Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 0.0e+00 1489.2 819 100.0
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1340.1 824 88.8
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1331.6 824 86.2
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 0.0e+00 1311.6 825 84.6
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 0.0e+00 1307.0 825 84.2
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 0.0e+00 1271.9 823 85.7
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 0.0e+00 1226.1 826 83.5
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 0.0e+00 1109.4 827 72.8
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1104.4 834 71.5
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 0.0e+00 1094.0 829 71.0
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 0.0e+00 1085.5 833 69.4
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 0.0e+00 1083.9 834 69.5
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 0.0e+00 1075.1 833 69.0
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 1.5e-310 1069.3 834 68.2
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 2.5e-310 1068.5 834 69.9
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 3.2e-310 1068.1 835 69.0
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 5.5e-310 1067.4 857 69.2
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 1.6e-309 1065.8 830 68.7
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 8.8e-308 1060.1 834 68.9
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 7.5e-307 1057.0 828 68.8
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 2.2e-306 1055.4 831 67.6
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 9.1e-305 1050.0 831 68.7
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 1.2e-304 1049.7 829 67.8
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 1.6e-304 1049.3 870 65.7
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 2.7e-304 1048.5 830 68.3
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 3.5e-304 1048.1 799 71.1
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 4.5e-304 1047.7 831 68.4
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 1.0e-303 1046.6 831 68.1
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 2.3e-303 1045.4 829 66.6
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 2.9e-303 1045.0 830 67.8
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 3.8e-303 1044.6 831 68.8
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 5.0e-303 1044.3 829 66.5
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 6.6e-303 1043.9 831 67.9
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 9.5e-302 1040.0 829 66.6
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 5.2e-300 1034.2 841 67.2
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 8.9e-300 1033.5 829 66.1
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 1.3e-298 1029.6 826 68.5
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 2.2e-298 1028.9 856 66.8
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 7.0e-297 1023.8 826 68.0
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 3.9e-295 1018.1 830 68.0
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 3.3e-294 1015.0 795 68.1
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 4.3e-294 1014.6 834 66.3
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 6.1e-293 1010.7 832 64.7
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 1.4e-292 1009.6 824 68.4
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 1.8e-292 1009.2 825 66.1
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 6.8e-292 1007.3 826 65.4
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 1.2e-291 1006.5 833 63.9
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 2.0e-291 1005.7 836 65.9
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 2.9e-290 1001.9 813 65.9
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 1.2e-288 996.5 825 64.6
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 3.5e-288 995.0 759 69.7
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 3.5e-288 995.0 899 62.6
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 1.9e-286 989.2 833 64.9
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 1.6e-285 986.1 822 65.9
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 4.7e-285 984.6 825 64.8
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 6.2e-285 984.2 825 64.6
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 1.4e-284 983.0 831 64.5
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 1.8e-284 982.6 826 63.8
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 1.5e-283 979.5 833 63.1
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 1.5e-283 979.5 836 64.6
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 4.4e-283 978.0 832 64.7
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 7.5e-283 977.2 826 65.1
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 4.9e-282 974.5 854 63.5
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 4.9e-282 974.5 823 64.5
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 7.0e-281 970.7 833 64.2
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 9.2e-281 970.3 822 65.6
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 3.0e-279 965.3 834 63.5
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 6.6e-279 964.1 834 63.8
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 1.1e-278 963.4 825 62.9
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 2.6e-275 952.2 769 67.8
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 3.4e-275 951.8 825 64.5
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 4.4e-275 951.4 826 62.6
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 9.9e-275 950.3 827 62.4
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 1.7e-274 949.5 827 62.6
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 1.7e-274 949.5 825 64.7
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 8.3e-274 947.2 829 62.5
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.1e-273 946.8 827 62.5
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 1.6e-272 943.0 829 62.0
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 3.5e-272 941.8 827 62.3
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 6.0e-272 941.0 827 62.4
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 7.8e-272 940.6 931 57.3
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 1.5e-270 936.4 843 61.1
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 1.2e-269 933.3 860 60.3
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 2.8e-269 932.2 839 61.7
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 1.2e-267 926.8 837 62.2
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 2.0e-267 926.0 869 61.9
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 2.0e-267 926.0 758 66.2
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 1.5e-246 856.7 826 56.5
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 2.8e-245 852.4 832 56.0
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 1.1e-238 830.5 831 56.4
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 1.9e-238 829.7 825 57.1
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.7e-234 816.6 680 64.7
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 1.9e-233 813.1 870 52.4
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 9.1e-220 767.7 833 56.3
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 1.5e-211 740.3 679 62.9
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 5.7e-206 721.8 605 65.3
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 9.8e-174 614.8 634 60.1
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 2.5e-169 600.1 832 45.0
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 2.8e-168 596.7 786 43.8
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 3.5e-163 579.7 764 43.8
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 5.1e-146 522.7 872 38.1
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 6.6e-146 522.3 324 80.6
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 3.6e-144 516.5 547 55.0
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 6.2e-144 515.8 377 68.4
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 6.4e-141 505.8 499 59.1
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 8.4e-141 505.4 810 38.9
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 7.4e-137 492.3 839 38.1
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 1.8e-130 471.1 418 63.9
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.0e-114 418.7 271 76.4
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 3.9e-106 390.2 459 51.9
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 2.2e-101 374.4 273 68.9
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.1e-95 355.5 275 61.1
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 5.5e-84 316.6 323 55.1
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.3e-80 305.4 243 70.8
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 1.8e-63 248.4 817 28.3
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 8.3e-48 196.4 364 37.1
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 3.5e-46 191.0 853 22.7
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 6.6e-45 186.8 163 61.3
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 2.2e-40 171.8 231 49.8
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 3.2e-39 167.9 125 70.4
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 3.5e-38 164.5 119 68.1
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 1.2e-33 149.4 96 77.1
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 4.2e-31 141.0 101 72.3
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 8.1e-27 126.7 207 39.1
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.7e-24 119.0 69 89.9
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 3.5e-22 111.3 72 76.4
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 3.5e-22 111.3 70 72.9
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 3.5e-22 111.3 70 72.9
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.5e-20 105.9 211 37.0
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 9.6e-20 103.2 123 49.6
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.1e-15 89.7 79 58.2
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 1.2e-14 86.3 86 60.5
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 6.7e-13 80.5 185 38.4
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 5.6e-12 77.4 68 63.2
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 1.4e-07 62.8 47 66.0
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 4.2e-07 61.2 64 59.4


User provided reference genes

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