Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 0.0e+00 1701.4 872 100.0
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 0.0e+00 1476.8 848 90.1
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 0.0e+00 1465.7 859 88.1
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 0.0e+00 1459.9 859 87.7
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 0.0e+00 1458.0 859 87.9
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 0.0e+00 1455.3 860 87.9
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 0.0e+00 1424.5 848 87.6
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1169.8 849 71.0
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1169.5 849 70.9
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 0.0e+00 1128.2 855 69.6
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 0.0e+00 1126.7 851 68.4
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 0.0e+00 1117.1 883 66.4
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 0.0e+00 1112.1 857 66.7
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 0.0e+00 1111.3 860 67.9
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 0.0e+00 1094.7 849 67.5
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1092.8 811 69.7
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 0.0e+00 1087.8 848 65.9
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 0.0e+00 1084.3 860 67.4
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 0.0e+00 1079.7 848 66.2
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 6.0e-312 1074.3 848 66.2
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 1.2e-311 1073.2 848 66.5
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 1.2e-311 1072.8 856 64.8
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 4.5e-310 1067.8 860 64.7
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 1.7e-309 1065.8 848 65.7
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 2.2e-309 1065.4 857 65.8
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 2.2e-309 1065.4 849 66.7
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 2.9e-309 1065.1 849 65.4
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 1.5e-308 1062.8 857 65.7
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 2.1e-307 1058.9 857 65.3
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 1.3e-304 1049.7 854 65.3
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 1.7e-304 1049.3 850 64.8
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 2.2e-304 1048.9 863 64.4
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 1.4e-303 1046.2 820 66.6
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 2.7e-302 1042.0 859 63.9
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 2.7e-302 1042.0 859 63.8
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 5.0e-301 1037.7 850 64.4
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 1.5e-300 1036.2 805 67.6
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 3.2e-300 1035.0 825 66.3
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 4.2e-300 1034.6 858 63.6
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 3.6e-299 1031.6 857 63.7
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 4.7e-299 1031.2 857 63.6
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 1.4e-298 1029.6 849 64.1
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 2.3e-298 1028.9 857 63.6
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 4.0e-298 1028.1 849 64.0
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 4.4e-297 1024.6 850 63.6
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 5.7e-297 1024.2 857 63.6
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 9.8e-297 1023.5 857 63.2
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 5.4e-295 1017.7 849 63.3
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 1.2e-294 1016.5 857 63.2
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 5.9e-294 1014.2 845 62.1
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 1.1e-292 1010.0 855 62.5
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 1.1e-292 1010.0 848 62.7
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 1.5e-292 1009.6 845 61.9
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 1.8e-290 1002.7 851 61.9
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 4.0e-290 1001.5 857 62.3
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 1.2e-289 1000.0 864 62.4
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 8.3e-288 993.8 862 61.0
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 1.1e-287 993.4 858 61.4
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 5.4e-287 991.1 846 62.3
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 1.6e-286 989.6 861 61.9
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 2.9e-285 985.3 855 62.6
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 1.9e-284 982.6 860 62.0
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 3.0e-282 975.3 854 61.2
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 3.0e-282 975.3 872 60.7
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 7.5e-281 970.7 853 61.3
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 9.8e-281 970.3 853 62.0
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 3.7e-280 968.4 849 61.2
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 4.9e-280 968.0 841 61.4
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 8.3e-280 967.2 852 61.0
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 1.8e-279 966.1 855 60.8
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 3.2e-279 965.3 846 60.5
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 5.4e-279 964.5 853 60.7
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 5.9e-278 961.1 860 59.8
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 5.9e-278 961.1 854 61.5
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 7.8e-278 960.7 872 58.9
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 1.7e-277 959.5 895 58.9
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 6.6e-277 957.6 801 64.5
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 7.3e-276 954.1 804 62.7
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 8.0e-275 950.7 856 60.5
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 2.3e-274 949.1 852 60.8
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 4.4e-273 944.9 854 60.8
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 1.3e-272 943.3 871 59.7
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 9.5e-268 927.2 821 60.8
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 3.6e-267 925.2 857 56.1
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 6.2e-267 924.5 843 59.4
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 1.2e-265 920.2 844 59.8
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 3.5e-262 908.7 818 60.9
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 2.3e-261 906.0 750 64.0
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 3.0e-261 905.6 847 56.3
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 2.7e-254 882.5 846 56.9
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 2.3e-253 879.4 747 63.1
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 6.7e-237 824.7 859 53.1
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 7.1e-231 804.7 643 65.8
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 5.1e-229 798.5 855 54.2
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 1.5e-228 797.0 821 54.3
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 5.3e-226 788.5 846 50.9
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 2.3e-221 773.1 685 62.3
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 3.2e-199 699.5 750 50.8
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 7.8e-169 598.6 730 46.7
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 1.4e-165 587.8 519 61.8
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 3.5e-161 573.2 431 68.2
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 2.5e-135 487.3 827 36.8
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 6.4e-131 472.6 864 36.1
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 2.7e-129 467.2 846 36.9
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 1.7e-99 368.2 309 61.8
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 1.3e-94 352.1 1009 29.1
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 2.0e-47 195.3 189 57.7
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 8.1e-25 120.2 133 50.4
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 3.0e-19 101.7 56 89.3
Dinv07685 Davidia involucrata HOM05D006510 ORTHO05D008171 6.6e-19 100.5 92 57.6
MCO09G591 Micromonas commoda HOM05D006510 ORTHO05D008171 1.5e-18 99.4 579 24.4
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 1.5e-18 99.4 56 83.9
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 1.7e-14 85.9 57 71.9
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 1.9e-13 82.4 916 20.3
VMungo1127G1894 Vigna mungo HOM05D006510 ORTHO05D008171 2.8e-09 68.6 61 54.1
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 3.6e-09 68.2 99 49.5
Cpa.g.c45723 Carica papaya HOM05D006510 ORTHO05D008171 8.1e-09 67.0 58 55.2
unitig_46.g18270 Utricularia gibba HOM05D006510 ORTHO05D008171 1.1e-08 66.6 60 53.3
Hund07777 Selenicereus undatus HOM05D006510 ORTHO05D008171 4.0e-08 64.7 50 62.0
Lsat_1_v5_gn_9_51101 Lactuca sativa HOM05D003114 ORTHO05D003519 9.9e-07 60.1 48 58.3
arahy.Tifrunner.gnm1.ann1.JPYC3C Arachis hypogaea HOM05D006510 ORTHO05D008171 1.7e-06 59.3 44 61.4
BcaB01g03423 Brassica carinata HOM05D001990 ORTHO05D002033 4.9e-06 57.8 88 38.6
PRCOL_00003865 Prasinoderma coloniale HOM05D006510 ORTHO05D008171 8.4e-06 57.0 593 22.3
SEGI_32298 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 8.4e-06 57.0 48 47.9


User provided reference genes

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