Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 7.6e-189 663.7 338 100.0
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 2.5e-184 648.7 338 98.8
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.2e-98 364.0 345 55.9
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 3.6e-98 362.5 347 56.5
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 2.3e-97 359.8 345 57.4
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 4.4e-96 355.5 345 55.7
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 1.7e-95 353.6 345 55.1
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 4.9e-95 352.1 346 54.9
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 1.9e-94 350.1 346 52.0
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 2.1e-93 346.7 341 56.9
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 4.6e-93 345.5 345 54.5
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 7.8e-93 344.7 346 51.7
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 1.3e-92 344.0 347 53.6
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 1.5e-91 340.5 345 51.9
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 7.3e-91 338.2 344 51.7
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 9.6e-91 337.8 344 51.7
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 8.1e-90 334.7 344 51.2
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.1e-89 334.3 346 54.0
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 1.1e-89 334.3 345 54.2
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.8e-89 333.6 344 53.2
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 8.9e-89 331.3 347 51.3
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 2.0e-88 330.1 346 52.6
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.0e-88 330.1 347 52.2
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.0e-88 330.1 345 52.8
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 2.6e-88 329.7 283 59.4
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.6e-88 329.7 346 52.3
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 5.8e-88 328.6 345 51.9
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 7.6e-88 328.2 336 52.1
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 3.8e-87 325.9 344 52.0
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 4.9e-87 325.5 345 50.4
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 1.1e-86 324.3 356 51.1
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.6e-85 320.5 345 52.8
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.6e-85 320.5 345 52.8
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 1.6e-85 320.5 355 51.0
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 2.1e-85 320.1 345 51.0
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 6.0e-85 318.5 341 52.2
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 1.0e-84 317.8 346 50.3
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.3e-84 317.4 348 52.0
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.3e-84 316.6 338 50.6
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.1e-83 314.3 344 48.0
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.9e-83 313.5 338 49.7
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.9e-83 313.5 344 48.3
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 2.5e-83 313.2 348 50.0
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.3e-82 310.8 344 47.7
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.6e-82 310.5 339 50.4
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 1.8e-81 307.0 348 49.7
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 2.6e-80 303.1 287 55.4
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 2.6e-80 303.1 337 51.0
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 3.4e-80 302.8 345 50.4
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 5.8e-80 302.0 344 48.3
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 4.9e-79 298.9 352 48.3
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 6.4e-79 298.5 348 49.7
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 1.9e-78 297.0 345 50.7
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 3.2e-78 296.2 345 50.4
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 5.4e-78 295.4 345 47.8
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 7.1e-78 295.0 336 48.2
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 2.7e-77 293.1 345 50.7
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 7.9e-77 291.6 352 48.6
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.0e-76 291.2 345 48.1
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 8.7e-76 288.1 345 47.2
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 2.5e-75 286.6 345 47.0
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 7.4e-75 285.0 339 47.2
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 9.6e-75 284.6 327 46.5
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 2.8e-74 283.1 345 46.7
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 3.7e-74 282.7 279 51.6
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 6.2e-74 282.0 279 55.2
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 8.1e-74 281.6 348 46.8
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 1.1e-73 281.2 348 44.8
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 1.1e-73 281.2 347 45.2
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 1.8e-73 280.4 346 46.0
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 2.4e-73 280.0 347 44.7
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 4.0e-73 279.3 346 45.1
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 5.3e-73 278.9 349 44.1
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 6.9e-73 278.5 345 45.5
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 9.0e-73 278.1 313 47.9
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 1.5e-72 277.3 348 48.0
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 3.4e-72 276.2 337 44.8
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 3.4e-72 276.2 349 45.6
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 3.4e-72 276.2 350 45.7
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 4.5e-72 275.8 313 48.2
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 7.6e-72 275.0 289 49.1
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 9.9e-72 274.6 279 50.2
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 1.3e-71 274.2 328 45.1
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 1.3e-71 274.2 346 47.1
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 2.2e-71 273.5 349 46.1
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 2.9e-71 273.1 348 44.0
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 3.8e-71 272.7 347 43.8
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 3.8e-71 272.7 347 45.8
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 6.4e-71 271.9 347 45.2
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 6.4e-71 271.9 328 48.8
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 8.4e-71 271.6 339 45.7
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.1e-70 271.2 352 45.2
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 7.1e-70 268.5 348 45.1
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 6.0e-69 265.4 335 47.8
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 7.9e-69 265.0 335 46.9
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 1.3e-68 264.2 288 48.6
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 1.3e-68 264.2 329 44.7
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 1.8e-68 263.8 350 46.3
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 1.9e-67 260.4 322 46.0
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 2.5e-67 260.0 341 44.0
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 3.3e-67 259.6 346 45.4
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 4.3e-67 259.2 345 43.2
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 5.6e-67 258.8 348 44.8
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.6e-66 257.3 346 44.5
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 1.4e-65 254.2 333 44.4
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 1.4e-65 254.2 347 44.7
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.8e-65 253.8 345 42.6
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 9.0e-65 251.5 338 44.4
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 1.2e-64 251.1 348 43.4
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.9e-63 246.5 336 44.3
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 3.8e-63 246.1 340 42.1
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 1.4e-62 244.2 345 41.7
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 1.9e-62 243.8 336 42.9
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 2.5e-62 243.4 344 41.6
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 2.5e-62 243.4 346 41.6
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 2.5e-62 243.4 345 44.3
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 4.2e-62 242.7 314 47.1
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 7.1e-62 241.9 345 41.2
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 2.7e-61 240.0 348 41.7
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 3.5e-61 239.6 286 46.2
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 3.5e-61 239.6 286 46.2
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 3.5e-61 239.6 283 46.3
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 1.0e-60 238.0 278 45.7
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 2.3e-60 236.9 348 43.4
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 1.5e-59 234.2 286 45.1
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 6.3e-58 228.8 335 42.7
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 1.4e-57 227.6 285 43.5
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 5.0e-55 219.2 348 42.2
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 3.2e-54 216.5 286 43.4
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 1.2e-53 214.5 332 40.4
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 9.7e-51 204.9 276 42.0
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 1.4e-49 201.1 329 37.1
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 2.0e-48 197.2 200 53.5
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 4.5e-48 196.1 137 65.0
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 2.2e-47 193.7 334 37.4
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 5.0e-47 192.6 255 43.1
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 6.1e-45 185.7 137 62.8
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 7.9e-45 185.3 211 46.4
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 5.1e-44 182.6 129 63.6
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.6e-40 170.2 326 34.4
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 3.8e-39 166.4 239 39.7
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 1.6e-37 161.0 339 33.0
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 1.7e-31 141.0 279 35.8
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 1.3e-26 124.8 279 33.3
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 2.0e-24 117.5 103 50.5
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 2.8e-18 97.1 123 43.1
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 1.8e-09 67.8 261 24.5
AagrBONN_evm.TU.Sc2ySwM_362.2194 Anthoceros agrestis HOM05D024261 ORTHO05D026617 2.5e-06 57.4 137 29.2
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.5e-06 57.4 42 64.3


User provided reference genes

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