Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 3.3e-60 235.0 126 100.0
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 8.9e-42 173.7 178 60.1
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 1.4e-39 166.4 170 58.8
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 2.7e-38 162.2 170 57.6
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 2.1e-35 152.5 127 66.1
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 6.2e-35 151.0 176 51.7
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 5.2e-34 147.9 176 51.1
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 8.9e-34 147.1 176 52.8
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 8.9e-34 147.1 183 53.0
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 4.4e-33 144.8 178 52.2
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 6.6e-29 131.0 176 48.3
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 6.6e-29 131.0 131 60.3
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 8.6e-29 130.6 178 47.8
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 8.6e-29 130.6 177 46.3
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.1e-28 130.2 178 48.3
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.1e-28 130.2 178 47.8
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 3.3e-28 128.6 178 46.1
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 4.3e-28 128.3 175 46.9
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 3.1e-26 122.1 165 49.1
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 5.2e-26 121.3 178 48.3
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 6.8e-26 120.9 166 46.4
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 1.5e-25 119.8 176 44.9
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 1.5e-25 119.8 166 45.2
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 2.0e-25 119.4 177 46.3
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 2.0e-25 119.4 176 44.3
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 2.6e-25 119.0 168 44.6
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 3.4e-25 118.6 176 43.8
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 4.4e-25 118.2 166 47.6
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 9.9e-25 117.1 167 43.7
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 1.3e-24 116.7 176 44.3
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.7e-24 116.3 177 41.8
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 2.2e-24 115.9 159 43.4
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 2.2e-24 115.9 163 46.0
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.9e-24 115.5 177 41.8
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 6.4e-24 114.4 177 41.8
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 8.4e-24 114.0 168 44.6
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 8.4e-24 114.0 168 44.6
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 1.1e-23 113.6 159 44.0
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 1.4e-23 113.2 167 44.3
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 1.9e-23 112.8 165 42.4
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 3.2e-23 112.1 173 42.8
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 9.3e-23 110.5 155 45.8
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 1.2e-22 110.2 173 41.0
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 4.6e-22 108.2 167 43.7
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 6.0e-22 107.8 171 42.1
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 7.8e-22 107.5 171 40.9
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 1.0e-21 107.1 174 40.8
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 2.3e-21 105.9 174 41.4
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 3.0e-21 105.5 171 40.9
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 3.0e-21 105.5 161 44.1
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 3.0e-21 105.5 168 41.1
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 3.9e-21 105.1 171 40.9
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 6.6e-21 104.4 172 40.7
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 1.1e-20 103.6 175 40.6
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 1.1e-20 103.6 175 40.6
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.1e-20 103.6 172 41.3
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 2.5e-20 102.4 173 40.5
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 5.6e-20 101.3 171 40.9
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 7.3e-20 100.9 173 39.3
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 9.6e-20 100.5 170 38.8
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 1.3e-19 100.1 172 41.9
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 1.3e-19 100.1 173 39.3
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.3e-19 100.1 202 36.6
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.3e-19 100.1 162 42.0
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 2.1e-19 99.4 167 38.9
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 2.1e-19 99.4 177 40.7
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 3.6e-19 98.6 165 39.4
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 1.1e-18 97.1 174 39.7
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 1.1e-18 97.1 172 40.1
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 1.1e-18 97.1 167 38.3
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 1.8e-18 96.3 171 38.0
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 5.3e-18 94.7 172 37.8
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 5.3e-18 94.7 165 38.2
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 9.0e-18 94.0 196 36.7
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 9.0e-18 94.0 176 36.4
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 9.0e-18 94.0 176 35.8
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 9.0e-18 94.0 118 49.2
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 1.5e-17 93.2 174 39.7
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.5e-17 93.2 165 37.0
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 2.0e-17 92.8 172 38.4
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 5.8e-17 91.3 159 42.8
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 5.8e-17 91.3 78 67.9
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.2e-16 89.4 135 42.2
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 2.9e-16 89.0 88 56.8
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 3.8e-16 88.6 174 37.4
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 6.4e-16 87.8 164 35.4
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 1.1e-15 87.0 169 38.5
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.1e-15 87.0 175 38.3
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 1.1e-15 87.0 168 39.3
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 1.4e-15 86.7 153 39.9
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.4e-15 86.7 216 31.5
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 1.4e-15 86.7 89 58.4
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 1.9e-15 86.3 89 59.6
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 2.4e-15 85.9 80 61.2
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 2.4e-15 85.9 161 37.3
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 2.4e-15 85.9 131 43.5
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 3.2e-15 85.5 84 58.3
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 3.2e-15 85.5 89 56.2
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 4.2e-15 85.1 77 66.2
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 5.4e-15 84.7 84 59.5
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 5.4e-15 84.7 141 40.4
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 7.1e-15 84.3 211 30.3
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 1.2e-14 83.6 87 56.3
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 1.2e-14 83.6 87 56.3
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 2.1e-14 82.8 159 36.5
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 2.1e-14 82.8 81 59.3
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 2.1e-14 82.8 165 35.8
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 4.6e-14 81.6 77 63.6
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 4.6e-14 81.6 83 55.4
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 4.6e-14 81.6 83 55.4
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 4.6e-14 81.6 163 37.4
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 6.0e-14 81.3 77 63.6
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 6.0e-14 81.3 219 29.2
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 7.9e-14 80.9 171 35.1
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 7.9e-14 80.9 169 33.7
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 2.3e-13 79.3 166 34.3
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 2.3e-13 79.3 166 34.3
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.3e-13 79.3 159 36.5
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 2.3e-13 79.3 90 53.3
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 2.3e-13 79.3 85 52.9
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 3.0e-13 79.0 86 58.1
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 3.9e-13 78.6 136 38.2
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 3.9e-13 78.6 81 55.6
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 3.9e-13 78.6 85 54.1
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 8.7e-13 77.4 85 54.1
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 1.1e-12 77.0 77 57.1
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 1.5e-12 76.6 80 56.2
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 1.5e-12 76.6 40 85.0
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 1.9e-12 76.3 75 56.0
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 2.5e-12 75.9 82 57.3
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 3.3e-12 75.5 84 56.0
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 7.4e-12 74.3 84 56.0
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 9.6e-12 73.9 175 36.0
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 1.3e-11 73.6 80 53.8
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 2.1e-11 72.8 78 55.1
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 3.6e-11 72.0 84 54.8
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 4.8e-11 71.6 81 54.3
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.1e-10 70.5 109 46.8
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 9.0e-10 67.4 35 88.6
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 2.2e-08 62.8 82 48.8
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 3.8e-08 62.0 90 47.8
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 6.4e-08 61.2 45 75.6
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 6.4e-08 61.2 35 77.1
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 6.4e-08 61.2 81 49.4
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 5.5e-07 58.2 103 41.7


User provided reference genes

Program Settings