Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 1.4e-119 433.3 282 100.0
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 8.5e-117 424.1 280 92.1
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 3.4e-89 332.4 224 74.1
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 4.4e-89 332.0 222 79.7
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 2.8e-88 329.3 219 79.5
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 6.3e-88 328.2 216 74.5
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 1.1e-87 327.4 218 75.2
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.8e-87 326.6 216 79.6
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 1.8e-87 326.6 216 79.6
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 3.1e-87 325.9 219 78.1
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 3.1e-87 325.9 219 78.1
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 3.1e-87 325.9 218 79.8
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 4.1e-87 325.5 216 82.9
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 3.5e-86 322.4 214 76.2
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 5.9e-86 321.6 224 78.1
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 1.7e-85 320.1 213 79.3
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 3.8e-85 318.9 216 79.2
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 3.8e-85 318.9 212 73.6
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 5.0e-85 318.5 215 73.5
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 6.5e-85 318.2 216 79.2
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 8.5e-85 317.8 218 78.4
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 1.1e-84 317.4 224 78.6
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 1.9e-84 316.6 214 80.4
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 4.2e-84 315.5 211 82.0
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 4.2e-84 315.5 207 80.7
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 7.2e-84 314.7 245 66.5
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 9.4e-84 314.3 218 71.6
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 9.4e-84 314.3 215 72.1
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 9.4e-84 314.3 214 79.9
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 2.1e-83 313.2 218 75.7
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 2.1e-83 313.2 214 81.3
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 2.1e-83 313.2 214 72.4
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 2.7e-83 312.8 219 80.4
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 3.6e-83 312.4 214 80.8
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 1.8e-82 310.1 216 77.3
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 1.8e-82 310.1 215 78.6
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 3.0e-82 309.3 207 74.9
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 6.8e-82 308.1 219 74.9
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 8.8e-82 307.8 219 75.3
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 1.2e-81 307.4 218 71.1
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 1.2e-81 307.4 216 67.1
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.5e-81 307.0 213 71.8
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 2.6e-81 306.2 211 79.1
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 4.4e-81 305.4 215 67.9
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 9.8e-81 304.3 218 77.5
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 1.3e-80 303.9 213 70.9
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 1.7e-80 303.5 213 79.3
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 3.7e-80 302.4 216 73.1
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 3.7e-80 302.4 211 71.1
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 6.3e-80 301.6 216 77.3
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 8.3e-80 301.2 219 76.7
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.4e-79 300.4 211 78.2
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 1.8e-79 300.1 216 68.5
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 1.8e-79 300.1 212 77.4
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 2.4e-79 299.7 215 67.0
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 3.1e-79 299.3 215 74.4
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 3.1e-79 299.3 211 77.7
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 4.1e-79 298.9 211 77.7
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 4.1e-79 298.9 211 77.7
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 9.1e-79 297.7 215 68.8
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.2e-78 297.4 225 67.1
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 2.0e-78 296.6 215 75.8
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 2.0e-78 296.6 215 76.3
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 2.7e-78 296.2 222 71.6
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 3.5e-78 295.8 211 77.3
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 1.0e-77 294.3 204 78.9
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.3e-77 293.9 211 69.2
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 2.9e-77 292.7 242 67.8
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 2.9e-77 292.7 247 64.4
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 6.6e-77 291.6 218 71.1
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 1.1e-76 290.8 216 75.9
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 1.1e-76 290.8 210 76.7
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 1.1e-76 290.8 213 65.3
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 1.5e-76 290.4 221 64.7
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 2.5e-76 289.7 216 68.5
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.0e-74 284.3 195 71.3
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 8.9e-74 281.2 213 67.6
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 4.4e-73 278.9 184 83.2
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 8.3e-72 274.6 222 69.8
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 1.4e-71 273.9 189 73.5
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 5.4e-71 271.9 216 63.4
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 7.0e-71 271.6 215 64.2
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 1.2e-70 270.8 224 61.2
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 1.6e-70 270.4 216 62.0
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 3.5e-70 269.2 212 73.1
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.7e-69 266.9 192 69.3
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 8.6e-69 264.6 209 67.9
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 1.9e-68 263.5 205 67.8
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 2.5e-68 263.1 218 63.3
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 2.5e-68 263.1 212 58.0
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 3.3e-68 262.7 196 67.9
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 9.5e-68 261.2 183 70.5
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 3.6e-67 259.2 210 65.7
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 8.0e-67 258.1 210 60.5
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 2.3e-66 256.5 183 76.5
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 4.4e-65 252.3 144 80.6
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 4.4e-65 252.3 213 57.7
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 7.5e-65 251.5 207 58.9
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 7.5e-65 251.5 247 55.1
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 2.0e-62 243.4 223 64.6
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 1.5e-60 237.3 185 62.2
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 1.1e-58 231.1 221 54.8
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 8.9e-58 228.0 160 83.8
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 7.8e-54 214.9 119 82.4
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 2.8e-51 206.5 221 56.6
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 2.5e-44 183.3 148 73.0
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 7.1e-39 165.2 156 57.1
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.2e-38 164.5 123 66.7
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 1.3e-32 144.4 176 44.9
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 3.6e-27 126.3 177 50.3
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.1e-22 110.5 177 40.1
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 1.3e-21 107.8 97 61.9
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 1.8e-21 107.5 70 72.9
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 5.1e-21 105.9 93 63.4
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 1.4e-18 97.8 104 53.8
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.3e-18 95.9 77 63.6
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 6.9e-18 95.5 101 55.4
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 2.6e-17 93.6 139 38.8
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 1.3e-16 91.3 104 64.4
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 6.0e-14 82.4 55 70.9
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 1.0e-13 81.6 120 39.2
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 9.6e-12 75.1 52 71.2
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 4.1e-10 69.7 137 36.5
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 5.9e-09 65.9 58 62.1
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.2e-08 63.9 137 33.6
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 3.8e-08 63.2 135 36.3
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 5.0e-08 62.8 135 35.6
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 1.1e-07 61.6 141 31.9
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.1e-07 61.6 135 34.8
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.1e-07 61.6 135 33.3
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 1.4e-07 61.2 131 29.0
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 1.9e-07 60.8 137 33.6
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 2.5e-07 60.5 139 31.7
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 2.5e-07 60.5 137 35.0
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.2e-07 60.1 112 34.8
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 3.2e-07 60.1 133 35.3
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 4.2e-07 59.7 141 32.6
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 5.5e-07 59.3 143 34.3
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 7.2e-07 58.9 136 32.4
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 9.3e-07 58.5 137 32.1
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 9.3e-07 58.5 145 34.5
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 1.2e-06 58.2 135 33.3
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.6e-06 57.8 137 32.1
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 3.5e-06 56.6 137 33.6
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 3.5e-06 56.6 137 31.4
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 3.5e-06 56.6 112 33.0
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 4.6e-06 56.2 137 34.3
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 6.1e-06 55.8 101 36.6
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 6.1e-06 55.8 134 30.6


User provided reference genes

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