Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 4.0e-59 231.1 108 100.0
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 6.9e-59 230.3 108 99.1
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.6e-47 192.6 108 82.4
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 4.6e-47 191.0 108 81.5
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.9e-45 185.7 108 80.6
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 4.8e-44 181.0 104 78.8
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.4e-43 179.5 108 75.9
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 3.1e-43 178.3 104 77.9
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 9.0e-43 176.8 106 76.4
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 1.5e-42 176.0 106 76.4
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 2.0e-42 175.6 104 79.8
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 2.0e-42 175.6 104 76.0
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.6e-42 175.3 106 76.4
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 1.3e-41 172.9 104 77.9
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 1.3e-41 172.9 104 76.0
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.3e-41 172.9 100 79.0
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.7e-41 172.6 101 78.2
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 1.7e-41 172.6 104 76.0
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 2.2e-41 172.2 108 75.0
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 2.2e-41 172.2 103 77.7
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 2.2e-41 172.2 104 76.9
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 2.2e-41 172.2 100 79.0
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.9e-41 171.8 106 75.5
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 2.9e-41 171.8 104 76.0
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 3.8e-41 171.4 104 76.9
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 3.8e-41 171.4 103 77.7
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 4.9e-41 171.0 104 76.0
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 6.5e-41 170.6 105 72.4
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 6.5e-41 170.6 104 74.0
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 6.5e-41 170.6 104 76.0
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 6.5e-41 170.6 104 75.0
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 8.4e-41 170.2 104 76.9
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 8.4e-41 170.2 108 72.2
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 8.4e-41 170.2 104 75.0
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 1.1e-40 169.9 104 75.0
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 1.1e-40 169.9 103 76.7
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 1.1e-40 169.9 100 77.0
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 1.4e-40 169.5 104 74.0
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 1.4e-40 169.5 103 76.7
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 1.4e-40 169.5 104 75.0
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 1.9e-40 169.1 104 74.0
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.9e-40 169.1 104 75.0
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 3.2e-40 168.3 104 75.0
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 3.2e-40 168.3 99 78.8
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 4.2e-40 167.9 104 76.0
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 5.5e-40 167.5 103 74.8
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 9.3e-40 166.8 95 78.9
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 9.3e-40 166.8 104 74.0
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 9.3e-40 166.8 99 75.8
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 9.3e-40 166.8 99 77.8
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 9.3e-40 166.8 101 76.2
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.2e-39 166.4 106 69.8
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 1.2e-39 166.4 104 75.0
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.6e-39 166.0 103 76.7
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 1.6e-39 166.0 106 72.6
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 1.6e-39 166.0 100 77.0
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 1.6e-39 166.0 100 77.0
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.6e-39 166.0 104 73.1
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.1e-39 165.6 104 73.1
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.1e-39 165.6 104 73.1
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 2.1e-39 165.6 101 77.2
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 2.7e-39 165.2 103 72.8
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 2.7e-39 165.2 103 73.8
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 2.7e-39 165.2 100 75.0
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 2.7e-39 165.2 104 73.1
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 3.5e-39 164.9 104 73.1
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 3.5e-39 164.9 105 70.5
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 3.5e-39 164.9 105 70.5
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 3.5e-39 164.9 100 76.0
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 4.6e-39 164.5 95 78.9
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 4.6e-39 164.5 106 69.8
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 4.6e-39 164.5 104 72.1
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.6e-39 164.5 104 72.1
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.6e-39 164.5 104 72.1
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.6e-39 164.5 104 73.1
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 6.0e-39 164.1 103 71.8
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 6.0e-39 164.1 100 77.0
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 6.0e-39 164.1 100 77.0
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 6.0e-39 164.1 100 76.0
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 7.9e-39 163.7 104 74.0
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 7.9e-39 163.7 100 77.0
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 7.9e-39 163.7 105 70.5
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 7.9e-39 163.7 105 70.5
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 7.9e-39 163.7 100 77.0
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 7.9e-39 163.7 104 70.2
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 7.9e-39 163.7 104 70.2
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 1.0e-38 163.3 106 73.6
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.3e-38 162.9 95 78.9
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.3e-38 162.9 95 76.8
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 2.3e-38 162.2 100 76.0
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 2.3e-38 162.2 104 70.2
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 2.3e-38 162.2 105 72.4
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 3.0e-38 161.8 104 73.1
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 3.0e-38 161.8 104 73.1
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 3.0e-38 161.8 104 73.1
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 3.0e-38 161.8 105 69.5
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 3.0e-38 161.8 105 69.5
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 3.0e-38 161.8 101 71.3
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 3.0e-38 161.8 103 71.8
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 3.9e-38 161.4 104 73.1
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 5.1e-38 161.0 103 69.9
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 5.1e-38 161.0 103 71.8
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 6.7e-38 160.6 104 72.1
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 6.7e-38 160.6 104 72.1
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 6.7e-38 160.6 104 72.1
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 6.7e-38 160.6 104 72.1
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 6.7e-38 160.6 104 72.1
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 6.7e-38 160.6 104 72.1
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 6.7e-38 160.6 104 72.1
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 6.7e-38 160.6 104 72.1
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 6.7e-38 160.6 104 72.1
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 6.7e-38 160.6 104 72.1
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 6.7e-38 160.6 104 72.1
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 6.7e-38 160.6 104 72.1
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 6.7e-38 160.6 104 72.1
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.1e-37 159.8 104 72.1
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.5e-37 159.5 94 78.7
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.5e-37 159.5 90 80.0
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 1.9e-37 159.1 104 71.2
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 1.9e-37 159.1 104 70.2
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 1.9e-37 159.1 104 70.2
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 2.5e-37 158.7 104 70.2
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 4.3e-37 157.9 103 67.0
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 4.3e-37 157.9 104 69.2
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 5.7e-37 157.5 104 69.2
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 7.4e-37 157.1 106 65.1
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 9.7e-37 156.8 95 74.7
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 1.3e-36 156.4 104 68.3
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 1.6e-36 156.0 103 68.9
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 3.7e-36 154.8 102 71.6
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 3.7e-36 154.8 102 71.6
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 6.3e-36 154.1 88 77.3
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 6.3e-36 154.1 99 69.7
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 8.2e-36 153.7 104 66.3
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.1e-35 153.3 104 66.3
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.4e-35 152.9 104 65.4
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.8e-35 152.5 104 66.3
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.8e-35 152.5 104 66.3
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.8e-35 152.5 104 68.3
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 3.1e-35 151.8 96 68.8
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 4.1e-35 151.4 104 64.4
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 5.3e-35 151.0 104 64.4
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.5e-34 149.4 104 65.4
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 2.0e-34 149.1 104 64.4
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 1.7e-33 146.0 163 48.5
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 8.5e-33 143.7 104 61.5
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.1e-29 133.3 94 63.8
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 5.7e-29 131.0 94 60.6
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 9.7e-29 130.2 96 60.4
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 1.3e-28 129.8 93 63.4
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 2.2e-28 129.0 82 73.2
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 6.3e-28 127.5 73 72.6
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.4e-27 126.3 96 58.3
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 1.8e-27 125.9 70 75.7
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 1.2e-26 123.2 82 70.7
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 3.8e-25 118.2 63 79.4
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.5e-24 115.5 80 66.2
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 2.1e-23 112.5 94 47.9
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 1.5e-21 106.3 71 70.4
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 6.3e-20 100.9 91 49.5
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.5e-18 96.3 73 63.0
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 7.7e-18 94.0 67 65.7
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 1.7e-17 92.8 63 71.4
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 2.2e-17 92.4 90 45.6
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 3.8e-17 91.7 63 68.3
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 5.0e-17 91.3 45 84.4
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 8.5e-17 90.5 69 62.3
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 4.2e-16 88.2 54 75.9
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 9.4e-16 87.0 54 72.2
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 2.1e-15 85.9 59 71.2
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.8e-14 82.8 52 67.3
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 2.3e-14 82.4 63 63.5
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 3.0e-14 82.0 60 65.0
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 2.0e-13 79.3 55 65.5
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 7.4e-13 77.4 51 72.5
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 5.3e-11 71.2 65 55.4
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 7.0e-11 70.9 45 71.1
Cre07.g333900 Chlamydomonas reinhardtii HOM05D004069 ORTHO05D004699 8.8e-06 53.9 87 32.2


User provided reference genes

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