Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G4557 Papaver somniferum HOM05D002567 ORTHO05D006538 0.0e+00 1793.5 1128 100.0
PSO210G0804 Papaver somniferum HOM05D002567 ORTHO05D006538 0.0e+00 1714.5 1128 96.5
TAR362G0158 Trochodendron aralioides HOM05D002567 ORTHO05D006538 4.6e-214 749.2 904 51.8
Nn3g21405 Nelumbo nucifera HOM05D002567 ORTHO05D006538 6.6e-213 745.3 1059 46.4
Aqoxy5G00702 Aquilegia oxysepala HOM05D002567 ORTHO05D006538 1.1e-212 744.6 1070 50.0
MBI19_g12821_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 3.3e-204 716.5 1066 45.0
Prupe.8G255600 Prunus persica HOM05D002567 ORTHO05D006538 5.6e-196 689.1 1138 42.0
QL12p030584 Quercus lobata HOM05D002567 ORTHO05D006538 6.2e-195 685.6 1200 41.3
Nn5g30059 Nelumbo nucifera HOM05D002567 ORTHO05D006538 1.8e-194 684.1 1053 46.0
Dinv33021 Davidia involucrata HOM05D002567 ORTHO05D006538 3.8e-192 676.4 1185 41.9
CiPaw.07G103600 Carya illinoinensis HOM05D002567 ORTHO05D006538 5.5e-191 672.5 1188 41.2
Thecc.01G293900 Theobroma cacao HOM05D002567 ORTHO05D006538 1.2e-190 671.4 907 46.3
MD03G1284300 Malus domestica HOM05D002567 ORTHO05D006538 2.4e-186 657.1 1165 41.5
GSVIVG01010967001 Vitis vinifera HOM05D002567 ORTHO05D006538 3.4e-185 653.3 936 45.6
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 3.8e-184 649.8 1102 41.4
Potri.002G209216 Populus trichocarpa HOM05D002567 ORTHO05D006538 5.0e-184 649.4 1030 49.7
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 8.5e-184 648.7 1017 43.5
MD11G1302000 Malus domestica HOM05D002567 ORTHO05D006538 8.7e-181 638.6 1160 40.6
Cpa.g.sc9.189 Carica papaya HOM05D002567 ORTHO05D006538 2.5e-180 637.1 1023 43.3
Gorai.004G088100 Gossypium raimondii HOM05D002567 ORTHO05D006538 2.2e-179 634.0 1020 42.6
Gohir.D08G083700 Gossypium hirsutum HOM05D002567 ORTHO05D006538 5.3e-178 629.4 1020 42.5
Duzib138G0932 Durio zibethinus HOM05D002567 ORTHO05D006538 1.5e-177 627.9 1040 41.8
FvH4_2g25100 Fragaria vesca HOM05D002567 ORTHO05D006538 2.0e-177 627.5 915 49.2
Glyma.03G211500 Glycine max HOM05D002567 ORTHO05D006538 1.3e-176 624.8 908 45.2
Sabra02G0150900 Salix brachista HOM05D002567 ORTHO05D006538 1.7e-176 624.4 1236 44.5
TWI14G0289 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 2.2e-176 624.0 1171 39.7
FAN24G0094 Fragaria x ananassa HOM05D002567 ORTHO05D006538 1.1e-175 621.7 913 49.0
Cc01_g20510 Coffea canephora HOM05D002567 ORTHO05D006538 1.9e-175 620.9 906 44.6
Glyma.19G208700 Glycine max HOM05D002567 ORTHO05D006538 1.9e-175 620.9 907 45.0
Gohir.A08G074400 Gossypium hirsutum HOM05D002567 ORTHO05D006538 3.2e-175 620.2 1020 42.0
Potri.014G132800 Populus trichocarpa HOM05D002567 ORTHO05D006538 4.2e-175 619.8 1233 44.4
RcHm_v2.0_Chr6g0293161 Rosa chinensis HOM05D002567 ORTHO05D006538 2.3e-173 614.0 1075 40.7
Lalb_Chr15g0078671 Lupinus albus HOM05D002567 ORTHO05D006538 5.1e-173 612.8 1165 39.4
CsaV3_7G028930 Cucumis sativus L. HOM05D002567 ORTHO05D006538 2.0e-172 610.9 914 47.0
CANSAT25G2282 Cannabis sativa HOM05D002567 ORTHO05D006538 9.7e-172 608.6 883 45.2
Dinv19733 Davidia involucrata HOM05D002567 ORTHO05D006538 2.8e-171 607.1 779 48.3
Lj1g0027200 Lotus japonicus HOM05D002567 ORTHO05D006538 1.4e-170 604.7 912 44.5
MELO3C016045.2 Cucumis melo HOM05D002567 ORTHO05D006538 3.1e-170 603.6 1151 41.1
Atru.chr5.1232 Acer truncatum HOM05D002567 ORTHO05D006538 5.3e-170 602.8 909 46.6
VMungo1383G1965 Vigna mungo HOM05D002567 ORTHO05D006538 1.4e-167 594.7 908 43.0
ClCG09G006200 Citrullus lanatus HOM05D002567 ORTHO05D006538 1.9e-167 594.3 1048 43.5
Ciclev10018617m.g Citrus clementina HOM05D002567 ORTHO05D006538 2.5e-167 594.0 1198 37.9
PGR119G0460 Punica granatum HOM05D002567 ORTHO05D006538 8.8e-165 585.5 1069 39.7
vmacro02487 Vaccinium macrocarpon HOM05D002567 ORTHO05D006538 2.0e-164 584.3 981 49.0
arahy.Tifrunner.gnm1.ann1.B3NEVG Arachis hypogaea HOM05D002567 ORTHO05D006538 7.4e-164 582.4 899 44.9
Phvul.001G204600 Phaseolus vulgaris HOM05D002567 ORTHO05D006538 7.4e-164 582.4 906 42.2
TWI59G0117 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 1.1e-162 578.6 1184 37.7
DCAR_018344 Daucus carota HOM05D002567 ORTHO05D006538 3.1e-162 577.0 906 43.0
FAN20G1419 Fragaria x ananassa HOM05D002567 ORTHO05D006538 1.2e-161 575.1 938 46.6
Ca_09134_v3 Cicer arietinum L. HOM05D002567 ORTHO05D006538 6.5e-160 569.3 1103 39.1
THA.LOC104815934 Tarenaya hassleriana HOM05D002567 ORTHO05D006538 2.5e-159 567.4 1060 39.5
Sed0021907 Sechium edule HOM05D002567 ORTHO05D006538 3.2e-159 567.0 1090 41.7
Medtr7g108390 Medicago truncatula HOM05D002567 ORTHO05D006538 2.7e-158 563.9 908 42.8
EL10Ac7g17517 Beta vulgaris HOM05D002567 ORTHO05D006538 3.6e-158 563.5 891 43.2
HPP92_025217 Vanilla planifolia HOM05D002567 ORTHO05D006538 8.0e-158 562.4 988 38.9
HanXRQChr04g0118111 Helianthus annuus HOM05D002567 ORTHO05D006538 2.3e-157 560.8 918 42.5
Lsat_1_v5_gn_8_54500 Lactuca sativa HOM05D002567 ORTHO05D006538 2.6e-156 557.4 954 41.8
Rhsim13G0015100 Rhododendron simsii HOM05D002567 ORTHO05D006538 4.4e-156 556.6 1124 45.3
AUR62033197 Chenopodium quinoa HOM05D002567 ORTHO05D006538 2.2e-155 554.3 857 43.2
FAN15G0803 Fragaria x ananassa HOM05D002567 ORTHO05D006538 2.2e-155 554.3 938 45.8
Sc17g0003440 Simmondsia chinensis HOM05D002567 ORTHO05D006538 2.2e-155 554.3 906 40.4
ECA236G0908 Erigeron canadensis HOM05D002567 ORTHO05D006538 1.8e-154 551.2 980 43.6
Sopen09g029570 Solanum pennellii HOM05D002567 ORTHO05D006538 1.8e-154 551.2 984 39.3
FAN27G3038 Fragaria x ananassa HOM05D002567 ORTHO05D006538 3.1e-154 550.4 913 45.7
TPR.G9283 Trifolium pratense HOM05D002567 ORTHO05D006538 3.1e-154 550.4 921 42.6
CAN.G1562.7 Capsicum annuum HOM05D002567 ORTHO05D006538 4.1e-154 550.1 1168 36.0
Carub.0006s3458 Capsella rubella HOM05D002567 ORTHO05D006538 5.5e-151 539.7 1082 37.2
AL6G50490 Arabidopsis lyrata HOM05D002567 ORTHO05D006538 1.2e-150 538.5 1005 41.2
ATR0706G272 Amborella trichopoda HOM05D002567 ORTHO05D006538 2.7e-150 537.3 886 42.1
CARHR250850 Cardamine hirsuta HOM05D002567 ORTHO05D006538 3.6e-150 537.0 1056 37.6
arahy.Tifrunner.gnm1.ann1.VDB3CB Arachis hypogaea HOM05D001550 ORTHO05D001611 1.0e-149 535.4 898 42.9
CDE11G0231 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 2.3e-149 534.3 1208 34.6
BcaB05g23644 Brassica carinata HOM05D002567 ORTHO05D006538 4.4e-148 530.0 1077 38.0
AT4G02560 Arabidopsis thaliana HOM05D002567 ORTHO05D006538 2.2e-147 527.7 1116 39.3
BcaC03g16147 Brassica carinata HOM05D002567 ORTHO05D006538 2.8e-147 527.3 998 39.2
C02p39290 Brassica napus HOM05D002567 ORTHO05D006538 8.3e-147 525.8 999 39.7
BolC2t09940H Brassica oleracea HOM05D002567 ORTHO05D006538 8.3e-147 525.8 999 39.7
A02p24870 Brassica napus HOM05D002567 ORTHO05D006538 9.1e-146 522.3 1007 39.3
BraA02t07474Z Brassica rapa HOM05D002567 ORTHO05D006538 9.1e-146 522.3 1007 39.3
Hund18109 Selenicereus undatus HOM05D002567 ORTHO05D006538 1.6e-145 521.5 923 40.6
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 5.0e-144 516.5 1015 37.2
Sp6g02470 Schrenkiella parvula HOM05D002567 ORTHO05D006538 9.5e-143 512.3 1080 38.1
Oeu046708.2 Olea europaea HOM05D002567 ORTHO05D006538 1.2e-142 511.9 1057 37.8
Migut.D00183 Erythranthe guttata HOM05D002567 ORTHO05D006538 1.8e-141 508.1 1097 38.8
Aa31LG5G2190 Aethionema arabicum HOM05D002567 ORTHO05D006538 3.4e-140 503.8 1044 36.2
AUR62043270 Chenopodium quinoa HOM05D002567 ORTHO05D006538 5.7e-140 503.1 891 40.1
Sopen09g029590 Solanum pennellii HOM05D002567 ORTHO05D006538 1.0e-136 492.3 997 37.5
arahy.Tifrunner.gnm1.ann1.8D3299 Arachis hypogaea HOM05D002567 ORTHO05D006538 2.0e-132 478.0 786 42.7
TAR633G1653 Trochodendron aralioides HOM05D002567 ORTHO05D006538 2.6e-132 477.6 458 59.6
Thhalv10028403m.g Eutrema salsugineum HOM05D002567 ORTHO05D006538 9.8e-132 475.7 1088 34.1
Lalb_Chr18g0047271 Lupinus albus HOM05D002567 ORTHO05D006538 9.8e-132 475.7 574 51.2
Psat3g022840 Pisum sativum HOM05D002567 ORTHO05D006538 1.2e-129 468.8 903 40.0
CDE05G3083 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 1.6e-129 468.4 943 36.6
Zm00001eb142180 Zea mays HOM05D002567 ORTHO05D006538 1.3e-128 465.3 1092 35.1
Lj2C1188T12 Lonicera japonica HOM05D002567 ORTHO05D006538 2.5e-127 461.1 568 51.1
MBI19_g13122_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 3.3e-127 460.7 795 41.9
Solyc09g074730.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 1.2e-124 452.2 862 38.5
Sabra14G0099200 Salix brachista HOM05D002567 ORTHO05D006538 1.5e-116 425.2 962 42.0
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 8.3e-115 419.5 901 35.2
Eucgr.H01191 Eucalyptus grandis HOM05D002567 ORTHO05D006538 8.6e-104 382.9 903 35.9
SHI15302 Sapria himalayana HOM05D002567 ORTHO05D006538 1.2e-102 379.0 914 34.4
SGA_v2.0_scaffold2G01415 Striga asiatica HOM05D001550 ORTHO05D006538 1.2e-100 372.5 547 43.3
Peaxi162Scf00067g01812 Petunia axillaris HOM05D002567 ORTHO05D006538 4.2e-90 337.4 503 43.3
unitig_26.g10168 Utricularia gibba HOM05D002567 ORTHO05D006538 2.5e-87 328.2 953 31.3
Solyc09g074690.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 9.6e-79 299.7 356 49.4
Actinidia28538 Actinidia chinensis HOM05D002567 ORTHO05D006538 3.2e-74 284.6 354 61.9
Manes.05G065900 Manihot esculenta HOM05D002567 ORTHO05D006538 3.5e-73 281.2 843 33.2
Os01g0934300 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D006538 6.7e-72 276.9 378 45.2
Actinidia32249 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.0e-60 238.8 474 37.6
Actinidia28539 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.1e-55 223.0 461 38.8
Oeu011428.1 Olea europaea HOM05D002567 ORTHO05D006538 1.4e-50 206.1 183 61.7
Eucgr.H01192 Eucalyptus grandis HOM05D002567 ORTHO05D006538 6.7e-48 197.2 162 67.9
Lj2A1188T56 Lonicera japonica HOM05D002567 ORTHO05D006538 8.2e-46 190.3 209 55.5
Lalb_Chr18g0047261 Lupinus albus HOM05D002567 ORTHO05D006538 1.5e-42 179.5 213 49.3
Peaxi162Scf00067g01813 Petunia axillaris HOM05D002567 ORTHO05D006538 1.2e-39 169.9 198 50.0
Mapoly0032s0010 Marchantia polymorpha HOM05D002567 ORTHO05D006538 2.0e-39 169.1 565 28.3
Pp3c7_5840 Physcomitrium patens HOM05D002567 ORTHO05D006538 6.5e-35 154.1 1108 22.8
Solyc09g074710.2 Solanum lycopersicum HOM05D002567 ORTHO05D006538 5.2e-32 144.4 181 46.4
Psat0s3384g0160 Pisum sativum HOM05D002567 ORTHO05D006538 3.3e-26 125.2 161 50.3
Actinidia02761 Actinidia chinensis HOM05D002567 ORTHO05D006538 5.5e-26 124.4 208 38.9
Actinidia00673 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.3e-24 119.0 115 56.5
MBI01_g23938_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 4.0e-24 118.2 99 63.6
MBI05_g31851_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 4.9e-22 111.3 80 66.2
TAR399G0002 Trochodendron aralioides HOM05D002567 ORTHO05D006538 1.1e-21 110.2 66 77.3
CBR_g48346 Chara braunii HOM05D002567 ORTHO05D006538 3.8e-19 101.7 362 26.8
Actinidia02760 Actinidia chinensis HOM05D002567 ORTHO05D006538 9.5e-18 97.1 68 70.6
MBI02_g41934_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 4.7e-17 94.7 56 80.4
SMO119G0396 Selaginella moellendorffii HOM05D002567 ORTHO05D006538 3.0e-16 92.0 292 25.7
Mapoly0030s0133 Marchantia polymorpha HOM05D002567 ORTHO05D006538 2.6e-15 89.0 263 30.0
Actinidia02762 Actinidia chinensis HOM05D002567 ORTHO05D006538 4.4e-15 88.2 96 56.2
CBR_g48344 Chara braunii HOM05D002567 ORTHO05D006538 1.9e-13 82.8 178 32.6
Mapoly0004s0277 Marchantia polymorpha HOM05D002567 ORTHO05D006538 1.2e-12 80.1 265 28.7
Mapoly0055s0074 Marchantia polymorpha HOM05D002567 ORTHO05D006538 7.8e-12 77.4 74 48.6
BcaC04g23997 Brassica carinata HOM05D002567 ORTHO05D006538 1.9e-10 72.8 79 48.1
MBI19_g13121_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 2.8e-09 68.9 223 31.8
Sed0026959 Sechium edule HOM05D002848 ORTHO05D003043 4.7e-09 68.2 254 29.9
Phvul.002G110100 Phaseolus vulgaris HOM05D002848 ORTHO05D003043 2.3e-08 65.9 278 26.3
Solyc09g074700.2 Solanum lycopersicum HOM05D002567 ORTHO05D006538 8.9e-08 63.9 60 56.7
Actinidia22990 Actinidia chinensis HOM05D002848 ORTHO05D003043 1.5e-07 63.2 91 41.8
CARHR020360 Cardamine hirsuta HOM05D002848 ORTHO05D003043 2.0e-07 62.8 217 31.8
RcHm_v2.0_Chr2g0170231 Rosa chinensis HOM05D002567 ORTHO05D006538 2.0e-07 62.8 47 59.6
Glyma.11G075900 Glycine max HOM05D002848 ORTHO05D003043 3.4e-07 62.0 90 37.8
Glyma.02G049600 Glycine max HOM05D002848 ORTHO05D003043 4.4e-07 61.6 107 36.4
CSS0044135 Camellia sinensis var. sinensis HOM05D002848 ORTHO05D003043 9.8e-07 60.5 179 29.6
Sabra07G0010500 Salix brachista HOM05D002848 ORTHO05D003043 9.8e-07 60.5 228 28.5
ClCG08G014420 Citrullus lanatus HOM05D004047 ORTHO05D004772 1.3e-06 60.1 164 28.0
Glyma.02G049700 Glycine max HOM05D002848 ORTHO05D003043 1.7e-06 59.7 200 31.0
CSS0049415 Camellia sinensis var. sinensis HOM05D002848 ORTHO05D003043 2.9e-06 58.9 167 30.5
Nn5g29271 Nelumbo nucifera HOM05D002848 ORTHO05D003043 2.9e-06 58.9 179 30.7
Sed0014337 Sechium edule HOM05D002848 ORTHO05D003043 2.9e-06 58.9 112 34.8
CBR_g36670 Chara braunii HOM05D002848 ORTHO05D003043 3.7e-06 58.5 100 33.0
TAR381G0737 Trochodendron aralioides HOM05D002848 ORTHO05D003043 3.7e-06 58.5 99 37.4
Glyma.06G025700 Glycine max HOM05D002848 ORTHO05D003043 4.9e-06 58.2 77 44.2
Gohir.A11G176500 Gossypium hirsutum HOM05D002848 ORTHO05D003043 8.3e-06 57.4 122 34.4
VMungo0251G2011 Vigna mungo HOM05D002848 ORTHO05D003043 8.3e-06 57.4 84 40.5


User provided reference genes

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