Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 5.4e-34 147.1 76 100.0
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.8e-29 132.1 76 90.8
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 8.9e-29 129.8 77 88.3
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 2.2e-27 125.2 79 84.8
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.7e-24 115.5 66 89.4
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 8.6e-24 113.2 76 75.0
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.1e-23 112.8 72 79.2
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 1.9e-23 112.1 76 77.6
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 2.5e-23 111.7 67 83.6
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 2.5e-23 111.7 76 77.6
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 3.3e-23 111.3 76 77.6
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 3.3e-23 111.3 76 75.0
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 4.3e-23 110.9 76 76.3
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 7.3e-23 110.2 65 83.1
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 7.3e-23 110.2 71 80.3
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 7.3e-23 110.2 65 81.5
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 1.2e-22 109.4 76 76.3
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.6e-22 109.0 63 82.5
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.6e-22 109.0 63 82.5
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 2.1e-22 108.6 71 78.9
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 2.8e-22 108.2 71 77.5
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 2.8e-22 108.2 71 77.5
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 2.8e-22 108.2 65 83.1
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 2.8e-22 108.2 76 73.7
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 2.8e-22 108.2 63 84.1
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 3.6e-22 107.8 76 75.0
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 3.6e-22 107.8 65 81.5
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 4.7e-22 107.5 64 85.9
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 4.7e-22 107.5 76 73.7
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 4.7e-22 107.5 76 72.4
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 6.2e-22 107.1 74 71.6
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 6.2e-22 107.1 63 82.5
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 6.2e-22 107.1 71 77.5
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 6.2e-22 107.1 71 77.5
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 6.2e-22 107.1 62 80.6
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 6.2e-22 107.1 71 78.9
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 6.2e-22 107.1 76 73.7
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 8.1e-22 106.7 75 72.0
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 8.1e-22 106.7 76 73.7
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 1.1e-21 106.3 62 82.3
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 1.4e-21 105.9 65 80.0
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.8e-21 105.5 76 71.1
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.8e-21 105.5 65 78.5
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.8e-21 105.5 76 69.7
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 2.3e-21 105.1 71 71.8
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 2.3e-21 105.1 65 75.4
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 3.1e-21 104.8 69 73.9
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 3.1e-21 104.8 64 76.6
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 4.0e-21 104.4 75 72.0
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 4.0e-21 104.4 63 84.1
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 4.0e-21 104.4 76 69.7
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 4.0e-21 104.4 63 81.0
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 5.2e-21 104.0 81 70.4
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 5.2e-21 104.0 64 78.1
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 6.8e-21 103.6 65 76.9
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 6.8e-21 103.6 65 73.8
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 6.8e-21 103.6 75 69.3
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 8.9e-21 103.2 58 84.5
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 8.9e-21 103.2 71 74.6
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 8.9e-21 103.2 69 73.9
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 1.2e-20 102.8 64 78.1
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 1.2e-20 102.8 64 78.1
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 1.2e-20 102.8 64 75.0
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 1.5e-20 102.4 75 72.0
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 1.5e-20 102.4 62 77.4
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 1.5e-20 102.4 73 67.1
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 1.5e-20 102.4 74 71.6
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 1.5e-20 102.4 63 79.4
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 2.0e-20 102.1 65 78.5
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 2.0e-20 102.1 73 74.0
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 2.0e-20 102.1 77 71.4
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 2.6e-20 101.7 59 84.7
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 2.6e-20 101.7 62 82.3
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 2.6e-20 101.7 74 68.9
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 3.4e-20 101.3 63 82.5
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 4.4e-20 100.9 62 80.6
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 4.4e-20 100.9 62 80.6
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 4.4e-20 100.9 62 80.6
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 5.8e-20 100.5 69 72.5
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 5.8e-20 100.5 65 76.9
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 5.8e-20 100.5 76 68.4
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 7.5e-20 100.1 69 72.5
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 7.5e-20 100.1 64 75.0
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 9.9e-20 99.8 71 71.8
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 9.9e-20 99.8 59 83.1
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 9.9e-20 99.8 73 69.9
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 9.9e-20 99.8 65 75.4
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 9.9e-20 99.8 64 73.4
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 1.3e-19 99.4 62 80.6
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 1.3e-19 99.4 65 75.4
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 1.3e-19 99.4 65 76.9
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 1.3e-19 99.4 73 69.9
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 1.3e-19 99.4 73 67.1
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 1.7e-19 99.0 76 68.4
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 1.7e-19 99.0 59 81.4
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 1.7e-19 99.0 59 81.4
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 2.2e-19 98.6 59 81.4
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 2.2e-19 98.6 64 76.6
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 2.9e-19 98.2 62 80.6
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 3.7e-19 97.8 60 75.0
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 3.7e-19 97.8 64 71.9
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 4.9e-19 97.4 70 68.6
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 4.9e-19 97.4 76 68.4
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 6.4e-19 97.1 64 71.9
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 1.1e-18 96.3 58 77.6
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 1.1e-18 96.3 71 69.0
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 1.4e-18 95.9 73 71.2
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 1.9e-18 95.5 65 72.3
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 2.4e-18 95.1 55 83.6
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 2.4e-18 95.1 68 70.6
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 4.1e-18 94.4 65 70.8
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 4.1e-18 94.4 63 76.2
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 4.1e-18 94.4 59 84.7
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 5.4e-18 94.0 73 68.5
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 5.4e-18 94.0 54 81.5
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 7.1e-18 93.6 56 78.6
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 7.1e-18 93.6 56 78.6
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 7.1e-18 93.6 56 78.6
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 9.2e-18 93.2 73 67.1
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 9.2e-18 93.2 65 67.7
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 9.2e-18 93.2 65 67.7
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 9.2e-18 93.2 73 67.1
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 1.2e-17 92.8 61 68.9
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.2e-17 92.8 73 65.8
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 1.2e-17 92.8 59 71.2
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 1.2e-17 92.8 76 60.5
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 1.2e-17 92.8 76 60.5
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 1.6e-17 92.4 64 70.3
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 2.1e-17 92.0 68 69.1
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 4.6e-17 90.9 56 76.8
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 6.0e-17 90.5 56 76.8
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 1.0e-16 89.7 75 60.0
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 1.3e-16 89.4 55 78.2
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 6.6e-16 87.0 73 64.4
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 1.9e-15 85.5 66 62.1
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.1e-13 79.7 71 54.9
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.1e-13 79.7 61 62.3
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.1e-13 79.7 71 54.9
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 1.4e-13 79.3 63 61.9
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 3.1e-13 78.2 60 61.7
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 4.0e-13 77.8 58 70.7
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 3.4e-12 74.7 58 69.0
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 4.4e-12 74.3 56 64.3
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 4.4e-12 74.3 56 64.3
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 5.8e-12 73.9 40 85.0
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 7.6e-12 73.6 58 58.6
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 1.3e-11 72.8 71 50.7
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 1.3e-11 72.8 51 66.7
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 1.7e-11 72.4 58 55.2
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 2.2e-11 72.0 69 55.1
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 4.9e-11 70.9 71 52.1
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 8.4e-11 70.1 51 60.8
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 9.2e-10 66.6 67 47.8
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 3.5e-09 64.7 58 50.0
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 5.6e-07 57.4 50 60.0
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 3.6e-06 54.7 67 37.3
Glyma.03G125300 Glycine max HOM05D004624 ORTHO05D005357 4.7e-06 54.3 37 73.0


User provided reference genes

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