Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 2.1e-230 802.0 401 100.0
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 2.2e-227 792.0 401 98.8
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 2.3e-192 675.6 400 81.8
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 1.3e-190 669.8 400 82.0
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 6.3e-190 667.5 401 82.3
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 8.2e-190 667.2 401 81.5
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 1.4e-189 666.4 400 80.8
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 2.4e-189 665.6 400 81.2
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 5.3e-189 664.5 400 80.8
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 6.9e-189 664.1 400 80.2
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 6.9e-189 664.1 400 79.8
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 3.4e-188 661.8 400 80.5
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 4.5e-188 661.4 401 80.8
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 7.6e-188 660.6 400 80.0
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 7.6e-188 660.6 401 81.5
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 1.0e-187 660.2 401 79.6
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 1.3e-187 659.8 400 79.8
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 2.9e-187 658.7 393 82.4
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 8.4e-187 657.1 401 79.8
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 8.4e-187 657.1 424 77.1
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.9e-186 656.0 401 79.3
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 3.2e-186 655.2 400 80.0
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 5.5e-186 654.4 400 81.0
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 1.2e-185 653.3 400 80.0
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 1.6e-185 652.9 397 79.3
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 1.6e-185 652.9 400 79.5
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 2.7e-185 652.1 401 79.6
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 3.5e-185 651.7 400 80.2
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 7.9e-185 650.6 400 79.8
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.0e-184 650.2 401 78.3
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 2.3e-184 649.0 396 79.5
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 2.3e-184 649.0 401 77.8
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 3.0e-184 648.7 393 80.2
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 3.0e-184 648.7 398 80.2
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 1.5e-183 646.4 400 79.5
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 1.5e-183 646.4 400 79.8
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.9e-183 646.0 400 78.8
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 1.9e-183 646.0 397 80.6
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 5.7e-183 644.4 400 79.2
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 9.7e-183 643.7 396 79.0
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 1.3e-182 643.3 400 79.0
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 2.8e-182 642.1 400 78.8
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 8.2e-182 640.6 402 78.6
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 1.8e-181 639.4 400 78.0
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 2.4e-181 639.0 399 77.7
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 2.4e-181 639.0 405 77.8
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 4.1e-181 638.3 402 78.1
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 5.3e-181 637.9 398 78.6
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 1.2e-180 636.7 400 77.8
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 1.5e-180 636.3 397 78.3
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 1.5e-180 636.3 397 78.3
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 4.5e-180 634.8 401 78.6
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 2.9e-179 632.1 406 77.6
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 3.8e-179 631.7 400 78.5
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 5.0e-179 631.3 400 77.5
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 1.1e-178 630.2 400 77.2
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 2.5e-178 629.0 399 78.2
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 4.2e-178 628.2 402 78.4
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 9.4e-178 627.1 401 76.3
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 1.6e-177 626.3 396 79.5
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 2.1e-177 625.9 401 77.6
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 3.6e-177 625.2 388 79.4
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 6.1e-177 624.4 399 75.4
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 2.3e-176 622.5 402 76.1
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 6.7e-176 620.9 401 75.1
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 6.7e-176 620.9 405 76.0
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 2.5e-175 619.0 401 76.6
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 2.8e-174 615.5 403 73.9
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 3.7e-174 615.1 403 74.9
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 3.7e-174 615.1 403 74.4
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 4.8e-174 614.8 403 73.9
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 4.8e-174 614.8 432 71.8
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 1.1e-173 613.6 401 76.6
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 1.4e-173 613.2 403 74.2
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 4.1e-173 611.7 400 75.2
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 5.3e-173 611.3 419 71.1
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 1.5e-172 609.8 366 81.7
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 1.5e-172 609.8 403 73.4
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 1.5e-172 609.8 403 74.9
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 3.4e-172 608.6 401 73.8
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 4.5e-172 608.2 402 73.6
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 4.5e-172 608.2 401 75.6
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 5.9e-172 607.8 496 63.7
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 1.7e-171 606.3 402 73.4
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 1.7e-171 606.3 402 73.4
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 3.8e-171 605.1 401 73.6
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 1.1e-170 603.6 401 73.3
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 1.9e-170 602.8 381 75.9
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 3.2e-170 602.1 402 72.9
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 3.2e-170 602.1 402 73.1
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 3.2e-170 602.1 400 73.2
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 7.2e-170 600.9 382 75.7
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 9.4e-170 600.5 401 73.1
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 1.6e-169 599.7 400 72.8
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 2.1e-169 599.4 401 72.8
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 2.7e-169 599.0 382 75.7
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 3.6e-169 598.6 400 72.8
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 4.7e-169 598.2 401 72.8
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 7.9e-169 597.4 392 74.5
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 1.8e-168 596.3 381 75.1
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 3.0e-168 595.5 443 67.9
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 1.5e-167 593.2 400 75.5
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 2.0e-167 592.8 395 73.4
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 4.4e-167 591.7 442 68.1
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 9.7e-167 590.5 553 58.4
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 1.7e-166 589.7 419 71.1
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 3.7e-166 588.6 417 71.5
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 4.8e-166 588.2 349 81.1
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 6.5e-163 577.8 452 67.5
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 4.2e-162 575.1 399 72.2
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.8e-160 569.7 353 78.8
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 5.7e-159 564.7 402 70.1
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.6e-148 530.0 327 80.4
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 2.3e-144 516.2 311 80.7
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 1.4e-141 506.9 315 80.6
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 1.6e-137 493.4 292 81.8
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 4.1e-133 478.8 351 70.9
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.6e-121 440.3 347 67.4
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 6.2e-121 438.3 395 58.0
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 1.5e-119 433.7 364 57.1
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 6.0e-116 421.8 342 60.2
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 4.3e-114 415.6 246 82.9
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 4.1e-109 399.1 340 56.2
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 6.0e-100 368.6 232 79.7
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 4.3e-98 362.5 349 51.9
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 3.8e-86 322.8 284 53.9
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 2.4e-85 320.1 226 72.1
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 3.0e-75 286.6 334 44.9
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 4.6e-68 262.7 364 39.6
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 3.2e-61 240.0 228 60.1
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 7.2e-61 238.8 335 42.1
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 1.6e-60 237.7 205 63.9
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 3.7e-57 226.5 170 71.8
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 3.4e-55 219.9 273 48.7
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 3.6e-44 183.3 98 91.8
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 1.1e-32 145.2 80 87.5
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 1.8e-32 144.4 82 86.6
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.5e-29 134.8 132 57.6
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 4.7e-28 129.8 79 78.5
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 5.2e-19 99.8 104 47.1
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 2.6e-18 97.4 75 64.0
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 1.7e-17 94.7 65 64.6
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 4.0e-11 73.6 53 64.2
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 9.2e-08 62.4 46 71.7
Actinidia30121 Actinidia chinensis HOM05D000834 ORTHO05D056792 4.6e-07 60.1 40 62.5
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 1.0e-06 58.9 36 72.2
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 1.7e-06 58.2 32 78.1


User provided reference genes

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