Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 4.8e-155 551.2 294 100.0
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 2.2e-144 515.8 295 94.9
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 9.1e-130 467.2 295 85.8
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 3.8e-128 461.8 295 84.7
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 1.3e-99 367.1 293 71.0
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 2.3e-93 346.3 294 67.0
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 7.5e-92 341.3 294 67.0
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 1.4e-90 337.0 295 66.4
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 2.4e-90 336.3 294 66.0
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 2.4e-90 336.3 296 65.9
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 5.4e-90 335.1 293 65.2
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 5.4e-90 335.1 293 65.9
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 7.0e-90 334.7 281 66.2
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 9.2e-90 334.3 293 64.5
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 3.5e-89 332.4 294 64.6
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 3.5e-89 332.4 293 63.8
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 6.0e-89 331.6 293 63.5
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 7.8e-89 331.3 293 64.5
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 3.0e-88 329.3 293 65.2
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 5.0e-88 328.6 293 63.1
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 5.0e-88 328.6 292 65.1
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 8.6e-88 327.8 295 64.7
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.5e-87 327.0 295 64.7
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 3.3e-87 325.9 296 65.2
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 4.3e-87 325.5 294 65.3
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 1.2e-86 323.9 293 64.2
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 1.6e-86 323.6 296 64.2
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 1.4e-85 320.5 300 63.3
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.8e-85 320.1 294 64.3
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 3.1e-85 319.3 253 69.2
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 3.1e-85 319.3 294 64.3
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 5.2e-85 318.5 294 64.6
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 6.8e-85 318.2 251 71.3
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 8.9e-85 317.8 294 63.9
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.2e-84 317.4 294 65.0
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.0e-84 316.6 294 63.9
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 4.4e-84 315.5 299 64.2
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 4.4e-84 315.5 294 63.9
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 4.4e-84 315.5 294 63.9
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 5.8e-84 315.1 294 63.6
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 1.3e-83 313.9 293 61.8
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 2.2e-83 313.2 293 63.1
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 2.2e-83 313.2 296 63.2
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 4.9e-83 312.0 328 57.6
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 8.3e-83 311.2 294 60.9
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 1.1e-82 310.8 256 69.1
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 1.9e-82 310.1 293 62.1
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 5.4e-82 308.5 293 61.8
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 1.2e-81 307.4 294 62.2
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 1.6e-81 307.0 297 63.0
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 1.6e-81 307.0 269 65.8
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 2.7e-81 306.2 300 61.7
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 4.6e-81 305.4 256 68.0
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 4.6e-81 305.4 273 65.2
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 4.6e-81 305.4 295 61.4
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 6.0e-81 305.1 262 66.0
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 1.0e-80 304.3 294 58.8
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 1.0e-80 304.3 299 62.5
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 1.0e-80 304.3 301 61.1
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 1.3e-80 303.9 283 60.4
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.7e-80 303.5 275 65.5
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 2.3e-80 303.1 296 58.4
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 5.1e-80 302.0 294 59.5
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 5.1e-80 302.0 304 58.9
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 6.6e-80 301.6 302 58.6
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 2.5e-79 299.7 260 66.5
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 3.3e-79 299.3 268 64.9
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 1.6e-78 297.0 326 57.1
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 1.6e-78 297.0 296 59.8
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 1.6e-78 297.0 311 58.2
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 2.1e-78 296.6 293 61.1
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 3.6e-78 295.8 299 62.2
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 1.4e-77 293.9 300 60.0
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 1.4e-77 293.9 296 60.1
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 1.5e-76 290.4 301 59.5
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 1.5e-76 290.4 301 59.5
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 2.0e-76 290.0 301 59.1
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 9.9e-76 287.7 303 59.7
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 2.2e-75 286.6 303 59.4
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 2.2e-75 286.6 303 59.4
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 8.4e-75 284.6 294 60.2
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.9e-74 283.5 296 56.4
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 1.9e-74 283.5 309 57.0
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 2.4e-74 283.1 295 58.6
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 3.2e-74 282.7 295 59.0
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 3.2e-74 282.7 293 58.4
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 1.2e-73 280.8 358 51.1
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 2.1e-73 280.0 295 58.6
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 3.5e-73 279.3 319 54.2
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 8.6e-72 274.6 387 48.6
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 5.6e-71 271.9 305 57.4
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 2.1e-70 270.0 303 56.8
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 4.7e-70 268.9 385 47.5
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 1.8e-69 266.9 372 48.9
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 6.9e-69 265.0 297 56.6
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 2.0e-68 263.5 293 53.6
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 2.6e-68 263.1 303 56.1
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 7.6e-68 261.5 283 54.4
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 7.6e-68 261.5 255 59.6
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 9.9e-68 261.2 251 59.0
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 3.2e-66 256.1 227 63.9
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 6.6e-64 248.4 198 71.2
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 5.6e-63 245.4 300 54.3
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 6.9e-61 238.4 183 72.7
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 1.5e-60 237.3 298 52.7
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 7.1e-58 228.4 220 60.9
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 1.6e-57 227.3 237 57.8
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 7.9e-57 224.9 263 53.2
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.9e-55 220.3 194 68.0
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 2.4e-53 213.4 304 49.7
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 5.1e-48 195.7 184 65.8
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 8.7e-48 194.9 174 63.2
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 3.3e-47 193.0 305 47.5
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 7.4e-47 191.8 243 44.9
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 9.6e-47 191.4 243 44.9
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 1.3e-46 191.0 244 47.5
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 4.0e-45 186.0 276 45.3
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.3e-43 181.0 147 69.4
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 4.6e-41 172.6 232 44.8
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 1.1e-39 167.9 249 40.6
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 6.3e-38 162.2 181 56.9
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 5.3e-37 159.1 162 58.0
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 6.5e-35 152.1 229 41.9
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 5.5e-34 149.1 180 54.4
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 7.9e-33 145.2 125 64.0
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 3.9e-32 142.9 119 64.7
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 1.6e-30 137.5 234 37.6
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 2.0e-28 130.6 122 64.8
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 7.2e-26 122.1 82 80.5
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 1.4e-24 117.9 173 46.2
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 1.7e-22 110.9 116 55.2
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 2.2e-19 100.5 105 56.2
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 2.2e-19 100.5 105 56.2
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 3.2e-18 96.7 105 54.3
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 1.8e-16 90.9 98 53.1
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 3.3e-15 86.7 129 43.4
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 1.1e-13 81.6 71 60.6
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 5.5e-10 69.3 168 29.2
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 9.4e-10 68.6 60 60.0
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 9.4e-10 68.6 60 60.0
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 9.4e-10 68.6 60 60.0
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 9.4e-10 68.6 60 60.0
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 1.6e-09 67.8 195 29.2


User provided reference genes

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