Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 3.5e-94 348.6 217 100.0
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 1.9e-79 299.7 217 71.9
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 3.2e-79 298.9 217 71.9
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 7.0e-79 297.7 217 71.0
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 9.2e-79 297.4 217 71.0
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 1.2e-78 297.0 217 71.0
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 1.2e-78 297.0 217 71.0
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 1.6e-78 296.6 217 70.5
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 2.0e-78 296.2 217 71.0
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 2.0e-78 296.2 217 71.0
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 2.7e-78 295.8 217 71.4
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 2.7e-78 295.8 217 70.0
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 3.5e-78 295.4 217 71.0
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 4.6e-78 295.0 217 72.4
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 6.0e-78 294.7 217 71.0
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 6.0e-78 294.7 217 70.0
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 7.8e-78 294.3 217 70.5
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 7.8e-78 294.3 217 71.4
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 1.0e-77 293.9 217 70.5
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 1.0e-77 293.9 217 70.5
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 1.3e-77 293.5 217 70.0
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 1.3e-77 293.5 216 69.9
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 1.7e-77 293.1 217 69.1
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 2.3e-77 292.7 217 70.0
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.0e-77 292.4 217 71.4
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 3.0e-77 292.4 217 68.2
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 3.0e-77 292.4 217 70.0
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 3.9e-77 292.0 216 70.4
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 5.0e-77 291.6 217 69.6
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 5.0e-77 291.6 217 79.7
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 5.0e-77 291.6 217 79.7
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 5.0e-77 291.6 217 69.1
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 5.0e-77 291.6 217 68.7
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 6.6e-77 291.2 217 68.7
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 6.6e-77 291.2 217 69.6
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 6.6e-77 291.2 217 69.6
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 6.6e-77 291.2 217 69.6
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 6.6e-77 291.2 217 67.7
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 8.6e-77 290.8 216 69.9
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 8.6e-77 290.8 217 69.6
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 8.6e-77 290.8 217 71.0
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 8.6e-77 290.8 217 69.6
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 1.1e-76 290.4 217 68.7
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 1.1e-76 290.4 217 68.7
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 1.1e-76 290.4 217 68.7
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 1.1e-76 290.4 217 68.7
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 1.1e-76 290.4 217 70.0
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 1.1e-76 290.4 217 69.6
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 1.5e-76 290.0 217 69.1
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 1.5e-76 290.0 217 68.2
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 1.5e-76 290.0 217 68.2
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 1.5e-76 290.0 217 68.2
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 1.5e-76 290.0 217 68.2
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 1.5e-76 290.0 217 68.2
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 1.5e-76 290.0 217 68.7
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 1.9e-76 289.7 217 68.2
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 1.9e-76 289.7 217 68.2
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 1.9e-76 289.7 221 68.8
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 2.5e-76 289.3 217 69.6
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.5e-76 289.3 217 68.7
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.5e-76 289.3 217 68.7
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 2.5e-76 289.3 217 70.0
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 2.5e-76 289.3 217 70.0
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 2.5e-76 289.3 217 69.6
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 3.3e-76 288.9 217 67.7
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 3.3e-76 288.9 217 70.0
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 4.3e-76 288.5 217 67.7
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 4.3e-76 288.5 217 69.1
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 5.6e-76 288.1 217 67.7
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 7.3e-76 287.7 217 67.3
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 7.3e-76 287.7 217 67.3
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 7.3e-76 287.7 217 67.7
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 7.3e-76 287.7 217 71.0
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 7.3e-76 287.7 217 71.0
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 7.3e-76 287.7 217 69.1
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 7.3e-76 287.7 217 68.2
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 9.5e-76 287.3 217 68.7
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 9.5e-76 287.3 217 67.3
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.2e-75 287.0 217 70.5
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 1.2e-75 287.0 217 68.7
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 1.2e-75 287.0 228 67.5
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 1.2e-75 287.0 217 67.3
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 1.6e-75 286.6 217 69.6
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 1.6e-75 286.6 217 68.7
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 2.1e-75 286.2 217 67.3
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 2.1e-75 286.2 217 68.7
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 2.8e-75 285.8 217 67.3
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 2.8e-75 285.8 217 68.7
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 3.6e-75 285.4 217 69.6
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 3.6e-75 285.4 217 68.2
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 3.6e-75 285.4 217 68.2
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 3.6e-75 285.4 217 69.6
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 4.7e-75 285.0 217 67.3
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 4.7e-75 285.0 217 67.7
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.7e-75 285.0 216 69.0
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 4.7e-75 285.0 217 68.2
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 4.7e-75 285.0 217 67.7
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 6.2e-75 284.6 217 70.0
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 8.1e-75 284.3 217 68.2
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 8.1e-75 284.3 217 68.2
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 1.1e-74 283.9 217 67.7
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 1.4e-74 283.5 217 67.7
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 1.8e-74 283.1 217 68.7
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 2.3e-74 282.7 215 67.9
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 6.8e-74 281.2 217 70.5
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 1.2e-73 280.4 217 65.9
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 2.6e-73 279.3 222 65.8
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 3.4e-73 278.9 217 66.4
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 4.4e-73 278.5 222 67.1
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 1.7e-72 276.6 199 70.9
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 2.9e-72 275.8 217 64.5
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 2.9e-72 275.8 217 64.1
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 1.3e-69 266.9 222 65.8
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.7e-69 266.5 217 63.6
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 5.6e-68 261.5 217 62.7
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 1.6e-67 260.0 217 61.3
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 2.3e-66 256.1 217 73.7
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 3.1e-66 255.8 217 60.8
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 4.0e-66 255.4 217 63.6
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 5.2e-66 255.0 217 63.1
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 8.9e-66 254.2 217 73.3
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 1.5e-65 253.4 217 62.2
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 7.6e-65 251.1 219 60.7
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 2.9e-64 249.2 217 58.1
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 3.2e-63 245.7 217 64.1
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 9.2e-63 244.2 217 60.8
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 1.2e-62 243.8 217 59.4
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 4.6e-62 241.9 277 52.7
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 6.0e-62 241.5 137 85.4
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 2.3e-61 239.6 217 62.2
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 8.6e-61 237.7 137 83.2
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 7.3e-60 234.6 217 63.6
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 1.6e-59 233.4 137 82.5
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 4.7e-59 231.9 182 64.8
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 2.4e-58 229.6 137 77.4
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 4.0e-58 228.8 216 57.9
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 8.9e-58 227.6 218 66.5
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 2.6e-57 226.1 218 59.2
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.2e-56 223.0 217 59.9
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 2.9e-56 222.6 217 59.4
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 4.2e-55 218.8 233 54.1
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 2.3e-53 213.0 217 49.3
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 2.8e-51 206.1 137 75.2
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 3.1e-50 202.6 234 53.0
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 6.4e-48 194.9 137 72.3
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 8.4e-48 194.5 180 60.0
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 1.9e-44 183.3 221 46.6
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 3.6e-43 179.1 217 47.5
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 6.9e-42 174.9 109 76.1
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 6.9e-42 174.9 109 76.1
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 2.6e-41 172.9 137 60.6
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.6e-35 153.7 97 75.3
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.4e-34 150.6 135 62.2
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 1.8e-34 150.2 136 61.8
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 6.9e-34 148.3 81 86.4
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 1.3e-32 144.1 82 84.1
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 2.5e-31 139.8 85 75.3
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 5.5e-31 138.7 260 38.1
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 9.3e-31 137.9 118 60.2
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 1.0e-21 107.8 71 69.0
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 1.8e-21 107.1 114 51.8
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 2.2e-16 90.1 101 51.5
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 2.2e-16 90.1 101 51.5
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 2.2e-16 90.1 101 51.5
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 2.2e-16 90.1 101 51.5
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 2.2e-16 90.1 101 51.5
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.8e-10 70.5 45 80.0
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.5e-09 65.9 45 73.3
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 5.5e-07 58.9 34 82.4
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 9.4e-07 58.2 40 65.0
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 3.6e-06 56.2 40 62.5


User provided reference genes

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