Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 3.2e-62 241.5 117 100.0
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.3e-42 176.4 124 72.6
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.4e-41 172.9 131 70.2
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 7.0e-41 170.6 127 70.9
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 7.7e-40 167.2 129 71.3
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 3.8e-39 164.9 122 68.9
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 6.6e-39 164.1 129 70.5
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 2.5e-38 162.2 122 68.0
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 4.2e-38 161.4 124 71.0
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 4.2e-38 161.4 122 68.9
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 7.2e-38 160.6 122 67.2
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 4.4e-35 151.4 122 63.1
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 9.8e-35 150.2 123 62.6
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 2.4e-33 145.6 123 57.7
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 5.4e-33 144.4 124 62.1
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 9.2e-33 143.7 118 63.6
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 1.2e-32 143.3 127 56.7
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 2.7e-32 142.1 116 62.1
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 2.7e-32 142.1 121 60.3
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 7.8e-32 140.6 120 59.2
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 1.3e-31 139.8 118 60.2
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 2.3e-31 139.0 123 56.1
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 2.9e-31 138.7 122 57.4
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 5.0e-31 137.9 116 58.6
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 5.0e-31 137.9 116 59.5
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 6.6e-31 137.5 122 57.4
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 6.6e-31 137.5 122 58.2
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 8.6e-31 137.1 119 58.0
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.5e-30 136.3 119 57.1
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 1.5e-30 136.3 120 59.2
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 1.5e-30 136.3 122 57.4
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.9e-30 136.0 117 58.1
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 1.9e-30 136.0 122 57.4
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 2.5e-30 135.6 122 55.7
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 2.5e-30 135.6 121 56.2
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 3.3e-30 135.2 123 56.9
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 4.3e-30 134.8 121 57.0
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 4.3e-30 134.8 119 57.1
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 5.6e-30 134.4 122 54.1
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 7.3e-30 134.0 122 59.0
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 9.5e-30 133.7 116 57.8
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 1.2e-29 133.3 118 55.9
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 1.6e-29 132.9 121 54.5
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 2.1e-29 132.5 121 54.5
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 2.1e-29 132.5 126 54.0
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 2.8e-29 132.1 120 55.8
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 4.7e-29 131.3 115 54.8
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 4.7e-29 131.3 122 54.1
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 4.7e-29 131.3 122 54.9
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 4.7e-29 131.3 118 55.1
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 4.7e-29 131.3 119 54.6
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 6.1e-29 131.0 125 54.4
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 8.0e-29 130.6 122 54.1
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 8.0e-29 130.6 122 54.1
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 1.0e-28 130.2 115 54.8
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 1.0e-28 130.2 122 53.3
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.0e-28 130.2 118 59.3
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.0e-28 130.2 121 56.2
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 1.4e-28 129.8 116 58.6
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 1.8e-28 129.4 121 55.4
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 1.8e-28 129.4 118 58.5
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.3e-28 129.0 114 58.8
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 3.0e-28 128.6 116 56.0
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 4.0e-28 128.3 119 53.8
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 5.2e-28 127.9 121 52.1
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 5.2e-28 127.9 123 52.0
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 5.2e-28 127.9 139 48.9
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 6.8e-28 127.5 124 54.8
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 6.8e-28 127.5 121 54.5
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 6.8e-28 127.5 121 56.2
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 6.8e-28 127.5 118 53.4
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 6.8e-28 127.5 120 52.5
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 8.9e-28 127.1 116 56.0
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.2e-27 126.7 116 56.9
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.5e-27 126.3 116 56.9
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 2.6e-27 125.6 121 54.5
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 2.6e-27 125.6 123 55.3
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 3.4e-27 125.2 116 55.2
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.4e-27 125.2 113 56.6
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 4.4e-27 124.8 133 51.9
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 4.4e-27 124.8 119 55.5
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 5.8e-27 124.4 114 57.0
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 5.8e-27 124.4 123 53.7
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 9.8e-27 123.6 123 53.7
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 9.8e-27 123.6 118 52.5
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.3e-26 123.2 116 55.2
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 1.3e-26 123.2 123 54.5
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 2.9e-26 122.1 115 53.9
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 6.4e-26 120.9 115 53.9
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 8.3e-26 120.6 122 53.3
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 1.4e-25 119.8 133 49.6
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 1.9e-25 119.4 117 55.6
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 4.1e-25 118.2 116 51.7
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 4.1e-25 118.2 122 52.5
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 7.0e-25 117.5 117 52.1
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 9.2e-25 117.1 114 50.0
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 1.6e-24 116.3 90 61.1
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 6.0e-24 114.4 114 50.9
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 7.8e-24 114.0 117 53.0
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 1.3e-23 113.2 120 50.0
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 1.7e-23 112.8 122 51.6
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 3.9e-23 111.7 115 51.3
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 3.9e-23 111.7 122 52.5
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 5.0e-23 111.3 115 50.4
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 6.6e-23 110.9 120 49.2
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 4.3e-22 108.2 116 47.4
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.2e-21 106.7 115 47.8
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 2.1e-21 105.9 116 50.0
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 3.1e-20 102.1 129 43.4
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 8.9e-20 100.5 117 48.7
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 1.2e-19 100.1 115 47.8
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 2.0e-19 99.4 127 41.7
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 2.6e-19 99.0 65 61.5
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 1.3e-18 96.7 116 45.7
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.7e-18 95.1 110 45.5
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 4.9e-18 94.7 105 52.4
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.4e-17 93.2 136 40.4
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 4.1e-17 91.7 82 53.7
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 1.2e-16 90.1 88 50.0
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 4.6e-16 88.2 117 39.3
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 3.0e-15 85.5 125 40.0
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 2.5e-14 82.4 109 40.4
Nitab4.5_0011997g0010 Nicotiana tabacum HOM05D005269 ORTHO05D006429 4.3e-14 81.6 124 47.6
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 3.6e-13 78.6 89 42.7
Nitab4.5_0002284g0060 Nicotiana tabacum HOM05D005269 ORTHO05D006429 6.2e-13 77.8 124 46.0
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 1.4e-12 76.6 59 55.9
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 1.4e-12 76.6 97 41.2
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 2.3e-12 75.9 84 50.0
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 3.1e-12 75.5 114 39.5
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 4.0e-12 75.1 99 41.4
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 5.2e-12 74.7 55 56.4
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.2e-11 73.6 130 33.8
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 1.5e-11 73.2 113 37.2
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 2.6e-11 72.4 52 61.5
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.7e-10 69.7 66 45.5
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 3.7e-10 68.6 71 47.9
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 1.4e-09 66.6 110 37.3
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 3.2e-09 65.5 151 29.8
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 5.4e-09 64.7 128 33.6
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 3.5e-08 62.0 103 37.9
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.3e-07 60.1 84 46.4
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 5.1e-07 58.2 75 42.7
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 4.3e-06 55.1 49 44.9


User provided reference genes

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