Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Peaxi162Scf00711g00017 Petunia axillaris HOM05D004459 ORTHO05D005178 8.0e-42 173.3 87 100.0
Peaxi162Scf00487g00620 Petunia axillaris HOM05D004459 ORTHO05D005178 4.6e-21 104.4 65 81.5
Nitab4.5_0003020g0110 Nicotiana tabacum HOM05D004459 ORTHO05D005178 2.3e-20 102.1 65 76.9
Sopen06g034640 Solanum pennellii HOM05D004459 ORTHO05D005178 3.9e-20 101.3 65 76.9
Nitab4.5_0005866g0010 Nicotiana tabacum HOM05D004459 ORTHO05D005178 5.1e-20 100.9 65 76.9
Solyc06g083260.3 Solanum lycopersicum HOM05D004459 ORTHO05D005178 5.1e-20 100.9 65 75.4
PGSC0003DMG401020104 Solanum tuberosum HOM05D004459 ORTHO05D005178 5.1e-20 100.9 65 75.4
Nitab4.5_0002671g0020 Nicotiana tabacum HOM05D004459 ORTHO05D005178 6.6e-20 100.5 65 73.8
DCAR_000515 Daucus carota HOM05D004459 ORTHO05D005178 1.5e-19 99.4 65 75.4
Dinv14524 Davidia involucrata HOM05D004459 ORTHO05D005178 3.3e-19 98.2 65 75.4
Nitab4.5_0000403g0040 Nicotiana tabacum HOM05D004459 ORTHO05D005178 5.6e-19 97.4 65 75.4
Migut.D02511 Erythranthe guttata HOM05D004459 ORTHO05D005178 7.3e-19 97.1 65 73.8
Cc01_g16560 Coffea canephora HOM05D004459 ORTHO05D005178 9.5e-19 96.7 65 70.8
ECA236G4121 Erigeron canadensis HOM05D004459 ORTHO05D005178 9.5e-19 96.7 65 72.3
HanXRQChr04g0108291 Helianthus annuus HOM05D004459 ORTHO05D005178 9.5e-19 96.7 65 72.3
Lsat_1_v5_gn_5_177641 Lactuca sativa HOM05D004459 ORTHO05D005178 1.2e-18 96.3 65 70.8
Actinidia09461 Actinidia chinensis HOM05D004459 ORTHO05D005178 1.6e-18 95.9 65 70.8
Actinidia23765 Actinidia chinensis HOM05D004459 ORTHO05D005178 2.1e-18 95.5 65 70.8
QL02p059745 Quercus lobata HOM05D004459 ORTHO05D005178 2.1e-18 95.5 65 72.3
QL02p059784 Quercus lobata HOM05D004459 ORTHO05D005178 2.1e-18 95.5 65 72.3
CAN.G874.13 Capsicum annuum HOM05D004459 ORTHO05D005178 2.8e-18 95.1 69 68.1
ClCG02G000030 Citrullus lanatus HOM05D004459 ORTHO05D005178 2.8e-18 95.1 65 72.3
CsaV3_2G019680 Cucumis sativus L. HOM05D004459 ORTHO05D005178 2.8e-18 95.1 65 72.3
Psat3g149520 Pisum sativum HOM05D004459 ORTHO05D005178 2.8e-18 95.1 65 72.3
ECA248G3763 Erigeron canadensis HOM05D004459 ORTHO05D005178 3.6e-18 94.7 65 69.2
SGA_v2.0_scaffold104G30089 Striga asiatica HOM05D004459 ORTHO05D005178 3.6e-18 94.7 63 73.0
CARHR183330 Cardamine hirsuta HOM05D004459 ORTHO05D005178 4.7e-18 94.4 65 67.7
Glyma.18G159000 Glycine max HOM05D004459 ORTHO05D005178 4.7e-18 94.4 65 72.3
Medtr7g055650 Medicago truncatula HOM05D004459 ORTHO05D005178 4.7e-18 94.4 65 72.3
Thecc.01G217400 Theobroma cacao HOM05D004459 ORTHO05D005178 4.7e-18 94.4 65 70.8
CSS0012359 Camellia sinensis var. sinensis HOM05D004459 ORTHO05D005178 6.2e-18 94.0 65 70.8
THA.LOC104822487 Tarenaya hassleriana HOM05D004459 ORTHO05D005178 6.2e-18 94.0 65 69.2
MSTRG.20974 Avicennia marina HOM05D004459 ORTHO05D005178 8.1e-18 93.6 65 70.8
Duzib138G0860 Durio zibethinus HOM05D004459 ORTHO05D005178 8.1e-18 93.6 65 69.2
Gohir.A11G140100 Gossypium hirsutum HOM05D004459 ORTHO05D005178 8.1e-18 93.6 65 69.2
Gohir.D11G146500 Gossypium hirsutum HOM05D004459 ORTHO05D005178 8.1e-18 93.6 65 69.2
Gorai.007G156900 Gossypium raimondii HOM05D004459 ORTHO05D005178 8.1e-18 93.6 65 69.2
Aqoxy2G03940 Aquilegia oxysepala HOM05D004459 ORTHO05D005178 1.1e-17 93.2 65 72.3
arahy.Tifrunner.gnm1.ann1.J5WB5S Arachis hypogaea HOM05D004459 ORTHO05D005178 1.1e-17 93.2 65 70.8
HanXRQChr01g0015361 Helianthus annuus HOM05D004459 ORTHO05D005178 1.1e-17 93.2 65 67.7
Nn3g20066 Nelumbo nucifera HOM05D004459 ORTHO05D005178 1.1e-17 93.2 65 70.8
TWI36G0336 Tripterygium wilfordii HOM05D004459 ORTHO05D005178 1.1e-17 93.2 65 69.2
COL.COLO4_16102 Corchorus olitorius HOM05D004459 ORTHO05D005178 1.4e-17 92.8 65 69.2
Lalb_Chr01g0022191 Lupinus albus HOM05D004459 ORTHO05D005178 1.4e-17 92.8 65 69.2
Manes.13G050900 Manihot esculenta HOM05D004459 ORTHO05D005178 1.4e-17 92.8 65 69.2
BcaB07g30037 Brassica carinata HOM05D004459 ORTHO05D005178 1.8e-17 92.4 65 66.2
BcaC03g17667 Brassica carinata HOM05D004459 ORTHO05D005178 1.8e-17 92.4 65 66.2
A02p37650 Brassica napus HOM05D004459 ORTHO05D005178 1.8e-17 92.4 65 66.2
C02p56740 Brassica napus HOM05D004459 ORTHO05D005178 1.8e-17 92.4 65 66.2
BolC2t11742H Brassica oleracea HOM05D004459 ORTHO05D005178 1.8e-17 92.4 65 66.2
BraA02t08747Z Brassica rapa HOM05D004459 ORTHO05D005178 1.8e-17 92.4 65 66.2
Ciclev10021820m.g Citrus clementina HOM05D004459 ORTHO05D005178 1.8e-17 92.4 65 69.2
Thhalv10004803m.g Eutrema salsugineum HOM05D004459 ORTHO05D005178 1.8e-17 92.4 65 66.2
Sp2g19010 Schrenkiella parvula HOM05D004459 ORTHO05D005178 1.8e-17 92.4 65 66.2
THA.LOC104818977 Tarenaya hassleriana HOM05D004459 ORTHO05D005178 1.8e-17 92.4 64 68.8
Glyma.08G347600 Glycine max HOM05D004459 ORTHO05D005178 2.4e-17 92.0 65 69.2
Gohir.D07G096900 Gossypium hirsutum HOM05D004459 ORTHO05D005178 2.4e-17 92.0 65 67.7
Gorai.001G104300 Gossypium raimondii HOM05D004459 ORTHO05D005178 2.4e-17 92.0 65 67.7
Lj1g0001756 Lotus japonicus HOM05D004459 ORTHO05D005178 2.4e-17 92.0 65 69.2
AL8G21650 Arabidopsis lyrata HOM05D004459 ORTHO05D005178 3.1e-17 91.7 65 66.2
AT5G48630 Arabidopsis thaliana HOM05D004459 ORTHO05D005178 3.1e-17 91.7 65 66.2
CiPaw.13G050600 Carya illinoinensis HOM05D004459 ORTHO05D005178 3.1e-17 91.7 65 70.8
Duzib133G1079 Durio zibethinus HOM05D004459 ORTHO05D005178 3.1e-17 91.7 65 70.8
Hund05584 Selenicereus undatus HOM05D004459 ORTHO05D005178 3.1e-17 91.7 65 67.7
unitig_0.g407 Utricularia gibba HOM05D004459 ORTHO05D005178 3.1e-17 91.7 65 70.8
Carub.0008s0830 Capsella rubella HOM05D004459 ORTHO05D005178 4.0e-17 91.3 65 64.6
AL293U10030 Arabidopsis lyrata HOM05D004459 ORTHO05D005178 5.2e-17 90.9 65 64.6
Phvul.008G132450 Phaseolus vulgaris HOM05D004459 ORTHO05D005178 5.2e-17 90.9 65 67.7
Sed0021622 Sechium edule HOM05D004459 ORTHO05D005178 5.2e-17 90.9 65 69.2
THA.LOC104822488 Tarenaya hassleriana HOM05D004459 ORTHO05D005178 5.2e-17 90.9 65 70.8
VMungo1383G0758 Vigna mungo HOM05D004459 ORTHO05D005178 5.2e-17 90.9 65 67.7
Gohir.A07G092400 Gossypium hirsutum HOM05D004459 ORTHO05D005178 6.8e-17 90.5 65 66.2
Lsat_1_v5_gn_3_115720 Lactuca sativa HOM05D004459 ORTHO05D005178 6.8e-17 90.5 63 69.8
Lalb_Chr19g0125891 Lupinus albus HOM05D004459 ORTHO05D005178 6.8e-17 90.5 65 67.7
PSO017G6853 Papaver somniferum HOM05D004459 ORTHO05D005178 6.8e-17 90.5 65 69.2
Prupe.8G196700 Prunus persica HOM05D004459 ORTHO05D005178 6.8e-17 90.5 65 66.2
GSVIVG01006388001 Vitis vinifera HOM05D004459 ORTHO05D005178 6.8e-17 90.5 65 69.2
Cfa021481 Carpinus fangiana HOM05D004459 ORTHO05D005178 8.9e-17 90.1 65 69.2
MSTRG.17987 Avicennia marina HOM05D004459 ORTHO05D005178 1.2e-16 89.7 65 66.2
MD10G1158300 Malus domestica HOM05D004459 ORTHO05D005178 1.2e-16 89.7 65 66.2
Phvul.007G143100 Phaseolus vulgaris HOM05D004459 ORTHO05D005178 1.2e-16 89.7 65 66.2
CiPaw.14G040200 Carya illinoinensis HOM05D004459 ORTHO05D005178 1.5e-16 89.4 65 66.2
Eucgr.H00759 Eucalyptus grandis HOM05D004459 ORTHO05D005178 1.5e-16 89.4 64 68.8
MD10G1157700 Malus domestica HOM05D004459 ORTHO05D005178 1.5e-16 89.4 65 64.6
Os09g0504400 Oryza sativa ssp. japonica HOM05D004459 ORTHO05D005178 1.5e-16 89.4 65 69.2
PSO063G5689 Papaver somniferum HOM05D004459 ORTHO05D005178 1.5e-16 89.4 65 67.7
Atru.chr6.1442 Acer truncatum HOM05D004459 ORTHO05D005178 2.0e-16 89.0 65 67.7
Carub.0005s0820 Capsella rubella HOM05D004459 ORTHO05D005178 2.0e-16 89.0 65 63.1
Haze_03347 Corylus avellana HOM05D004459 ORTHO05D005178 2.0e-16 89.0 65 69.2
CANSAT01G2987 Cannabis sativa HOM05D004459 ORTHO05D005178 2.6e-16 88.6 65 67.7
RcHm_v2.0_Chr6g0283781 Rosa chinensis HOM05D004459 ORTHO05D005178 2.6e-16 88.6 65 64.6
Carub.0008s0831 Capsella rubella HOM05D004459 ORTHO05D005178 3.4e-16 88.2 65 70.8
Hma1.2p1_0149F.1_g066510 Hydrangea macrophylla HOM05D004459 ORTHO05D005178 3.4e-16 88.2 65 69.2
ATR0561G002 Amborella trichopoda HOM05D004459 ORTHO05D005178 4.4e-16 87.8 65 66.2
FvH4_2g18390 Fragaria vesca HOM05D004459 ORTHO05D005178 4.4e-16 87.8 65 63.1
FAN15G2342 Fragaria x ananassa HOM05D004459 ORTHO05D005178 4.4e-16 87.8 65 63.1
FAN27G2700 Fragaria x ananassa HOM05D004459 ORTHO05D005178 4.4e-16 87.8 65 63.1
PGR083G1823 Punica granatum HOM05D004459 ORTHO05D005178 5.8e-16 87.4 65 67.7
Sabra02G0187900 Salix brachista HOM05D004459 ORTHO05D005178 5.8e-16 87.4 65 64.6
Potri.002G246800 Populus trichocarpa HOM05D004459 ORTHO05D005178 7.6e-16 87.0 61 67.2
AL8G21660 Arabidopsis lyrata HOM05D004459 ORTHO05D005178 9.9e-16 86.7 65 69.2
AT5G48640 Arabidopsis thaliana HOM05D004459 ORTHO05D005178 9.9e-16 86.7 65 69.2
Carub.0005s0821 Capsella rubella HOM05D004459 ORTHO05D005178 9.9e-16 86.7 65 69.2
SalBow6G5468 Salvia bowleyana HOM05D004459 ORTHO05D005178 9.9e-16 86.7 64 68.8
A06p39040 Brassica napus HOM05D004459 ORTHO05D005178 1.3e-15 86.3 65 69.2
BraA06t26817Z Brassica rapa HOM05D004459 ORTHO05D005178 1.3e-15 86.3 65 69.2
HPP92_001407 Vanilla planifolia HOM05D004459 ORTHO05D005178 1.7e-15 85.9 61 68.9
Zm00001eb317580 Zea mays HOM05D004459 ORTHO05D005178 2.2e-15 85.5 65 66.2
EL10Ac5g11649 Beta vulgaris HOM05D004459 ORTHO05D005178 2.9e-15 85.1 61 67.2
EL10Ac7g17932 Beta vulgaris HOM05D004459 ORTHO05D005178 2.9e-15 85.1 61 67.2
BcaC06g30774 Brassica carinata HOM05D004459 ORTHO05D005178 2.9e-15 85.1 65 67.7
C07p39300 Brassica napus HOM05D004459 ORTHO05D005178 2.9e-15 85.1 65 67.7
BolC7t44450H Brassica oleracea HOM05D004459 ORTHO05D005178 2.9e-15 85.1 65 67.7
TAR365G0904 Trochodendron aralioides HOM05D004459 ORTHO05D005178 3.8e-15 84.7 69 66.7
Thhalv10004814m.g Eutrema salsugineum HOM05D004459 ORTHO05D005178 4.9e-15 84.3 65 67.7
vmacro14724 Vaccinium macrocarpon HOM05D004459 ORTHO05D005178 6.4e-15 84.0 77 57.1
BcaC03g17668 Brassica carinata HOM05D004459 ORTHO05D005178 8.4e-15 83.6 65 64.6
A02p37660 Brassica napus HOM05D004459 ORTHO05D005178 8.4e-15 83.6 65 64.6
C02p56750 Brassica napus HOM05D004459 ORTHO05D005178 8.4e-15 83.6 65 64.6
BolC2t11743H Brassica oleracea HOM05D004459 ORTHO05D005178 8.4e-15 83.6 65 64.6
Potri.014G194900 Populus trichocarpa HOM05D004459 ORTHO05D005178 8.4e-15 83.6 64 67.2
Sp2g19020 Schrenkiella parvula HOM05D004459 ORTHO05D005178 1.9e-14 82.4 62 69.4
SMO147G0024 Selaginella moellendorffii HOM05D004459 ORTHO05D005178 2.4e-14 82.0 64 65.6
BcaB07g30038 Brassica carinata HOM05D004459 ORTHO05D005178 3.2e-14 81.6 65 64.6
Aa31LG6G9700 Aethionema arabicum HOM05D004459 ORTHO05D005178 5.4e-14 80.9 65 64.6
Mapoly0005s0080 Marchantia polymorpha HOM05D004459 ORTHO05D005178 1.6e-13 79.3 65 60.0
FAN24G3552 Fragaria x ananassa HOM05D004459 ORTHO05D005178 7.8e-13 77.0 69 56.5
MBI07_g27657_MAGBIO Magnolia biondii HOM05D004459 ORTHO05D005178 7.8e-13 77.0 78 55.1
TPR.G6416 Trifolium pratense HOM05D004459 ORTHO05D005178 1.0e-12 76.6 46 78.3
CDE11G0402 Ceratophyllum demersum HOM05D004459 ORTHO05D005178 3.9e-12 74.7 57 63.2
Pp3c24_1910 Physcomitrium patens HOM05D004459 ORTHO05D005178 3.9e-12 74.7 64 56.2
Pp3c23_12870 Physcomitrium patens HOM05D004459 ORTHO05D005178 6.6e-12 73.9 61 59.0
AagrBONN_evm.TU.Sc2ySwM_344.4413 Anthoceros agrestis HOM05D004459 ORTHO05D005178 8.7e-12 73.6 65 56.9
AUR62001146 Chenopodium quinoa HOM05D004459 ORTHO05D005178 1.1e-11 73.2 62 61.3
AUR62016530 Chenopodium quinoa HOM05D004459 ORTHO05D005178 3.3e-11 71.6 62 59.7
Ah.08g214750 Amaranthus hybridus HOM05D004459 ORTHO05D005178 4.3e-11 71.2 46 71.7
Sc05g0001910 Simmondsia chinensis HOM05D004459 ORTHO05D005178 4.3e-11 71.2 49 71.4
QL03p030217 Quercus lobata HOM05D000176 ORTHO05D000106 1.7e-07 59.3 33 84.8
QL02p043717 Quercus lobata HOM05D002263 ORTHO05D012916 2.9e-07 58.5 33 81.8
QL08p003462 Quercus lobata HOM05D002263 ORTHO05D012916 2.9e-07 58.5 33 81.8
SHI14518 Sapria himalayana HOM05D004459 ORTHO05D005178 3.8e-07 58.2 65 47.7
Cre03.g174476 Chlamydomonas reinhardtii HOM05D004459 ORTHO05D005178 3.2e-06 55.1 62 46.8


User provided reference genes

Program Settings