Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 0.0e+00 1165.2 569 100.0
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 3.4e-306 1054.3 519 98.3
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 2.3e-238 828.9 516 77.1
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 3.1e-235 818.5 524 74.8
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 5.3e-235 817.8 516 74.6
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 1.2e-234 816.6 512 75.6
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 2.6e-234 815.5 516 74.6
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 3.4e-234 815.1 506 77.3
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 5.9e-234 814.3 510 76.1
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 1.0e-233 813.5 509 76.0
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 1.9e-232 809.3 517 74.9
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 2.5e-232 808.9 516 74.6
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 3.2e-232 808.5 517 75.4
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 9.4e-232 807.0 517 74.3
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 9.4e-232 807.0 517 74.3
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 1.6e-231 806.2 468 81.6
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 2.7e-231 805.4 513 74.3
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 1.0e-230 803.5 516 73.3
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 8.8e-230 800.4 516 74.0
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 8.8e-230 800.4 516 74.0
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.1e-229 800.0 513 73.7
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 2.6e-229 798.9 517 73.9
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 2.6e-229 798.9 510 74.7
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 5.7e-229 797.7 517 74.7
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 1.7e-228 796.2 513 74.5
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 3.7e-228 795.0 517 74.3
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 3.7e-228 795.0 517 74.5
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 4.8e-228 794.7 513 73.9
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 4.8e-228 794.7 513 74.1
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 6.3e-228 794.3 512 73.8
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 1.8e-227 792.7 513 73.7
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 2.4e-227 792.3 517 74.3
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 2.4e-227 792.3 516 72.7
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 3.1e-227 792.0 516 73.8
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 3.1e-227 792.0 512 73.2
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 4.1e-227 791.6 513 73.9
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 4.1e-227 791.6 512 73.2
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 5.3e-227 791.2 517 73.3
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 6.9e-227 790.8 517 73.9
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 6.9e-227 790.8 513 73.7
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 6.9e-227 790.8 542 70.5
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 1.2e-226 790.0 505 75.2
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 1.2e-226 790.0 517 72.5
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 1.5e-226 789.6 505 75.2
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 1.5e-226 789.6 510 73.7
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 2.0e-226 789.3 509 73.7
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 2.0e-226 789.3 509 73.7
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 2.6e-226 788.9 505 75.4
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 3.4e-226 788.5 505 75.2
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 3.4e-226 788.5 513 73.5
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 3.4e-226 788.5 513 72.5
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 4.5e-226 788.1 512 72.5
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 4.5e-226 788.1 527 72.1
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 4.5e-226 788.1 512 74.6
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 4.5e-226 788.1 509 72.9
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 5.9e-226 787.7 505 75.2
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 5.9e-226 787.7 505 75.2
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 5.9e-226 787.7 519 73.6
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 7.7e-226 787.3 513 73.1
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 1.0e-225 786.9 516 73.6
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 1.3e-225 786.6 507 74.0
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 1.7e-225 786.2 513 74.1
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.2e-225 785.8 523 72.1
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 2.9e-225 785.4 489 75.9
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 2.9e-225 785.4 519 73.4
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 5.0e-225 784.6 509 75.2
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 6.5e-225 784.3 516 73.3
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 6.5e-225 784.3 542 69.9
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 6.5e-225 784.3 519 73.2
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 8.5e-225 783.9 518 72.6
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.1e-224 783.5 523 72.1
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.9e-224 782.7 499 74.9
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 3.2e-224 781.9 511 73.6
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 3.2e-224 781.9 511 73.6
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 5.5e-224 781.2 514 73.3
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 9.4e-224 780.4 523 71.7
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 1.2e-223 780.0 518 72.4
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 1.6e-223 779.6 512 73.6
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 1.6e-223 779.6 509 74.9
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 2.1e-223 779.2 512 74.0
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 3.6e-223 778.5 511 73.0
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 3.6e-223 778.5 519 72.1
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 4.7e-223 778.1 547 68.9
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 6.1e-223 777.7 518 72.4
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 6.1e-223 777.7 518 72.4
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 6.1e-223 777.7 513 73.5
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 7.9e-223 777.3 513 72.7
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 1.4e-222 776.5 517 72.1
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 1.4e-222 776.5 506 71.9
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 1.8e-222 776.2 512 73.6
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 1.8e-222 776.2 516 72.5
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 3.9e-222 775.0 509 73.9
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 1.7e-220 769.6 514 73.3
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 1.7e-220 769.6 520 71.2
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 2.8e-220 768.8 514 72.0
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 2.8e-220 768.8 519 70.9
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 2.8e-220 768.8 520 71.3
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 3.7e-220 768.5 524 70.4
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 1.8e-219 766.1 519 71.1
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 3.5e-218 761.9 519 71.1
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 7.7e-218 760.8 519 70.7
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 2.2e-217 759.2 490 73.3
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 5.0e-217 758.1 472 75.0
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 8.0e-215 750.7 514 71.2
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 2.3e-214 749.2 516 69.6
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 3.0e-214 748.8 521 70.6
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 5.2e-214 748.0 515 69.5
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 6.7e-214 747.7 462 76.2
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 7.5e-213 744.2 476 73.9
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 2.2e-212 742.7 490 72.2
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 3.7e-212 741.9 466 74.5
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 1.1e-211 740.3 516 69.6
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 1.8e-211 739.6 515 68.9
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 3.5e-210 735.3 495 70.7
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 3.5e-210 735.3 462 75.5
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.7e-209 733.0 515 69.1
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 2.2e-209 732.6 495 70.3
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 8.5e-209 730.7 512 68.9
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 1.5e-208 729.9 513 69.6
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 1.9e-208 729.6 516 68.4
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 2.5e-208 729.2 515 68.7
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 1.2e-207 726.9 512 69.7
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 2.1e-207 726.1 499 69.5
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 2.7e-207 725.7 510 69.8
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 4.7e-207 724.9 462 75.1
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 1.2e-205 720.3 512 68.8
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 1.5e-205 719.9 509 69.0
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 4.8e-204 714.9 553 64.9
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 3.8e-201 705.3 488 70.5
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 1.1e-200 703.7 529 65.8
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 3.2e-200 702.2 516 65.7
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 3.6e-199 698.7 556 63.1
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 8.0e-199 697.6 516 65.5
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 5.2e-198 694.9 516 66.7
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 1.2e-197 693.7 568 61.6
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 1.6e-194 683.3 519 64.9
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 8.6e-193 677.6 499 66.7
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 3.6e-191 672.2 517 64.2
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 2.5e-184 649.4 516 62.4
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 2.1e-183 646.4 514 63.2
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 8.3e-180 634.4 492 65.7
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 5.4e-179 631.7 379 79.2
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 1.2e-178 630.6 378 78.6
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 2.2e-172 609.8 474 60.8
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 2.4e-171 606.3 440 65.9
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 7.1e-171 604.7 477 62.5
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 6.2e-167 591.7 450 60.9
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 1.2e-162 577.4 379 72.6
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 2.3e-161 573.2 471 58.8
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 1.8e-158 563.5 558 53.6
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 1.9e-155 553.5 472 56.8
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 1.8e-137 493.8 349 68.8
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 2.1e-130 470.3 292 75.0
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 2.3e-129 466.8 265 82.3
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 1.8e-121 440.7 290 72.8
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 2.9e-116 423.3 289 71.6
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 7.4e-112 408.7 285 69.8
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 5.3e-110 402.5 283 69.3
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 3.3e-104 383.3 247 70.9
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 1.7e-79 301.2 242 63.2
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 4.0e-73 280.0 201 67.7
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 1.5e-56 224.9 402 34.3
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 7.1e-54 216.1 471 31.2
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 9.5e-51 205.7 130 71.5
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.6e-34 150.6 202 44.1
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 5.4e-30 136.7 109 61.5
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 1.1e-27 129.0 107 57.9
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.5e-19 102.1 142 46.5
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 5.6e-19 100.1 57 77.2
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 2.1e-18 98.2 60 73.3
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 4.8e-18 97.1 149 35.6
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 6.9e-17 93.2 82 54.9
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.8e-12 78.6 162 35.2
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 7.2e-06 56.6 37 67.6
CAN.G195.50 Capsicum annuum HOM05D003954 ORTHO05D004627 9.4e-06 56.2 75 44.0


User provided reference genes

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