Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 1.1e-146 523.5 313 100.0
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 1.4e-136 490.0 313 91.4
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 1.8e-136 489.6 313 87.2
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 1.8e-115 419.9 307 74.3
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 7.0e-112 407.9 307 75.6
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 1.0e-110 404.1 306 70.6
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 2.2e-110 402.9 309 77.3
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 3.8e-110 402.1 299 72.2
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 1.9e-109 399.8 310 69.4
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 1.9e-109 399.8 308 75.0
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 3.6e-108 395.6 310 68.7
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 1.8e-107 393.3 311 68.5
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 5.2e-107 391.7 306 68.3
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 2.6e-106 389.4 311 67.8
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 2.6e-106 389.4 305 68.5
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 2.6e-106 389.4 306 68.0
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 4.4e-106 388.7 306 68.3
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 5.7e-106 388.3 300 74.7
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.3e-105 387.1 305 68.2
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 6.3e-105 384.8 306 67.6
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 1.1e-104 384.0 306 68.0
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 1.1e-104 384.0 306 68.0
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 1.1e-104 384.0 305 67.9
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 1.1e-104 384.0 308 67.2
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.4e-104 383.6 311 67.2
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 2.4e-104 382.9 308 66.2
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 4.1e-104 382.1 310 70.0
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 4.1e-104 382.1 311 66.6
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 4.1e-104 382.1 309 67.0
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 4.1e-104 382.1 307 65.8
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 7.0e-104 381.3 308 66.6
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 1.2e-103 380.6 311 66.6
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 2.0e-103 379.8 311 66.6
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 2.7e-103 379.4 308 66.2
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 3.5e-103 379.0 306 70.6
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 3.5e-103 379.0 306 71.9
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 4.5e-103 378.6 307 75.2
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 4.5e-103 378.6 307 66.8
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 5.9e-103 378.3 309 69.9
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 5.9e-103 378.3 307 74.6
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 1.0e-102 377.5 307 72.0
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.7e-102 376.7 307 73.9
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 1.7e-102 376.7 311 66.2
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 2.2e-102 376.3 303 75.2
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 2.2e-102 376.3 308 66.2
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 2.9e-102 375.9 300 72.7
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 2.9e-102 375.9 307 73.3
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 3.8e-102 375.6 305 71.8
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 3.8e-102 375.6 300 76.7
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 3.8e-102 375.6 302 73.8
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 3.8e-102 375.6 304 67.4
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 1.5e-101 373.6 305 74.8
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 1.9e-101 373.2 305 66.9
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 2.5e-101 372.9 306 65.7
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 2.5e-101 372.9 300 72.3
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 2.5e-101 372.9 308 64.6
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 3.2e-101 372.5 307 65.1
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 3.2e-101 372.5 309 65.7
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 4.2e-101 372.1 296 74.0
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 5.5e-101 371.7 314 73.6
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 5.5e-101 371.7 308 70.8
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 7.2e-101 371.3 310 69.7
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 7.2e-101 371.3 307 64.2
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 1.2e-100 370.5 304 70.7
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 1.6e-100 370.2 302 71.9
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 1.6e-100 370.2 302 73.8
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 2.1e-100 369.8 314 72.6
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 2.7e-100 369.4 307 70.7
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 2.7e-100 369.4 304 65.8
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 2.7e-100 369.4 304 71.4
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 3.6e-100 369.0 303 73.6
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 3.6e-100 369.0 303 73.6
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 3.6e-100 369.0 298 74.8
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 4.7e-100 368.6 307 71.3
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 4.7e-100 368.6 307 73.3
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 6.1e-100 368.2 306 69.9
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 6.1e-100 368.2 303 73.9
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 6.1e-100 368.2 299 67.6
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 1.0e-99 367.5 305 72.1
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 1.0e-99 367.5 306 66.0
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 1.4e-99 367.1 302 68.9
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 1.4e-99 367.1 300 75.0
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 3.0e-99 365.9 307 73.6
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 5.2e-99 365.2 307 72.3
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 5.2e-99 365.2 308 63.0
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 5.2e-99 365.2 300 73.3
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 1.2e-98 364.0 302 74.2
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 1.2e-98 364.0 291 76.6
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 1.5e-98 363.6 306 69.9
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 1.5e-98 363.6 307 62.5
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 2.6e-98 362.8 304 68.8
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 9.8e-98 360.9 319 63.3
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 2.2e-97 359.8 305 70.8
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 2.2e-97 359.8 291 66.3
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 2.8e-97 359.4 303 73.3
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 3.7e-97 359.0 302 68.2
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 4.8e-97 358.6 303 70.0
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 4.8e-97 358.6 300 71.0
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 6.3e-97 358.2 308 62.7
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 1.4e-96 357.1 308 66.6
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 1.4e-96 357.1 300 69.7
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 3.1e-96 355.9 291 75.9
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 3.1e-96 355.9 308 62.7
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 4.1e-96 355.5 291 75.3
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 4.1e-96 355.5 304 72.0
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 4.1e-96 355.5 295 70.2
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 5.4e-96 355.1 293 75.4
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 8.6e-94 347.8 299 67.9
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 2.5e-93 346.3 307 64.8
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 3.0e-91 339.3 319 61.1
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 2.2e-89 333.2 310 60.3
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 4.5e-87 325.5 306 61.8
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 8.6e-86 321.2 308 63.3
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 2.5e-85 319.7 291 61.5
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 9.2e-80 301.2 317 57.4
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 4.6e-79 298.9 304 61.2
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 8.0e-76 288.1 242 64.5
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 2.2e-73 280.0 230 64.8
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 1.4e-72 277.3 240 62.9
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 3.2e-72 276.2 302 64.6
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.7e-71 273.1 303 62.7
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 4.1e-64 249.2 297 60.3
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 7.6e-58 228.4 297 59.6
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 3.8e-57 226.1 209 69.9
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 4.6e-55 219.2 239 60.7
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 2.5e-53 213.4 259 56.4
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 2.1e-52 210.3 298 49.3
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 1.1e-51 208.0 243 53.1
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 3.2e-48 196.4 325 47.4
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 6.6e-46 188.7 201 55.7
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 7.6e-42 175.3 311 46.9
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 4.0e-35 152.9 126 63.5
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 6.9e-35 152.1 90 84.4
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 1.7e-33 147.5 118 66.9
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 2.9e-33 146.7 320 36.2
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 6.4e-33 145.6 128 61.7
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 3.2e-32 143.3 292 33.9
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 3.3e-29 133.3 90 74.4
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 5.8e-26 122.5 128 51.6
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 7.6e-26 122.1 77 79.2
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 2.1e-23 114.0 205 36.6
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 3.9e-22 109.8 64 82.8
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 5.7e-21 105.9 67 79.1
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 1.2e-18 98.2 160 40.0
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 2.2e-17 94.0 168 41.7
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 2.2e-17 94.0 168 41.7
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 2.2e-17 94.0 168 41.7
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 1.9e-16 90.9 213 34.7
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 4.2e-16 89.7 84 58.3
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 2.1e-15 87.4 84 57.1
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 3.6e-15 86.7 71 67.6
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 8.8e-14 82.0 71 64.8
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 9.7e-13 78.6 65 61.5
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 1.8e-11 74.3 80 48.8
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 1.0e-09 68.6 111 40.5
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 9.4e-08 62.0 40 75.0
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 3.0e-06 57.0 102 38.2


User provided reference genes

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