHO05D002917 7.1e-07 58.2 51 52.9


User provided reference genes

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