Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 1.9e-235 818.9 460 100.0
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 5.5e-190 667.9 479 81.6
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 2.0e-187 659.4 479 81.0
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 4.8e-178 628.2 479 79.7
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 8.5e-175 617.5 479 77.7
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 6.7e-172 607.8 479 77.2
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 9.4e-166 587.4 475 74.7
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.1e-142 510.8 483 66.9
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.2e-138 496.5 484 63.6
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 1.4e-137 493.8 480 64.0
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 5.4e-137 491.9 488 63.1
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 5.2e-132 475.3 483 62.7
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 3.7e-130 469.2 484 62.2
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 1.0e-127 461.1 482 62.0
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 1.3e-127 460.7 483 61.3
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 3.9e-127 459.1 484 61.6
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 8.6e-127 458.0 483 61.3
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 1.9e-126 456.8 471 60.7
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.9e-126 456.8 483 61.3
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 3.3e-126 456.1 489 62.2
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 9.5e-126 454.5 481 63.2
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 1.4e-124 450.7 425 62.8
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 8.9e-124 448.0 484 61.4
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 2.0e-123 446.8 473 63.0
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 5.8e-123 445.3 485 62.5
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 2.4e-121 439.9 487 60.4
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 2.1e-120 436.8 446 62.3
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 1.3e-119 434.1 470 61.1
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 1.5e-118 430.6 481 58.0
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 2.4e-116 423.3 475 60.0
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 5.2e-116 422.2 484 58.9
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 5.2e-116 422.2 462 60.0
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 5.2e-116 422.2 476 55.5
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 8.9e-116 421.4 478 59.6
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 4.4e-115 419.1 485 56.3
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 4.4e-115 419.1 467 60.0
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 5.8e-115 418.7 462 60.0
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 7.6e-115 418.3 484 58.1
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.3e-114 417.5 484 58.5
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 1.3e-114 417.5 478 57.5
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 6.4e-114 415.2 441 56.2
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.4e-114 415.2 483 57.1
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 1.1e-113 414.5 481 59.5
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.1e-113 414.5 462 59.3
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 3.2e-113 412.9 478 58.6
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 9.3e-113 411.4 472 57.6
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 1.2e-112 411.0 466 58.8
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.2e-112 411.0 477 58.1
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 1.6e-112 410.6 513 54.2
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 6.0e-112 408.7 448 57.1
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 2.3e-111 406.8 466 55.6
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 6.6e-111 405.2 422 62.1
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 9.6e-110 401.4 451 58.1
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 1.3e-109 401.0 570 49.6
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 1.6e-109 400.6 502 56.2
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 1.6e-109 400.6 483 55.1
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 1.4e-108 397.5 479 54.7
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 2.4e-108 396.7 468 57.9
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 5.3e-108 395.6 480 57.7
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 9.0e-108 394.8 479 57.0
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 3.4e-107 392.9 472 54.9
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 4.5e-107 392.5 488 54.7
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 5.8e-107 392.1 471 55.4
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 7.6e-107 391.7 497 55.7
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 3.8e-106 389.4 517 52.2
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.4e-105 386.7 479 56.2
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 3.2e-105 386.3 476 53.8
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 7.9e-104 381.7 466 56.9
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 1.3e-103 380.9 479 56.2
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 2.3e-103 380.2 481 54.9
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 2.3e-103 380.2 478 54.2
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 5.1e-103 379.0 502 52.2
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 5.6e-102 375.6 469 54.8
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 1.8e-100 370.5 491 52.5
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 3.1e-100 369.8 471 56.1
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 5.3e-100 369.0 479 54.7
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 5.3e-100 369.0 480 54.4
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 6.9e-100 368.6 435 56.1
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 6.9e-100 368.6 435 55.6
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 9.0e-100 368.2 454 56.4
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 1.2e-99 367.9 483 54.9
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.5e-99 367.5 481 53.2
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 4.5e-99 365.9 461 51.8
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 2.2e-98 363.6 508 50.6
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 4.9e-98 362.5 450 54.2
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 1.4e-97 360.9 488 53.3
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 4.2e-97 359.4 459 53.4
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 7.1e-97 358.6 401 57.1
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 3.5e-96 356.3 474 53.8
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 6.0e-96 355.5 478 55.0
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 6.7e-95 352.1 363 62.8
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 8.7e-95 351.7 473 51.8
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 7.4e-94 348.6 479 51.8
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 9.6e-94 348.2 379 57.3
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 1.6e-93 347.4 496 50.2
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 2.8e-93 346.7 580 45.3
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 6.2e-93 345.5 339 64.6
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 2.4e-92 343.6 479 54.1
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 6.9e-92 342.0 446 51.8
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 2.2e-90 337.0 476 49.6
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 1.1e-89 334.7 495 50.1
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 2.7e-88 330.1 531 45.4
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 1.3e-87 327.8 512 48.0
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 3.9e-87 326.2 439 53.8
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 3.3e-86 323.2 469 51.2
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 2.4e-84 317.0 466 50.4
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 3.1e-84 316.6 444 50.9
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 4.1e-84 316.2 245 73.1
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 2.6e-83 313.5 436 51.1
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 1.7e-82 310.8 473 49.7
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 2.5e-81 307.0 458 49.8
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.2e-81 306.2 453 50.1
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 1.2e-80 304.7 462 49.6
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 2.6e-75 287.0 447 44.7
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 4.5e-75 286.2 470 44.3
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.9e-74 283.5 452 48.5
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 2.7e-72 276.9 435 48.7
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 2.0e-70 270.8 323 57.0
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 3.3e-70 270.0 287 62.7
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 2.2e-69 267.3 265 65.3
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 4.8e-69 266.2 476 43.3
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 6.3e-69 265.8 476 45.6
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 4.7e-64 249.6 422 45.5
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 1.1e-62 245.0 422 42.7
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 1.2e-59 235.0 487 41.1
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 8.5e-58 228.8 267 58.1
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 6.3e-53 212.6 394 42.6
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 4.2e-41 173.3 434 34.6
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 9.5e-41 172.2 475 32.8
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 3.8e-34 150.2 268 42.9
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 1.6e-32 144.8 437 32.3
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 9.2e-28 129.0 183 48.6
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 8.6e-26 122.5 110 59.1
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 5.6e-25 119.8 79 73.4
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 1.8e-23 114.8 67 77.6
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.6e-22 110.9 175 46.9
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 2.2e-21 107.8 176 42.0
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 2.9e-21 107.5 463 29.6
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 6.0e-19 99.8 285 31.6
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 6.2e-16 89.7 130 45.4
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 8.1e-16 89.4 191 42.4
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 1.8e-15 88.2 162 46.9
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 3.7e-13 80.5 318 28.0
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 1.4e-12 78.6 256 33.6
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 1.4e-12 78.6 184 40.2
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 2.4e-12 77.8 383 25.1
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 9.2e-12 75.9 100 53.0
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 1.0e-10 72.4 173 38.2
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 3.0e-10 70.9 152 40.1
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 6.6e-10 69.7 71 50.7
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 3.3e-09 67.4 78 53.8
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 1.1e-07 62.4 191 37.7
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 2.0e-06 58.2 142 38.0
CDE01G0591 Ceratophyllum demersum HOM05D058208 ORTHO05D130204 4.4e-06 57.0 60 43.3
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 5.8e-06 56.6 182 37.4


User provided reference genes

Program Settings