Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 6.6e-232 807.0 400 100.0
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 4.8e-150 535.0 294 90.8
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 1.2e-143 513.8 397 65.0
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 7.2e-138 494.6 380 62.6
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 2.2e-134 483.0 382 62.8
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 4.5e-132 475.3 333 67.6
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 5.9e-132 474.9 400 58.0
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 8.6e-131 471.1 402 58.5
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 1.9e-130 469.9 384 58.6
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 2.3e-128 463.0 388 57.0
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 2.3e-128 463.0 400 57.5
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 3.0e-128 462.6 386 57.8
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 4.0e-128 462.2 402 56.5
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 2.6e-127 459.5 385 59.2
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 9.8e-127 457.6 359 61.0
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 1.7e-126 456.8 359 61.0
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 2.2e-126 456.4 387 57.9
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 2.2e-126 456.4 420 55.0
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 1.1e-125 454.1 390 55.6
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.4e-125 453.8 460 51.3
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 7.0e-125 451.4 384 57.8
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 5.9e-124 448.4 384 59.1
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 4.7e-121 438.7 387 55.6
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 6.8e-120 434.9 390 55.4
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 8.9e-120 434.5 402 56.5
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 8.9e-120 434.5 387 54.3
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 7.5e-119 431.4 396 55.1
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 9.8e-119 431.0 386 55.4
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 2.2e-118 429.9 383 55.4
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 3.7e-118 429.1 394 56.3
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 3.2e-117 426.0 387 55.3
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 3.2e-117 426.0 386 56.0
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 5.4e-117 425.2 381 55.4
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.6e-116 423.7 395 53.4
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 7.8e-116 421.4 388 56.2
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 3.0e-115 419.5 394 55.1
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 6.6e-115 418.3 384 57.0
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 3.3e-114 416.0 471 48.6
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 9.5e-114 414.5 382 54.7
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 8.9e-112 407.9 371 54.4
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 7.1e-109 398.3 377 53.6
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 2.7e-108 396.4 411 51.3
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 4.6e-108 395.6 384 53.1
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 6.0e-108 395.2 482 44.2
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 1.1e-106 391.0 376 54.3
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 4.7e-105 385.6 380 51.6
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 8.1e-105 384.8 401 50.1
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 1.8e-104 383.6 370 54.6
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 1.2e-103 380.9 392 50.0
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.0e-103 380.2 388 50.3
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 3.4e-103 379.4 417 50.4
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 4.4e-103 379.0 413 47.2
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 4.9e-102 375.6 383 48.6
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 3.9e-99 365.9 384 47.7
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 8.6e-99 364.8 383 48.6
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 7.3e-98 361.7 396 48.5
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 2.1e-97 360.1 397 48.4
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.2e-94 350.1 380 48.4
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 6.4e-94 348.6 397 47.9
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 7.8e-92 341.7 311 54.7
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 2.3e-91 340.1 422 43.6
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 2.3e-91 340.1 363 49.0
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 1.9e-90 337.0 292 59.6
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 2.5e-90 336.7 391 48.3
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 6.2e-89 332.0 369 47.7
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 1.8e-88 330.5 396 48.0
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 3.1e-88 329.7 293 58.4
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 1.5e-87 327.4 365 46.6
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 1.3e-86 324.3 405 44.4
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 1.3e-86 324.3 281 59.8
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 1.7e-86 323.9 370 46.8
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 1.7e-86 323.9 370 46.8
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 3.8e-86 322.8 370 46.8
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.4e-85 320.9 396 43.4
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.9e-85 320.5 230 63.5
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 4.2e-85 319.3 405 42.7
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 2.5e-82 310.1 403 41.4
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 3.4e-79 299.7 329 52.0
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 1.1e-77 294.7 263 57.4
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 7.1e-77 292.0 379 45.1
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 3.3e-74 283.1 292 52.1
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 5.6e-74 282.3 213 62.0
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 2.1e-73 280.4 301 51.5
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 4.5e-71 272.7 279 47.7
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 6.5e-70 268.9 270 50.0
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 2.1e-68 263.8 260 53.1
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 5.1e-67 259.2 370 39.7
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 2.5e-66 256.9 215 57.2
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 1.6e-65 254.2 267 52.8
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 1.1e-64 251.5 281 46.3
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 6.9e-64 248.8 265 52.5
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 1.3e-62 244.6 222 55.4
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.2e-62 243.8 270 51.5
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 6.5e-62 242.3 270 51.1
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 2.5e-61 240.4 193 60.1
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 9.3e-61 238.4 249 51.0
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 3.9e-59 233.0 252 51.6
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 5.1e-59 232.6 290 44.8
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 1.8e-56 224.2 223 50.7
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.6e-55 220.3 251 48.6
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 5.9e-55 219.2 251 49.0
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.3e-54 218.0 299 41.8
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 5.0e-54 216.1 251 48.2
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 6.5e-54 215.7 251 47.8
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 8.5e-54 215.3 270 47.8
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 3.6e-52 209.9 247 47.4
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 6.1e-52 209.1 247 48.2
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 7.9e-52 208.8 218 50.9
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 3.0e-51 206.8 254 46.9
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 3.9e-51 206.5 251 45.0
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 6.7e-51 205.7 254 47.2
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 1.5e-50 204.5 247 47.4
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.5e-50 204.5 254 46.5
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 4.4e-50 203.0 250 45.2
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 5.7e-50 202.6 247 47.4
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.2e-49 200.7 251 45.8
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 3.7e-49 199.9 262 46.2
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 1.8e-48 197.6 247 50.6
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 2.4e-48 197.2 255 49.8
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 3.1e-48 196.8 267 44.9
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 1.2e-47 194.9 247 45.7
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 3.4e-47 193.4 250 45.2
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 2.2e-46 190.7 259 44.8
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.9e-46 190.3 201 51.7
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 8.5e-46 188.7 328 37.2
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 1.4e-45 188.0 205 48.3
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 3.6e-44 183.3 217 48.8
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.8e-43 181.0 279 40.1
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 1.8e-40 171.0 129 61.2
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 5.9e-39 166.0 154 52.6
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 1.9e-37 161.0 149 57.0
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 1.4e-35 154.8 209 42.6
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 1.8e-35 154.5 166 48.2
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 4.4e-34 149.8 261 36.4
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 2.8e-33 147.1 218 40.8
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 2.1e-28 131.0 170 44.7
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 2.6e-26 124.0 72 72.2
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 6.3e-25 119.4 164 44.5
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 1.2e-20 105.1 133 46.6
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 2.1e-20 104.4 64 67.2
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 2.8e-20 104.0 102 52.9
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 1.4e-19 101.7 261 30.7
Cre16.g668650 Chlamydomonas reinhardtii HOM05D001295 ORTHO05D005319 8.6e-14 82.4 137 35.0
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 3.3e-13 80.5 109 39.4
CBR_g21778 Chara braunii HOM05D001295 ORTHO05D005319 2.8e-12 77.4 113 38.9
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 3.0e-11 73.9 71 54.9
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 4.4e-10 70.1 181 31.5
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 1.4e-08 65.1 82 42.7
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 7.0e-08 62.8 83 39.8
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 9.2e-08 62.4 77 42.9
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 3.5e-07 60.5 119 36.1


User provided reference genes

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