Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 9.6e-182 640.6 469 100.0
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 9.6e-182 640.6 469 100.0
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 6.4e-178 627.9 469 94.9
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 7.1e-177 624.4 469 95.1
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 3.8e-114 416.0 489 61.6
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 4.9e-101 372.5 487 54.0
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 5.4e-100 369.0 486 56.0
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 1.6e-99 367.5 480 57.7
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 2.0e-99 367.1 488 56.6
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 3.9e-98 362.8 481 56.8
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 1.9e-97 360.5 487 56.3
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 7.3e-97 358.6 487 56.3
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 2.8e-96 356.7 485 56.7
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 2.8e-96 356.7 485 54.4
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 6.1e-96 355.5 490 57.1
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 6.8e-95 352.1 481 56.1
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 8.3e-93 345.1 496 53.2
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 8.3e-93 345.1 480 55.0
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 1.2e-91 341.3 486 52.1
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 3.5e-91 339.7 474 55.7
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 4.6e-91 339.3 486 53.7
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 1.0e-90 338.2 487 53.4
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 3.0e-90 336.7 419 55.8
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 3.9e-90 336.3 413 55.2
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 8.6e-90 335.1 481 53.8
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 2.5e-89 333.6 489 54.4
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 3.3e-89 333.2 486 51.4
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 3.3e-89 333.2 481 53.2
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 2.1e-88 330.5 425 52.7
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 2.1e-88 330.5 480 50.2
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 2.8e-88 330.1 483 51.3
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 8.0e-88 328.6 484 51.7
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 1.5e-86 324.3 489 53.4
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 4.4e-86 322.8 489 51.7
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 7.5e-86 322.0 481 50.9
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 8.3e-85 318.5 407 58.2
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 1.4e-84 317.8 412 58.0
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 1.4e-84 317.8 404 56.9
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 5.4e-84 315.8 460 53.3
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 9.2e-84 315.1 487 51.7
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 1.2e-83 314.7 481 49.9
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 1.6e-83 314.3 489 48.3
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 3.5e-83 313.2 479 50.7
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 3.5e-83 313.2 479 50.7
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.7e-82 310.8 479 53.0
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 3.0e-82 310.1 409 56.0
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 3.0e-82 310.1 407 53.6
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 6.6e-82 308.9 456 51.1
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 6.6e-82 308.9 479 51.4
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 8.6e-82 308.5 479 49.7
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 8.6e-82 308.5 480 52.5
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 1.1e-81 308.1 466 47.0
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 1.9e-81 307.4 477 52.0
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 1.9e-81 307.4 483 42.9
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 3.3e-81 306.6 481 51.8
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 4.3e-81 306.2 480 47.5
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 7.3e-81 305.4 475 53.3
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 9.5e-81 305.1 483 49.7
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 2.8e-80 303.5 485 46.0
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 3.1e-79 300.1 484 51.7
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 1.5e-78 297.7 405 50.6
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 1.5e-78 297.7 487 47.0
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 2.6e-78 297.0 479 51.1
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 3.4e-78 296.6 480 50.2
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 4.4e-78 296.2 482 52.1
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 9.9e-78 295.0 493 51.7
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 3.7e-77 293.1 483 50.9
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 6.4e-77 292.4 577 45.9
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 2.4e-76 290.4 527 47.4
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 7.1e-76 288.9 369 58.5
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 7.1e-76 288.9 470 53.4
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 3.0e-74 283.5 485 48.5
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 5.1e-74 282.7 481 48.4
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 9.6e-73 278.5 483 43.5
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 6.2e-72 275.8 410 54.1
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 1.5e-70 271.2 478 49.2
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 2.6e-70 270.4 209 70.3
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 6.4e-69 265.8 481 42.2
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 2.1e-67 260.8 211 69.2
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 3.5e-67 260.0 411 51.6
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 6.0e-67 259.2 419 45.3
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 1.1e-65 255.0 381 52.2
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 3.3e-65 253.4 525 38.5
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 5.6e-65 252.7 354 57.1
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 2.4e-63 247.3 210 67.6
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 2.6e-62 243.8 211 63.5
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 1.7e-61 241.1 488 38.9
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.2e-61 240.7 479 39.5
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 8.4e-61 238.8 484 40.7
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 3.2e-60 236.9 481 46.8
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 4.2e-60 236.5 390 53.3
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 4.2e-60 236.5 480 39.2
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 7.1e-60 235.7 513 36.3
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 1.6e-59 234.6 480 49.4
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 1.3e-58 231.5 480 50.8
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 2.3e-58 230.7 407 53.3
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 1.1e-57 228.4 480 47.7
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 1.5e-57 228.0 412 53.4
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 2.5e-57 227.3 480 46.0
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 2.5e-57 227.3 480 46.0
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 2.5e-57 227.3 480 46.0
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 4.8e-56 223.0 395 52.4
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 1.3e-53 214.9 357 50.4
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 1.2e-43 181.8 170 58.8
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 6.9e-39 166.0 138 64.5
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 1.6e-32 144.8 212 44.8
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 6.3e-32 142.9 98 77.6
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 2.4e-31 141.0 98 76.5
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 6.9e-31 139.4 103 70.9
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 1.0e-29 135.6 160 51.2
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 2.2e-29 134.4 151 49.7
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 4.2e-28 130.2 137 56.2
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 4.2e-28 130.2 137 55.5
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 3.6e-27 127.1 126 56.3
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 1.4e-26 125.2 212 39.6
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 3.0e-26 124.0 192 42.2
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 1.1e-25 122.1 139 54.0
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 3.3e-25 120.6 206 40.3
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 5.7e-25 119.8 124 56.5
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 3.7e-24 117.1 139 52.5
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 1.2e-22 112.1 162 50.6
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 2.0e-22 111.3 157 43.9
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 1.6e-19 101.7 68 77.9
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 2.7e-19 100.9 115 55.7
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 2.0e-17 94.7 119 48.7
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 5.7e-17 93.2 86 61.6
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 2.8e-16 90.9 153 41.2
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 1.4e-15 88.6 180 41.1
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 3.1e-15 87.4 68 70.6
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 3.5e-14 84.0 81 58.0
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 3.5e-14 84.0 76 60.5
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 1.5e-12 78.6 216 34.3
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 9.4e-12 75.9 68 60.3
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 6.1e-11 73.2 206 33.0
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 3.0e-10 70.9 126 42.1
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 2.0e-09 68.2 70 51.4
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 3.7e-08 63.9 55 61.8
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 3.7e-08 63.9 55 63.6
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.1e-07 62.4 68 44.1
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 1.1e-07 62.4 69 53.6
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 7.0e-07 59.7 68 45.6
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 1.2e-06 58.9 38 78.9
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 1.6e-06 58.5 126 40.5
QL03p033134 Quercus lobata HOM05D004479 ORTHO05D005597 1.6e-06 58.5 49 63.3
QL08p038027 Quercus lobata HOM05D004479 ORTHO05D337893 5.9e-06 56.6 192 30.7


User provided reference genes

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