Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 2.7e-263 911.4 441 100.0
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 1.0e-257 892.9 441 97.7
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 3.4e-173 612.1 441 65.5
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.7e-170 602.4 438 66.0
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 6.0e-170 601.3 442 63.6
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 7.9e-170 600.9 447 64.2
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 3.9e-169 598.6 442 64.0
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 1.5e-168 596.7 441 63.7
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 1.9e-168 596.3 442 63.8
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 4.3e-168 595.1 442 62.9
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 7.4e-168 594.3 441 63.9
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 9.7e-168 594.0 442 65.4
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 2.8e-167 592.4 472 62.3
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 4.8e-167 591.7 442 64.0
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.1e-166 590.5 443 63.9
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 1.1e-166 590.5 442 62.9
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.4e-166 590.1 439 64.2
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 9.0e-166 587.4 442 64.0
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 2.6e-165 585.9 442 62.7
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 2.6e-165 585.9 442 63.8
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 3.4e-165 585.5 442 63.3
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 7.7e-165 584.3 442 62.7
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 1.0e-164 583.9 442 63.8
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 3.8e-164 582.0 447 63.3
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 3.2e-163 578.9 445 61.6
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 3.2e-163 578.9 442 62.9
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 4.2e-163 578.6 442 64.0
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 9.4e-163 577.4 442 62.9
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 2.3e-161 572.8 438 61.6
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 2.3e-161 572.8 454 59.7
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 3.0e-161 572.4 442 63.3
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 2.5e-160 569.3 442 61.3
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 3.3e-160 568.9 442 62.2
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.3e-159 567.0 442 62.4
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 2.8e-159 565.8 436 61.7
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 1.8e-158 563.1 442 60.9
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 3.1e-158 562.4 443 60.5
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 3.4e-157 558.9 437 60.9
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 4.5e-157 558.5 416 65.6
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 7.7e-157 557.8 437 60.9
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 7.7e-157 557.8 444 59.5
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 1.0e-156 557.4 444 61.5
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 1.7e-156 556.6 439 62.0
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.7e-156 556.6 437 60.6
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 5.0e-156 555.1 436 59.6
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 1.1e-155 553.9 444 61.0
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 1.4e-155 553.5 444 59.7
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 1.2e-154 550.4 443 60.0
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 3.6e-154 548.9 443 60.0
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 6.1e-154 548.1 441 59.0
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 6.1e-154 548.1 441 58.5
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 3.0e-153 545.8 442 59.5
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 1.1e-152 543.9 442 60.0
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 1.5e-152 543.5 442 60.4
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 2.2e-151 539.7 442 59.7
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 2.2e-151 539.7 442 59.5
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 4.8e-151 538.5 442 59.3
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 8.2e-151 537.7 438 58.9
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.4e-150 537.0 442 59.7
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 3.1e-150 535.8 438 57.1
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 9.1e-150 534.3 436 58.3
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.5e-149 533.5 442 59.3
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 2.0e-149 533.1 438 57.3
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 4.5e-149 531.9 442 58.1
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 1.0e-148 530.8 437 57.2
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.3e-148 530.4 442 59.0
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 6.5e-148 528.1 439 56.5
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 3.2e-147 525.8 487 54.2
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 5.5e-147 525.0 441 57.4
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 1.2e-146 523.9 445 57.5
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 4.7e-146 521.9 441 56.5
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 8.0e-146 521.2 416 61.1
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 2.3e-145 519.6 436 56.9
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 6.7e-145 518.1 444 56.3
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 9.7e-144 514.2 436 56.4
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 9.7e-144 514.2 436 56.4
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 1.7e-143 513.5 454 54.8
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 3.7e-143 512.3 440 55.9
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 6.3e-143 511.5 443 55.3
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 6.3e-143 511.5 443 55.3
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 8.2e-143 511.1 436 56.7
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 3.1e-142 509.2 438 55.7
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 7.0e-142 508.1 434 57.6
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 3.5e-141 505.8 365 65.2
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 3.5e-141 505.8 376 64.6
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 2.9e-140 502.7 444 54.1
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 2.9e-140 502.7 436 55.7
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 5.0e-140 501.9 365 64.7
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 1.9e-139 500.0 398 58.8
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 1.0e-137 494.2 381 62.7
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 1.0e-137 494.2 435 55.9
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 3.4e-136 489.2 439 58.3
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 5.7e-136 488.4 442 57.2
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 5.5e-131 471.9 379 59.9
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 7.2e-131 471.5 436 54.1
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 2.1e-130 469.9 384 59.9
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 3.0e-129 466.1 437 54.5
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.5e-128 463.8 363 62.8
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 1.3e-127 460.7 461 50.1
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 3.7e-127 459.1 403 56.1
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 9.1e-126 454.5 436 52.5
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 9.5e-123 444.5 447 50.1
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 2.8e-122 443.0 456 49.3
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 2.0e-120 436.8 444 50.7
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 2.0e-120 436.8 444 50.7
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 2.0e-120 436.8 444 50.7
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 4.9e-119 432.2 431 53.6
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 2.4e-118 429.9 436 51.4
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 9.2e-118 427.9 314 65.0
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.0e-113 414.5 437 49.4
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.3e-108 397.5 415 49.2
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 8.6e-108 394.8 447 47.0
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 9.5e-99 364.8 308 57.5
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 1.4e-97 360.9 443 41.1
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 6.8e-97 358.6 430 44.2
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 3.9e-92 342.8 445 43.6
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 7.3e-91 338.6 436 42.2
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 9.6e-91 338.2 422 40.8
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 3.6e-90 336.3 230 67.0
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 2.4e-89 333.6 312 53.8
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 7.1e-86 322.0 446 38.6
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 7.8e-85 318.5 242 64.0
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.3e-84 317.8 367 48.0
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 8.1e-82 308.5 374 46.0
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 1.7e-79 300.8 440 39.5
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 1.6e-77 294.3 445 39.3
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 5.3e-73 279.3 315 48.6
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.5e-72 277.7 184 71.2
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.0e-72 277.3 243 58.0
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 6.5e-63 245.7 530 31.7
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 5.8e-56 222.6 480 31.2
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 1.8e-49 201.1 143 67.8
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 3.4e-48 196.8 144 62.5
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 7.4e-35 152.5 497 28.6
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 2.8e-34 150.6 137 51.8
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 6.3e-26 122.9 102 55.9
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 1.6e-24 118.2 100 56.0
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 2.9e-23 114.0 88 60.2
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 2.2e-18 97.8 72 62.5
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 2.9e-15 87.4 353 26.1
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 6.8e-12 76.3 69 52.2
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 1.8e-09 68.2 117 33.3
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 5.4e-09 66.6 146 30.8
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 5.9e-08 63.2 115 32.2
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 1.0e-07 62.4 147 31.3
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 2.9e-07 60.8 139 30.9
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.9e-07 60.8 139 30.9
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.9e-07 60.8 139 30.9
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.9e-07 60.8 139 30.9
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 2.9e-07 60.8 122 32.0
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 3.8e-07 60.5 112 33.0
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 5.0e-07 60.1 139 30.9
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 6.6e-07 59.7 112 33.0
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 6.6e-07 59.7 138 29.7
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.1e-06 58.9 139 30.9
SEGI_33750 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 5.6e-06 56.6 99 35.4


User provided reference genes

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