Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 6.7e-48 193.7 101 100.0
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 1.9e-47 192.2 101 99.0
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 3.3e-47 191.4 101 99.0
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 2.8e-46 188.3 101 97.0
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 2.8e-46 188.3 101 97.0
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 4.5e-36 154.5 101 79.2
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 2.2e-35 152.1 95 81.1
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 3.8e-35 151.4 99 78.8
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 1.4e-34 149.4 99 77.8
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 2.5e-34 148.7 99 77.8
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 2.5e-34 148.7 95 82.1
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 4.2e-34 147.9 99 79.8
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 5.5e-34 147.5 101 75.2
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 9.3e-34 146.7 98 74.5
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 9.3e-34 146.7 95 80.0
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 1.2e-33 146.4 95 80.0
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 1.6e-33 146.0 95 81.1
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 2.1e-33 145.6 100 74.0
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 2.1e-33 145.6 99 74.7
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 2.7e-33 145.2 101 72.3
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 2.7e-33 145.2 100 72.0
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 4.6e-33 144.4 97 77.3
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 4.6e-33 144.4 97 77.3
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 4.6e-33 144.4 100 74.0
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 6.1e-33 144.1 100 72.0
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 7.9e-33 143.7 95 76.8
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 7.9e-33 143.7 101 72.3
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 1.0e-32 143.3 100 73.0
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 1.8e-32 142.5 95 76.8
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 1.8e-32 142.5 94 75.5
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 1.8e-32 142.5 94 75.5
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 2.3e-32 142.1 94 77.7
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 2.3e-32 142.1 95 76.8
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 2.3e-32 142.1 100 72.0
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 2.3e-32 142.1 95 75.8
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 3.0e-32 141.7 101 72.3
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 3.0e-32 141.7 101 72.3
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 3.0e-32 141.7 94 77.7
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 6.7e-32 140.6 100 72.0
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 6.7e-32 140.6 99 73.7
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 8.7e-32 140.2 95 75.8
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 8.7e-32 140.2 95 74.7
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 8.7e-32 140.2 99 74.7
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 1.1e-31 139.8 97 75.3
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 1.1e-31 139.8 95 77.9
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 1.1e-31 139.8 91 78.0
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 1.1e-31 139.8 95 74.7
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 1.5e-31 139.4 98 71.4
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 1.5e-31 139.4 95 75.8
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 1.9e-31 139.0 95 76.8
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 1.9e-31 139.0 95 76.8
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 1.9e-31 139.0 94 76.6
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 3.3e-31 138.3 100 70.0
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 3.3e-31 138.3 95 75.8
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 3.3e-31 138.3 97 72.2
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 4.3e-31 137.9 100 71.0
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 4.3e-31 137.9 95 74.7
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 4.3e-31 137.9 94 75.5
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 4.3e-31 137.9 95 72.6
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 4.3e-31 137.9 95 72.6
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 5.7e-31 137.5 97 72.2
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 5.7e-31 137.5 94 73.4
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 5.7e-31 137.5 101 67.3
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 5.7e-31 137.5 101 67.3
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 9.7e-31 136.7 95 73.7
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 1.3e-30 136.3 99 71.7
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 1.3e-30 136.3 99 69.7
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 1.6e-30 136.0 96 70.8
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 1.6e-30 136.0 101 66.3
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 2.2e-30 135.6 99 70.7
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 2.2e-30 135.6 99 71.7
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 2.2e-30 135.6 99 71.7
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 2.2e-30 135.6 94 73.4
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 2.2e-30 135.6 95 72.6
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 3.7e-30 134.8 99 68.7
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 4.8e-30 134.4 99 69.7
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 4.8e-30 134.4 92 73.9
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 4.8e-30 134.4 99 71.7
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 4.8e-30 134.4 99 71.7
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 4.8e-30 134.4 99 71.7
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 4.8e-30 134.4 94 71.3
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 6.3e-30 134.0 99 69.7
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 6.3e-30 134.0 100 69.0
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 8.2e-30 133.7 91 75.8
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 1.1e-29 133.3 99 70.7
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 1.1e-29 133.3 95 73.7
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 1.1e-29 133.3 95 73.7
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 1.1e-29 133.3 95 71.6
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 1.4e-29 132.9 99 70.7
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 1.4e-29 132.9 94 73.4
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 1.4e-29 132.9 95 72.6
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 1.4e-29 132.9 99 69.7
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 1.8e-29 132.5 99 70.7
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 2.4e-29 132.1 99 70.7
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 2.4e-29 132.1 94 71.3
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 2.4e-29 132.1 95 72.6
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 3.1e-29 131.7 97 69.1
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 4.1e-29 131.3 97 68.0
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 4.1e-29 131.3 99 67.7
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 5.3e-29 131.0 99 69.7
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 5.3e-29 131.0 99 69.7
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 5.3e-29 131.0 99 69.7
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 5.3e-29 131.0 98 68.4
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 5.3e-29 131.0 92 70.7
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 6.9e-29 130.6 96 70.8
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 9.0e-29 130.2 95 69.5
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 9.0e-29 130.2 97 68.0
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 9.0e-29 130.2 97 68.0
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 9.0e-29 130.2 97 68.0
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.2e-28 129.8 95 71.6
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 1.2e-28 129.8 100 66.0
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 3.4e-28 128.3 95 71.6
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 4.5e-28 127.9 97 66.0
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 4.5e-28 127.9 97 66.0
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 4.5e-28 127.9 95 69.5
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 5.9e-28 127.5 94 72.3
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 7.7e-28 127.1 94 72.3
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 2.2e-27 125.6 95 69.5
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 2.2e-27 125.6 96 66.7
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 2.2e-27 125.6 96 66.7
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 2.9e-27 125.2 94 68.1
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 2.1e-25 119.0 95 65.3
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 5.7e-23 110.9 68 76.5
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 1.1e-21 106.7 72 68.1
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 1.8e-21 105.9 105 58.1
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 2.4e-21 105.5 103 59.2
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 3.4e-20 101.7 153 43.1
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 5.0e-19 97.8 68 69.1
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 6.5e-19 97.4 66 69.7
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 2.5e-18 95.5 85 58.8
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.2e-17 93.2 62 67.7
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 4.7e-17 91.3 64 68.8
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 1.8e-16 89.4 62 74.2
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 5.1e-16 87.8 88 53.4
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 5.1e-16 87.8 64 65.6
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 1.1e-15 86.7 89 53.9
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 2.0e-15 85.9 64 62.5
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 2.6e-15 85.5 64 60.9
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.7e-14 82.8 80 52.5
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 9.1e-13 77.0 83 50.6
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 2.0e-12 75.9 53 73.6
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 2.6e-12 75.5 99 49.5
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 3.2e-10 68.6 60 53.3
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 9.4e-10 67.0 75 53.3
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 6.1e-09 64.3 95 47.4
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 8.0e-09 63.9 85 48.2


User provided reference genes

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